Wall clock time and date at job start Tue Mar 31 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46725 * 225.14743 * 3 2 1 5 5 C 1.37101 * 119.99575 * 96.17184 * 4 3 2 6 6 H 1.07999 * 119.99568 * 164.11959 * 5 4 3 7 7 C 1.38946 * 120.00258 * 344.11935 * 5 4 3 8 8 N 1.31418 * 119.99593 * 331.28336 * 7 5 4 9 9 Si 1.86793 * 120.00224 * 151.28562 * 7 5 4 10 10 H 1.48503 * 109.47266 * 94.97636 * 9 7 5 11 11 H 1.48498 * 109.47109 * 214.97965 * 9 7 5 12 12 H 1.48499 * 109.47231 * 334.97950 * 9 7 5 13 13 C 1.34772 * 120.00048 * 276.16574 * 4 3 2 14 14 O 1.21297 * 120.00166 * 185.02875 * 13 4 3 15 15 C 1.50701 * 119.99898 * 5.03237 * 13 4 3 16 16 H 1.09001 * 109.47372 * 16.28794 * 15 13 4 17 17 F 1.39896 * 109.47418 * 256.28191 * 15 13 4 18 18 C 1.53007 * 109.47059 * 136.28631 * 15 13 4 19 19 C 1.52997 * 109.47246 * 184.99895 * 18 15 13 20 20 C 1.52994 * 109.47223 * 184.99632 * 19 18 15 21 21 C 1.52997 * 109.47223 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47178 * 60.00198 * 21 20 19 23 23 C 1.53004 * 109.47266 * 300.00109 * 22 21 20 24 24 C 1.52997 * 109.47111 * 59.99849 * 23 22 21 25 25 H 4.40647 * 5.51417 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47173 * 105.15134 * 3 2 1 27 27 H 1.08998 * 109.47467 * 345.14440 * 3 2 1 28 28 H 0.97005 * 119.99468 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46856 * 64.99405 * 18 15 13 30 30 H 1.09005 * 109.46856 * 305.00219 * 18 15 13 31 31 H 1.08994 * 109.47258 * 304.99833 * 19 18 15 32 32 H 1.09003 * 109.47307 * 300.00298 * 20 19 18 33 33 H 1.09005 * 109.47195 * 59.99871 * 20 19 18 34 34 H 1.09001 * 109.47051 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47222 * 300.00350 * 21 20 19 36 36 H 1.09002 * 109.47553 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.47412 * 60.00150 * 22 21 20 38 38 H 1.08994 * 109.46895 * 299.99828 * 23 22 21 39 39 H 1.08994 * 109.46949 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.47300 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.47222 * 60.00052 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9751 0.9793 5 6 3.4829 0.5642 2.2398 6 1 4.0739 1.2087 2.8735 7 6 3.0761 -0.6815 2.7020 8 7 1.9642 -1.2182 2.2520 9 14 4.1097 -1.5930 3.9629 10 1 3.5906 -1.3114 5.3254 11 1 4.0398 -3.0526 3.6984 12 1 5.5206 -1.1397 3.8674 13 6 3.2397 2.2754 0.6409 14 8 3.7285 3.0668 1.4193 15 6 2.7506 2.7460 -0.7046 16 1 2.0978 1.9889 -1.1392 17 9 3.8446 2.9594 -1.5500 18 6 1.9737 4.0533 -0.5362 19 6 1.3717 4.4658 -1.8809 20 6 0.7011 5.8338 -1.7413 21 6 0.0997 6.2466 -3.0862 22 6 -0.9398 5.2110 -3.5194 23 6 -0.2692 3.8428 -3.6590 24 6 0.3322 3.4300 -2.3141 25 1 -1.0502 -0.0004 -0.0001 26 1 3.0093 0.2694 -0.9919 27 1 3.0099 -0.9925 0.2635 28 1 1.6801 -2.0877 2.5749 29 1 2.6483 4.8342 -0.1852 30 1 1.1745 3.9099 0.1911 31 1 2.1612 4.5229 -2.6302 32 1 -0.0885 5.7767 -0.9920 33 1 1.4417 6.5718 -1.4331 34 1 -0.3777 7.2215 -2.9869 35 1 0.8896 6.3038 -3.8352 36 1 -1.3686 5.5052 -4.4774 37 1 -1.7297 5.1537 -2.7705 38 1 0.5206 3.9001 -4.4079 39 1 -1.0099 3.1050 -3.9672 40 1 0.8095 2.4552 -2.4134 41 1 -0.4577 3.3728 -1.5651 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281622491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:02 Heat of formation + Delta-G solvation = -63.487985 kcal Electronic energy + Delta-G solvation = -22914.003707 eV Core-core repulsion = 19515.549058 eV Total energy + Delta-G solvation = -3398.454649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.84717 -40.54606 -39.52627 -37.23215 -34.59328 -33.99856 -33.11263 -31.62873 -30.12189 -28.34576 -26.98859 -25.05281 -23.44104 -21.99176 -20.90152 -20.56656 -19.78966 -18.85192 -18.26362 -17.36773 -16.94407 -16.48707 -16.18374 -15.96633 -15.47585 -15.16206 -15.10998 -14.92494 -14.73098 -14.18188 -14.09456 -13.85005 -13.62507 -13.30090 -13.11144 -12.90568 -12.86421 -12.60259 -12.47868 -12.16992 -12.00373 -11.95213 -11.80033 -11.31061 -11.20280 -11.13579 -10.94220 -10.80332 -10.72913 -10.33731 -9.94665 -8.45872 -5.98252 1.28444 1.41945 1.54048 1.69871 1.99690 2.26743 2.31730 2.84684 2.93391 3.49874 3.61553 3.67005 3.74938 3.81750 3.92330 4.04408 4.11032 4.38851 4.47303 4.50427 4.53196 4.59378 4.66384 4.68596 4.78917 4.81362 4.92067 5.02075 5.10361 5.21108 5.30737 5.33540 5.34631 5.35631 5.41770 5.42975 5.50525 5.64195 5.91604 6.31506 7.01864 7.07552 7.25864 7.81047 8.54002 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.004804 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.846621 B = 5826.942197 C = 6371.981953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.173 4.173 3 C 0.226 3.774 4 N -0.432 5.432 5 C -0.369 4.369 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.851 5.851 9 Si 0.979 3.021 10 H -0.276 1.276 11 H -0.263 1.263 12 H -0.273 1.273 13 C 0.403 3.597 14 O -0.619 6.619 15 C 0.093 3.907 16 H 0.111 0.889 17 F -0.207 7.207 18 C -0.118 4.118 19 C -0.079 4.079 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.118 4.118 25 H 0.238 0.762 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.278 0.722 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 5.332 -12.482 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.174 4.174 3 C 0.104 3.896 4 N -0.149 5.149 5 C -0.495 4.495 6 H 0.094 0.906 7 C -0.191 4.191 8 N -0.486 5.486 9 Si 0.802 3.198 10 H -0.202 1.202 11 H -0.187 1.187 12 H -0.198 1.198 13 C 0.192 3.808 14 O -0.506 6.506 15 C 0.054 3.946 16 H 0.128 0.872 17 F -0.188 7.188 18 C -0.156 4.156 19 C -0.097 4.097 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.156 4.156 25 H 0.255 0.745 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.419 5.501 -12.104 15.225 hybrid contribution 0.560 -0.633 1.131 1.412 sum -6.859 4.868 -10.973 13.826 Atomic orbital electron populations 1.25170 0.96173 1.00400 1.01610 1.23173 0.94618 1.00459 0.99193 1.18372 0.85435 0.94693 0.91093 1.44014 1.53989 1.05116 1.11776 1.19530 1.34048 1.02836 0.93124 0.90635 1.25943 0.95511 0.97490 1.00106 1.70240 1.16939 1.17802 1.43578 0.85177 0.78903 0.77847 0.77901 1.20223 1.18718 1.19796 1.21194 0.86255 0.82462 0.90926 1.90479 1.50539 1.54335 1.55292 1.21720 0.85498 1.01130 0.86234 0.87161 1.92778 1.57595 1.96451 1.72003 1.21950 0.99229 0.94573 0.99852 1.21116 0.97765 0.96436 0.94395 1.21554 0.99777 0.95075 0.98582 1.21515 0.98688 0.98940 0.96099 1.21544 0.97801 0.94442 1.01731 1.21505 1.00098 0.97494 0.96117 1.21659 0.97928 0.97628 0.98341 0.74536 0.89043 0.88617 0.91237 0.91571 0.91056 0.90929 0.92012 0.92136 0.90907 0.91818 0.90760 0.92074 0.91846 0.91128 0.92805 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.83 19.25 74.32 1.43 -6.40 16 2 C -0.17 -7.22 10.51 31.13 0.33 -6.89 16 3 C 0.23 9.95 4.77 84.57 0.40 10.35 16 4 N -0.43 -22.56 2.60 -645.40 -1.68 -24.24 16 5 C -0.37 -20.90 9.31 84.04 0.78 -20.12 16 6 H 0.08 4.66 7.40 -2.91 -0.02 4.64 16 7 C 0.02 0.82 4.67 84.92 0.40 1.22 16 8 N -0.85 -42.93 9.94 21.66 0.22 -42.71 16 9 Si 0.98 40.99 29.64 68.60 2.03 43.02 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.40 20.82 6.91 87.66 0.61 21.43 16 14 O -0.62 -36.87 16.20 -3.08 -0.05 -36.92 16 15 C 0.09 3.74 2.90 29.85 0.09 3.83 16 16 H 0.11 4.02 3.61 -2.39 -0.01 4.01 16 17 F -0.21 -8.36 16.66 44.97 0.75 -7.61 16 18 C -0.12 -4.13 4.14 30.60 0.13 -4.00 16 19 C -0.08 -2.08 2.15 -10.79 -0.02 -2.10 16 20 C -0.11 -2.50 5.20 30.59 0.16 -2.34 16 21 C -0.11 -2.01 5.92 30.59 0.18 -1.83 16 22 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 23 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 24 C -0.12 -2.82 4.97 30.60 0.15 -2.67 16 25 H 0.24 6.45 7.80 -4.41 -0.03 6.42 16 26 H 0.09 3.43 6.90 -2.39 -0.02 3.41 16 27 H 0.10 4.39 6.53 -2.39 -0.02 4.38 16 28 H 0.28 13.05 8.31 -92.70 -0.77 12.28 16 29 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 30 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.07 1.96 7.81 -2.39 -0.02 1.94 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.39 6.46 -2.39 -0.02 1.37 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -66.12 333.21 7.27 -58.86 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.01 Total: 22.83 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.99 Total: -13.23 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -1.46 Total: -66.95 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.05 Total: -36.92 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 0.75 Total: -7.61 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -66.12 7.27 -58.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281622491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.629 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds