Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46875 * 2 1 4 4 C 1.35960 * 116.99902 * 179.97438 * 3 2 1 5 5 C 1.38664 * 120.05962 * 0.02562 * 4 3 2 6 6 C 1.38184 * 119.96675 * 179.97438 * 5 4 3 7 7 C 1.38260 * 120.09764 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94145 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.46704 * 90.00276 * 8 7 6 10 10 C 1.46902 * 110.99687 * 185.02706 * 9 8 7 11 11 H 1.08995 * 109.47440 * 39.82729 * 10 9 8 12 12 C 1.50698 * 109.47446 * 159.83061 * 10 9 8 13 13 H 1.08003 * 119.99656 * 5.69299 * 12 10 9 14 14 C 1.37868 * 120.00305 * 185.69965 * 12 10 9 15 15 N 1.31517 * 120.00392 * 5.49310 * 14 12 10 16 16 Si 1.86807 * 120.00001 * 185.49572 * 14 12 10 17 17 H 1.48504 * 109.46902 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47104 * 299.99557 * 16 14 12 19 19 H 1.48497 * 109.46947 * 60.00017 * 16 14 12 20 20 C 1.53001 * 109.46840 * 279.83053 * 10 9 8 21 21 C 1.53001 * 109.47149 * 295.06538 * 20 10 9 22 22 C 1.38268 * 120.12239 * 0.26192 * 7 6 5 23 23 C 1.38328 * 120.02847 * 359.48339 * 22 7 6 24 24 F 1.35100 * 120.04499 * 180.23313 * 23 22 7 25 25 H 1.08996 * 109.47449 * 59.99461 * 1 2 3 26 26 H 1.08993 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46606 * 299.99678 * 1 2 3 28 28 H 1.08997 * 109.47214 * 240.00625 * 2 1 3 29 29 H 1.09002 * 109.47182 * 120.00177 * 2 1 3 30 30 H 1.08000 * 120.01928 * 359.95243 * 5 4 3 31 31 H 1.08000 * 119.94951 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46653 * 330.00556 * 8 7 6 33 33 H 1.09001 * 109.47352 * 210.00430 * 8 7 6 34 34 H 1.00901 * 111.00011 * 61.07619 * 9 8 7 35 35 H 0.96999 * 119.99483 * 355.15096 * 15 14 12 36 36 H 1.08992 * 109.47373 * 55.06693 * 20 10 9 37 37 H 1.09002 * 109.46939 * 175.07184 * 20 10 9 38 38 H 1.08997 * 109.47055 * 65.00583 * 21 20 10 39 39 H 1.08993 * 109.47295 * 185.01354 * 21 20 10 40 40 H 1.09003 * 109.46806 * 305.01089 * 21 20 10 41 41 H 1.07997 * 119.98099 * 179.72458 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.2000 0.4268 0.0005 6 6 5.5697 0.6101 0.0005 7 6 6.0982 1.8877 0.0000 8 6 7.5924 2.0835 0.0006 9 7 8.0785 2.1464 -1.3842 10 6 9.5452 2.2174 -1.4245 11 1 9.9621 1.5563 -0.6648 12 6 10.0318 1.7889 -2.7849 13 1 9.3216 1.5820 -3.5718 14 6 11.3834 1.6610 -3.0249 15 7 12.2429 1.8071 -2.0403 16 14 11.9939 1.2802 -4.7488 17 1 13.4765 1.1948 -4.7412 18 1 11.4253 -0.0150 -5.2005 19 1 11.5655 2.3589 -5.6752 20 6 9.9939 3.6545 -1.1517 21 6 9.5119 4.5630 -2.2845 22 6 5.2584 2.9860 0.0050 23 6 3.8865 2.8085 -0.0003 24 9 3.0656 3.8815 -0.0003 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7886 -0.5718 0.0009 31 1 6.2282 -0.2459 0.0009 32 1 8.0680 1.2485 0.5151 33 1 7.8368 3.0134 0.5141 34 1 7.6651 2.9234 -1.8776 35 1 11.9322 2.0739 -1.1610 36 1 9.5690 3.9947 -0.2074 37 1 11.0818 3.6908 -1.0948 38 1 8.4225 4.5963 -2.2850 39 1 9.9062 5.5683 -2.1368 40 1 9.8638 4.1713 -3.2390 41 1 5.6737 3.9829 0.0091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278595548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = -71.831256 kcal Electronic energy + Delta-G solvation = -21717.539676 eV Core-core repulsion = 18318.723235 eV Total energy + Delta-G solvation = -3398.816441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.72221 -40.11767 -38.11601 -36.53253 -33.18184 -32.03015 -31.02642 -30.59148 -29.21220 -26.16534 -24.56129 -23.80769 -23.52871 -22.16967 -21.08605 -19.52749 -18.49780 -17.13341 -16.73909 -16.48723 -16.45021 -15.33381 -15.03888 -14.77588 -14.37260 -14.09781 -13.84245 -13.63506 -13.30733 -13.23022 -13.04874 -12.79741 -12.51683 -12.29423 -12.03359 -11.84295 -11.58816 -11.29117 -11.11951 -10.96982 -10.85644 -10.76596 -10.26422 -10.12099 -10.05758 -9.87822 -8.91864 -8.66004 -8.25596 -8.10229 -7.36322 -6.30313 -4.00447 1.16014 1.26503 2.91911 3.46009 3.46831 3.57788 3.65767 4.21181 4.53883 4.58367 4.62561 4.73542 4.90782 4.92538 5.08684 5.22743 5.28644 5.36117 5.43280 5.47658 5.54196 5.70749 5.75849 5.92049 6.04494 6.07829 6.12430 6.14716 6.19842 6.31157 6.64193 6.65447 6.67330 6.95995 7.02009 7.21499 7.22724 7.29880 7.87161 8.24145 8.41504 8.62952 8.92219 9.68010 11.05872 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.003445 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.587872 B = 8125.521079 C = 8612.246330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.313 6.313 4 C 0.088 3.912 5 C -0.182 4.182 6 C -0.067 4.067 7 C -0.072 4.072 8 C 0.095 3.905 9 N -0.671 5.671 10 C 0.204 3.796 11 H 0.028 0.972 12 C -0.571 4.571 13 H 0.055 0.945 14 C 0.018 3.982 15 N -0.917 5.917 16 Si 1.066 2.934 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.289 1.289 20 C -0.154 4.154 21 C -0.132 4.132 22 C -0.113 4.113 23 C 0.066 3.934 24 F -0.137 7.137 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.330 0.670 35 H 0.269 0.731 36 H 0.021 0.979 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.421 -2.006 5.758 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.227 6.227 4 C 0.042 3.958 5 C -0.201 4.201 6 C -0.086 4.086 7 C -0.073 4.073 8 C -0.034 4.034 9 N -0.301 5.301 10 C 0.096 3.904 11 H 0.045 0.955 12 C -0.610 4.610 13 H 0.073 0.927 14 C -0.186 4.186 15 N -0.555 5.555 16 Si 0.895 3.105 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.194 4.194 21 C -0.189 4.189 22 C -0.132 4.132 23 C 0.046 3.954 24 F -0.116 7.116 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.149 0.851 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.249 -2.846 4.782 18.124 hybrid contribution -1.312 1.265 1.214 2.190 sum -18.561 -1.581 5.996 19.569 Atomic orbital electron populations 1.21770 0.92698 1.02819 1.03574 1.22813 0.95898 0.81879 1.01576 1.86105 1.18182 1.29405 1.89004 1.18892 0.83183 0.92900 1.00839 1.21116 0.94060 0.97464 1.07465 1.20952 0.93838 0.97428 0.96381 1.19794 0.96295 0.92060 0.99137 1.20879 0.88863 1.00449 0.93243 1.60820 1.09717 1.49473 1.10111 1.19370 0.82096 0.90698 0.98276 0.95454 1.21804 0.93818 1.48875 0.96455 0.92664 1.25707 0.93183 0.94879 1.04804 1.70818 1.37624 1.44442 1.02584 0.83570 0.76057 0.76441 0.74408 1.20996 1.21511 1.21529 1.22277 1.02139 0.99669 0.95319 1.21596 0.98672 0.97218 1.01447 1.20931 0.90144 1.00609 1.01562 1.16894 0.87811 0.80860 1.09840 1.91473 1.72054 1.53608 1.94449 0.91466 0.90309 0.91551 0.91799 0.91931 0.84760 0.84762 0.90527 0.95190 0.85146 0.91940 0.96002 0.91447 0.94887 0.95313 0.90831 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.31 -4.05 10.00 -19.61 -0.20 -4.24 16 4 C 0.09 1.21 6.69 -39.18 -0.26 0.95 16 5 C -0.18 -2.25 9.04 -39.44 -0.36 -2.61 16 6 C -0.07 -0.92 9.69 -39.59 -0.38 -1.30 16 7 C -0.07 -1.08 5.44 -104.60 -0.57 -1.65 16 8 C 0.10 1.61 5.60 -4.98 -0.03 1.58 16 9 N -0.67 -13.70 6.18 -109.22 -0.67 -14.37 16 10 C 0.20 4.85 1.95 -68.86 -0.13 4.71 16 11 H 0.03 0.72 7.32 -51.93 -0.38 0.34 16 12 C -0.57 -15.32 7.18 -34.44 -0.25 -15.56 16 13 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 14 C 0.02 0.49 5.29 -17.82 -0.09 0.39 16 15 N -0.92 -26.70 13.21 55.43 0.73 -25.96 16 16 Si 1.07 24.80 29.91 -169.99 -5.08 19.71 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.15 -3.41 5.45 -26.73 -0.15 -3.56 16 21 C -0.13 -2.70 9.38 37.16 0.35 -2.35 16 22 C -0.11 -1.64 9.67 -39.54 -0.38 -2.02 16 23 C 0.07 0.98 7.31 -39.30 -0.29 0.69 16 24 F -0.14 -2.13 17.11 2.25 0.04 -2.09 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 28 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 33 H 0.03 0.50 7.14 -51.93 -0.37 0.13 16 34 H 0.33 6.58 6.79 -39.29 -0.27 6.32 16 35 H 0.27 7.73 5.62 -40.82 -0.23 7.50 16 36 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 37 H 0.07 1.65 6.17 -51.93 -0.32 1.33 16 38 H 0.03 0.61 6.68 -51.93 -0.35 0.26 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.67 6.88 -51.93 -0.36 1.31 16 41 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -29.76 335.91 -8.00 -37.76 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.92 Total: 4.84 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -1.96 Total: -20.70 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.06 Total: -40.34 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.20 Total: -4.24 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.76 -8.00 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278595548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.070 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds