Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46882 * 2 1 4 4 C 1.50701 * 109.47045 * 240.00344 * 2 1 3 5 5 H 1.07995 * 119.99869 * 240.00249 * 4 2 1 6 6 C 1.37880 * 119.99942 * 59.99691 * 4 2 1 7 7 N 1.31513 * 120.00163 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47269 * 89.99840 * 8 6 4 10 10 H 1.48503 * 109.47473 * 210.00239 * 8 6 4 11 11 H 1.48501 * 109.47093 * 330.00112 * 8 6 4 12 12 N 1.46896 * 109.47093 * 120.00058 * 2 1 3 13 13 C 1.46900 * 110.99969 * 58.95862 * 12 2 1 14 14 C 1.46900 * 111.00274 * 294.99958 * 12 2 1 15 15 C 1.52996 * 109.47112 * 288.23833 * 14 12 2 16 16 H 1.09004 * 109.46918 * 58.22146 * 15 14 12 17 17 O 1.42899 * 109.47105 * 298.22505 * 15 14 12 18 18 C 1.52994 * 109.47436 * 178.22214 * 15 14 12 19 19 C 1.50702 * 109.47396 * 184.99982 * 18 15 14 20 20 C 1.38240 * 119.97055 * 90.00390 * 19 18 15 21 21 C 1.38203 * 120.02526 * 180.02562 * 20 19 18 22 22 C 1.38459 * 119.96908 * 359.97280 * 21 20 19 23 23 F 1.35102 * 120.02402 * 179.97438 * 22 21 20 24 24 C 1.38459 * 119.95374 * 0.25132 * 22 21 20 25 25 C 1.38201 * 119.96975 * 359.52400 * 24 22 21 26 26 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46920 * 299.99790 * 1 2 3 28 28 H 1.08992 * 109.47187 * 59.99631 * 1 2 3 29 29 H 0.96999 * 119.99953 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46926 * 290.35615 * 13 12 2 31 31 H 1.09002 * 109.47612 * 50.35860 * 13 12 2 32 32 H 1.09006 * 109.47270 * 170.36180 * 13 12 2 33 33 H 1.09006 * 109.46966 * 168.24156 * 14 12 2 34 34 H 1.08991 * 109.46727 * 48.24080 * 14 12 2 35 35 H 0.96704 * 114.00265 * 299.99667 * 17 15 14 36 36 H 1.09007 * 109.46713 * 64.99899 * 18 15 14 37 37 H 1.08998 * 109.47261 * 305.00251 * 18 15 14 38 38 H 1.07997 * 119.99251 * 359.97212 * 20 19 18 39 39 H 1.07999 * 120.01660 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.01291 * 179.72114 * 24 22 21 41 41 H 1.07998 * 119.98643 * 180.23322 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4865 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2458 14 6 1.6488 0.0391 2.4181 15 6 2.4857 1.3157 2.5212 16 1 2.3237 1.9289 1.6346 17 8 3.8694 0.9718 2.6161 18 6 2.0685 2.0999 3.7668 19 6 2.8045 3.4145 3.8028 20 6 2.2551 4.5303 3.1993 21 6 2.9294 5.7362 3.2312 22 6 4.1553 5.8266 3.8684 23 9 4.8156 7.0049 3.8998 24 6 4.7067 4.7073 4.4686 25 6 4.0284 3.5036 4.4394 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7086 1.1613 -3.4844 30 1 0.4551 -2.0744 1.4357 31 1 1.7279 -2.5648 0.2921 32 1 2.0377 -2.6160 2.0442 33 1 1.8349 -0.5887 3.2895 34 1 0.5914 0.3001 2.3774 35 1 4.0871 0.4252 3.3835 36 1 2.3126 1.5222 4.6584 37 1 0.9948 2.2853 3.7368 38 1 1.2991 4.4594 2.7019 39 1 2.5003 6.6078 2.7592 40 1 5.6649 4.7757 4.9620 41 1 4.4565 2.6312 4.9107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292675739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = -69.262611 kcal Electronic energy + Delta-G solvation = -22133.352061 eV Core-core repulsion = 18734.647005 eV Total energy + Delta-G solvation = -3398.705056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.89015 -39.41843 -37.89901 -35.94443 -32.69212 -32.44759 -31.13893 -29.43705 -28.52712 -26.20507 -25.15960 -23.58079 -23.06849 -21.99315 -21.00107 -19.04193 -17.67409 -16.53624 -16.26007 -16.14605 -15.60386 -15.38460 -15.09981 -14.72574 -14.48638 -14.12226 -13.81508 -13.64084 -13.48493 -13.19003 -12.74376 -12.31455 -11.97355 -11.80941 -11.60290 -11.59148 -11.27899 -11.03472 -10.97010 -10.78876 -10.69237 -10.56633 -10.43005 -10.02859 -9.69100 -9.60795 -9.10593 -8.84430 -8.44986 -8.35836 -7.08845 -5.99219 -4.01822 1.13993 1.23503 3.32353 3.39236 3.43920 3.56552 4.25841 4.42805 4.57925 4.66427 4.84367 4.90205 4.98970 5.22152 5.27968 5.33022 5.40560 5.54324 5.65269 5.75589 5.80892 5.90343 6.07234 6.08483 6.10456 6.18315 6.23263 6.38039 6.43655 6.61592 6.66211 6.80867 6.87095 6.89081 7.12202 7.48524 7.70904 7.84903 8.12045 8.16234 8.40239 8.62568 9.03689 9.62838 11.08233 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.004078 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.163787 B = 6865.262934 C = 7576.516892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.210 3.790 3 H 0.041 0.959 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.526 5.526 13 C 0.035 3.965 14 C 0.020 3.980 15 C 0.120 3.880 16 H 0.103 0.897 17 O -0.539 6.539 18 C -0.115 4.115 19 C -0.076 4.076 20 C -0.088 4.088 21 C -0.151 4.151 22 C 0.086 3.914 23 F -0.145 7.145 24 C -0.154 4.154 25 C -0.077 4.077 26 H 0.029 0.971 27 H 0.007 0.993 28 H 0.088 0.912 29 H 0.259 0.741 30 H 0.011 0.989 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.360 0.640 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 5.062 15.452 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.103 3.897 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.249 5.249 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.060 3.940 16 H 0.121 0.879 17 O -0.341 6.341 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.106 4.106 21 C -0.170 4.170 22 C 0.067 3.933 23 F -0.124 7.124 24 C -0.172 4.172 25 C -0.095 4.095 26 H 0.048 0.952 27 H 0.026 0.974 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.205 0.795 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.277 5.557 14.718 15.896 hybrid contribution -0.671 -0.444 -0.385 0.892 sum 1.606 5.113 14.333 15.302 Atomic orbital electron populations 1.22424 1.01169 0.99313 1.00389 1.19318 0.89336 0.94818 0.86188 0.94148 1.21115 1.30358 1.12395 0.89713 0.91971 1.24914 0.95270 0.95130 0.98976 1.69874 1.37217 1.23096 1.23338 0.86541 0.79266 0.79273 0.82599 1.20892 1.21307 1.19819 1.62276 1.59251 1.01542 1.01811 1.22226 0.96098 0.91139 1.01862 1.22759 0.97641 0.95683 0.94784 1.21919 0.81716 0.94059 0.96302 0.87895 1.86705 1.24258 1.72836 1.50343 1.21410 1.00341 0.93471 1.00083 1.19834 0.95288 0.95138 0.97384 1.20973 1.00205 0.91413 0.98039 1.21110 0.94568 0.99636 1.01712 1.17714 0.92430 0.81557 1.01646 1.91476 1.80483 1.45467 1.94978 1.21095 1.01325 0.92307 1.02513 1.20846 0.93830 0.96641 0.98159 0.95237 0.97411 0.89328 0.93069 0.97055 0.90420 0.94135 0.92381 0.94345 0.79498 0.90684 0.89993 0.84939 0.84923 0.85048 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.31 37.16 0.31 -3.79 16 2 C 0.21 5.17 2.23 -68.86 -0.15 5.02 16 3 H 0.04 1.11 6.49 -51.93 -0.34 0.77 16 4 C -0.50 -13.61 7.80 -34.44 -0.27 -13.87 16 5 H 0.06 1.72 6.82 -52.49 -0.36 1.36 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -10.97 4.60 -236.28 -1.09 -12.05 16 13 C 0.04 0.68 8.65 60.06 0.52 1.20 16 14 C 0.02 0.34 4.49 -3.83 -0.02 0.32 16 15 C 0.12 1.86 2.97 -26.74 -0.08 1.78 16 16 H 0.10 1.96 6.60 -51.93 -0.34 1.61 16 17 O -0.54 -8.66 12.73 -35.23 -0.45 -9.10 16 18 C -0.11 -1.33 5.03 -27.89 -0.14 -1.47 16 19 C -0.08 -0.93 4.97 -104.62 -0.52 -1.45 16 20 C -0.09 -1.08 9.70 -39.59 -0.38 -1.47 16 21 C -0.15 -1.85 10.03 -39.51 -0.40 -2.24 16 22 C 0.09 1.09 7.30 -39.42 -0.29 0.80 16 23 F -0.15 -1.91 17.27 2.25 0.04 -1.87 16 24 C -0.15 -1.78 10.03 -39.51 -0.40 -2.18 16 25 C -0.08 -0.87 9.40 -39.59 -0.37 -1.24 16 26 H 0.03 0.68 6.61 -51.93 -0.34 0.33 16 27 H 0.01 0.15 6.30 -51.93 -0.33 -0.18 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.01 0.21 6.83 -51.93 -0.35 -0.15 16 31 H 0.08 1.63 6.29 -51.93 -0.33 1.31 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 34 H 0.04 0.65 5.98 -51.93 -0.31 0.34 16 35 H 0.36 4.25 9.05 45.56 0.41 4.66 16 36 H 0.07 0.71 8.09 -51.92 -0.42 0.29 16 37 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -30.29 332.87 -8.26 -38.55 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.11 Total: 4.92 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -2.28 Total: -17.10 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.46 Total: -36.87 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.45 Total: -9.10 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.29 -8.26 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.715 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds