Wall clock time and date at job start Tue Mar 31 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42909 * 109.47494 * 2 1 4 4 C 1.35952 * 117.00070 * 180.02562 * 3 2 1 5 5 C 1.38660 * 120.06588 * 359.97438 * 4 3 2 6 6 C 1.38181 * 119.96869 * 180.02562 * 5 4 3 7 7 C 1.38259 * 120.09675 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.93660 * 179.97438 * 7 6 5 9 9 N 1.46890 * 109.47121 * 89.99917 * 8 7 6 10 10 C 1.46905 * 110.99918 * 185.62421 * 9 8 7 11 11 H 1.08992 * 109.47091 * 34.12790 * 10 9 8 12 12 C 1.50701 * 109.46720 * 274.13199 * 10 9 8 13 13 H 1.08002 * 120.00192 * 359.97438 * 12 10 9 14 14 C 1.37880 * 120.00127 * 179.97438 * 12 10 9 15 15 N 1.31517 * 119.99972 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00122 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47127 * 90.00174 * 16 14 12 18 18 H 1.48499 * 109.47109 * 210.00219 * 16 14 12 19 19 H 1.48501 * 109.47075 * 329.99700 * 16 14 12 20 20 C 1.52998 * 109.47452 * 154.13073 * 10 9 8 21 21 C 1.52998 * 109.47236 * 294.92201 * 20 10 9 22 22 C 1.38253 * 120.12406 * 0.25170 * 7 6 5 23 23 C 1.38330 * 120.03124 * 359.49460 * 22 7 6 24 24 F 1.35102 * 120.05085 * 180.22837 * 23 22 7 25 25 H 1.09002 * 109.46806 * 300.00217 * 1 2 3 26 26 H 1.08997 * 109.47192 * 59.99716 * 1 2 3 27 27 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47495 * 239.99630 * 2 1 3 29 29 H 1.09000 * 109.47241 * 119.99766 * 2 1 3 30 30 H 1.08003 * 120.01073 * 0.02562 * 5 4 3 31 31 H 1.07997 * 119.94822 * 179.97438 * 6 5 4 32 32 H 1.08997 * 109.46630 * 329.99506 * 8 7 6 33 33 H 1.08998 * 109.46980 * 209.99685 * 8 7 6 34 34 H 1.00901 * 111.00471 * 61.66849 * 9 8 7 35 35 H 0.96990 * 120.00334 * 179.97438 * 15 14 12 36 36 H 1.09008 * 109.47165 * 54.92250 * 20 10 9 37 37 H 1.08999 * 109.47314 * 174.92045 * 20 10 9 38 38 H 1.09002 * 109.47109 * 300.49778 * 21 20 10 39 39 H 1.09000 * 109.47210 * 60.49354 * 21 20 10 40 40 H 1.08994 * 109.47414 * 180.49725 * 21 20 10 41 41 H 1.08008 * 119.98602 * 179.74355 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3542 1.5254 -0.0005 5 6 4.2001 0.4267 -0.0005 6 6 5.5697 0.6100 -0.0005 7 6 6.0982 1.8876 -0.0011 8 6 7.5925 2.0833 -0.0005 9 7 8.0786 2.1460 -1.3853 10 6 9.5460 2.2026 -1.4260 11 1 9.9552 1.6145 -0.6046 12 6 9.9973 3.6343 -1.2923 13 1 9.2671 4.4232 -1.1879 14 6 11.3424 3.9370 -1.3031 15 7 12.2316 2.9763 -1.4297 16 14 11.9017 5.7117 -1.1381 17 1 12.0934 6.0387 0.2976 18 1 13.1844 5.8958 -1.8633 19 1 10.8720 6.6111 -1.7176 20 6 10.0417 1.6338 -2.7570 21 6 9.6934 0.1462 -2.8372 22 6 5.2585 2.9858 0.0036 23 6 3.8866 2.8084 -0.0017 24 9 3.0656 3.8814 -0.0018 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7886 -0.5719 -0.0005 31 1 6.2282 -0.2460 -0.0001 32 1 8.0680 1.2484 0.5141 33 1 7.8369 3.0133 0.5128 34 1 7.6728 2.9287 -1.8759 35 1 13.1778 3.1893 -1.4377 36 1 9.5622 2.1642 -3.5799 37 1 11.1224 1.7582 -2.8254 38 1 10.1656 -0.3827 -2.0093 39 1 8.6120 0.0225 -2.7777 40 1 10.0543 -0.2611 -3.7816 41 1 5.6737 3.9829 0.0073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278595552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:30 Heat of formation + Delta-G solvation = -73.589923 kcal Electronic energy + Delta-G solvation = -21642.774839 eV Core-core repulsion = 18243.882137 eV Total energy + Delta-G solvation = -3398.892702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.63920 -40.04337 -37.96068 -35.96676 -32.94645 -31.97525 -31.27998 -30.53022 -29.29402 -26.49430 -24.63723 -23.89457 -22.49806 -22.08255 -20.87075 -19.51368 -18.42764 -16.93234 -16.63171 -16.43312 -16.37888 -15.25984 -14.86160 -14.85490 -14.26871 -14.16381 -13.86939 -13.62180 -13.25208 -13.01904 -12.85400 -12.61013 -12.37579 -12.02290 -11.85335 -11.62775 -11.43817 -11.21811 -11.10264 -10.93790 -10.82060 -10.78405 -10.67384 -10.15808 -9.61664 -9.54756 -9.10191 -8.82801 -8.40521 -8.01993 -7.30135 -6.02631 -4.15768 1.24457 1.35511 2.97641 3.25419 3.33067 3.35956 3.67082 4.29245 4.37562 4.63610 4.65459 4.82557 4.95767 4.98770 5.16038 5.23147 5.28691 5.40346 5.50365 5.60288 5.63846 5.74918 5.92598 6.08891 6.19669 6.27647 6.38098 6.40900 6.50194 6.69395 6.74739 6.79919 7.10478 7.15758 7.29582 7.40472 7.55745 7.74973 8.05304 8.10028 8.28471 8.60532 8.96397 9.52210 10.97592 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.003591 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.195313 B = 7794.804043 C = 8630.114894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.313 6.313 4 C 0.085 3.915 5 C -0.184 4.184 6 C -0.071 4.071 7 C -0.069 4.069 8 C 0.103 3.897 9 N -0.683 5.683 10 C 0.215 3.785 11 H 0.033 0.967 12 C -0.547 4.547 13 H 0.054 0.946 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.106 4.106 21 C -0.137 4.137 22 C -0.112 4.112 23 C 0.066 3.934 24 F -0.138 7.138 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.329 0.671 35 H 0.262 0.738 36 H 0.030 0.970 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.024 0.976 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.415 -7.065 3.310 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.039 3.961 5 C -0.202 4.202 6 C -0.090 4.090 7 C -0.070 4.070 8 C -0.026 4.026 9 N -0.313 5.313 10 C 0.107 3.893 11 H 0.051 0.949 12 C -0.586 4.586 13 H 0.072 0.928 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.144 4.144 21 C -0.195 4.195 22 C -0.131 4.131 23 C 0.046 3.954 24 F -0.117 7.117 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.146 0.854 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.408 -7.612 3.209 19.268 hybrid contribution 0.521 1.895 0.357 1.997 sum -16.887 -5.717 3.566 18.181 Atomic orbital electron populations 1.21768 0.92772 1.02762 1.03568 1.22792 0.95836 0.81982 1.01498 1.86102 1.18289 1.29281 1.89096 1.18883 0.83096 0.92932 1.01186 1.21091 0.94123 0.97332 1.07702 1.20933 0.93719 0.97426 0.96887 1.19929 0.96792 0.91855 0.98449 1.20738 0.87789 1.01017 0.93059 1.60948 1.10786 1.48525 1.11015 1.19171 0.81005 0.94591 0.94491 0.94912 1.21865 0.92214 0.93552 1.50997 0.92817 1.24928 0.96824 0.97009 0.94712 1.69871 1.01314 1.31489 1.49607 0.86656 0.78215 0.85390 0.78104 1.20742 1.21145 1.19962 1.21493 1.03223 0.92053 0.97670 1.21701 1.00459 0.98826 0.98472 1.20997 0.90019 1.00902 1.01174 1.16937 0.87879 0.80811 1.09794 1.91471 1.72073 1.53663 1.94449 0.91554 0.91493 0.90364 0.91887 0.91982 0.84941 0.84946 0.90852 0.94181 0.85434 0.92840 0.95082 0.89145 0.94505 0.93309 0.95673 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.48 5.46 37.16 0.20 0.68 16 3 O -0.31 -4.12 10.00 -19.59 -0.20 -4.31 16 4 C 0.08 1.19 6.69 -39.18 -0.26 0.93 16 5 C -0.18 -2.26 9.04 -39.45 -0.36 -2.62 16 6 C -0.07 -0.96 9.69 -39.59 -0.38 -1.34 16 7 C -0.07 -1.06 5.44 -104.61 -0.57 -1.63 16 8 C 0.10 1.82 5.64 -4.98 -0.03 1.80 16 9 N -0.68 -13.70 5.67 -109.23 -0.62 -14.32 16 10 C 0.22 5.12 1.97 -68.86 -0.14 4.99 16 11 H 0.03 0.86 7.69 -51.93 -0.40 0.46 16 12 C -0.55 -14.36 8.47 -34.44 -0.29 -14.65 16 13 H 0.05 1.40 7.73 -52.49 -0.41 1.00 16 14 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 15 N -0.88 -24.55 11.30 55.43 0.63 -23.93 16 16 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.11 -2.48 5.45 -26.73 -0.15 -2.62 16 21 C -0.14 -2.75 9.80 37.16 0.36 -2.39 16 22 C -0.11 -1.68 9.67 -39.54 -0.38 -2.06 16 23 C 0.07 1.00 7.31 -39.30 -0.29 0.72 16 24 F -0.14 -2.22 17.11 2.25 0.04 -2.18 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 33 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 34 H 0.33 6.68 8.45 -39.29 -0.33 6.35 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.93 7.77 -51.93 -0.40 0.53 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.14 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -28.25 343.56 -8.30 -36.56 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.32 Total: 4.31 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.99 Total: -17.13 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.01 Total: -38.25 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.25 -8.30 -36.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278595552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.035 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds