Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46882 * 2 1 4 4 C 1.50701 * 109.47045 * 240.00344 * 2 1 3 5 5 H 1.07995 * 119.99869 * 240.00249 * 4 2 1 6 6 C 1.37880 * 119.99942 * 59.99691 * 4 2 1 7 7 N 1.31513 * 120.00163 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99934 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47269 * 89.99840 * 8 6 4 10 10 H 1.48503 * 109.47473 * 210.00239 * 8 6 4 11 11 H 1.48501 * 109.47093 * 330.00112 * 8 6 4 12 12 N 1.46896 * 109.47093 * 120.00058 * 2 1 3 13 13 C 1.46900 * 110.99969 * 58.95862 * 12 2 1 14 14 C 1.46900 * 111.00274 * 294.99958 * 12 2 1 15 15 C 1.52996 * 109.47112 * 288.23833 * 14 12 2 16 16 H 1.09004 * 109.46918 * 58.22146 * 15 14 12 17 17 O 1.42899 * 109.47105 * 298.22505 * 15 14 12 18 18 C 1.52994 * 109.47436 * 178.22214 * 15 14 12 19 19 C 1.50702 * 109.47396 * 184.99982 * 18 15 14 20 20 C 1.38240 * 119.97055 * 90.00390 * 19 18 15 21 21 C 1.38203 * 120.02526 * 180.02562 * 20 19 18 22 22 C 1.38459 * 119.96908 * 359.97280 * 21 20 19 23 23 F 1.35102 * 120.02402 * 179.97438 * 22 21 20 24 24 C 1.38459 * 119.95374 * 0.25132 * 22 21 20 25 25 C 1.38201 * 119.96975 * 359.52400 * 24 22 21 26 26 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46920 * 299.99790 * 1 2 3 28 28 H 1.08992 * 109.47187 * 59.99631 * 1 2 3 29 29 H 0.96999 * 119.99953 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46926 * 290.35615 * 13 12 2 31 31 H 1.09002 * 109.47612 * 50.35860 * 13 12 2 32 32 H 1.09006 * 109.47270 * 170.36180 * 13 12 2 33 33 H 1.09006 * 109.46966 * 168.24156 * 14 12 2 34 34 H 1.08991 * 109.46727 * 48.24080 * 14 12 2 35 35 H 0.96704 * 114.00265 * 299.99667 * 17 15 14 36 36 H 1.09007 * 109.46713 * 64.99899 * 18 15 14 37 37 H 1.08998 * 109.47261 * 305.00251 * 18 15 14 38 38 H 1.07997 * 119.99251 * 359.97212 * 20 19 18 39 39 H 1.07999 * 120.01660 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.01291 * 179.72114 * 24 22 21 41 41 H 1.07998 * 119.98643 * 180.23322 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4865 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2458 14 6 1.6488 0.0391 2.4181 15 6 2.4857 1.3157 2.5212 16 1 2.3237 1.9289 1.6346 17 8 3.8694 0.9718 2.6161 18 6 2.0685 2.0999 3.7668 19 6 2.8045 3.4145 3.8028 20 6 2.2551 4.5303 3.1993 21 6 2.9294 5.7362 3.2312 22 6 4.1553 5.8266 3.8684 23 9 4.8156 7.0049 3.8998 24 6 4.7067 4.7073 4.4686 25 6 4.0284 3.5036 4.4394 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7086 1.1613 -3.4844 30 1 0.4551 -2.0744 1.4357 31 1 1.7279 -2.5648 0.2921 32 1 2.0377 -2.6160 2.0442 33 1 1.8349 -0.5887 3.2895 34 1 0.5914 0.3001 2.3774 35 1 4.0871 0.4252 3.3835 36 1 2.3126 1.5222 4.6584 37 1 0.9948 2.2853 3.7368 38 1 1.2991 4.4594 2.7019 39 1 2.5003 6.6078 2.7592 40 1 5.6649 4.7757 4.9620 41 1 4.4565 2.6312 4.9107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292675739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = -89.153233 kcal Electronic energy + Delta-G solvation = -22134.214583 eV Core-core repulsion = 18734.647005 eV Total energy + Delta-G solvation = -3399.567578 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.87665 -40.42000 -39.28028 -37.37000 -34.62642 -33.51422 -32.03409 -30.96053 -30.08852 -27.55823 -27.05303 -25.12214 -23.97537 -23.30352 -22.00994 -20.75827 -18.61981 -18.28657 -17.49879 -17.35700 -16.93140 -16.59148 -16.32046 -16.08770 -15.95422 -15.49123 -15.10303 -14.86673 -14.47543 -14.41908 -14.24118 -13.82612 -13.49582 -13.12660 -12.99823 -12.73338 -12.66793 -12.61447 -12.56375 -12.43951 -12.23487 -12.01155 -11.90574 -11.84000 -11.36396 -10.92173 -10.73352 -10.45181 -10.00869 -9.42010 -8.71096 -8.09232 -6.18473 0.19533 0.33384 1.41177 1.43017 1.53191 2.44019 2.63310 3.20298 3.33116 3.35970 3.76280 3.79794 3.88366 4.00344 4.15526 4.28385 4.40768 4.43493 4.49428 4.63882 4.68736 4.70890 4.82374 4.85960 4.93125 4.99934 5.02023 5.15591 5.18050 5.20013 5.24816 5.29226 5.32699 5.59093 5.65527 5.74808 5.83572 5.98970 6.26182 6.54601 6.82390 6.96146 7.16974 7.50462 8.96931 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.004078 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.163787 B = 6865.262934 C = 7576.516892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.540 5.540 13 C 0.038 3.962 14 C 0.021 3.979 15 C 0.128 3.872 16 H 0.057 0.943 17 O -0.560 6.560 18 C -0.101 4.101 19 C -0.087 4.087 20 C -0.103 4.103 21 C -0.162 4.162 22 C 0.066 3.934 23 F -0.152 7.152 24 C -0.157 4.157 25 C -0.078 4.078 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.058 0.942 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.380 0.620 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 3.870 17.151 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.110 3.890 3 H 0.024 0.976 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.263 5.263 13 C -0.110 4.110 14 C -0.107 4.107 15 C 0.068 3.932 16 H 0.075 0.925 17 O -0.366 6.366 18 C -0.139 4.139 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.180 4.180 22 C 0.047 3.953 23 F -0.130 7.130 24 C -0.175 4.175 25 C -0.095 4.095 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.228 0.772 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.629 4.350 16.443 17.211 hybrid contribution -0.742 -0.074 -0.861 1.139 sum 1.887 4.276 15.582 16.267 Atomic orbital electron populations 1.22207 1.00548 0.99075 1.00032 1.18999 0.89605 0.93057 0.87364 0.97631 1.21433 1.30247 1.12293 0.91228 0.92775 1.25653 0.95541 0.95835 1.01737 1.70004 1.38104 1.24204 1.23819 0.85611 0.78826 0.78314 0.79217 1.20005 1.21136 1.19607 1.62154 1.59689 1.02391 1.02074 1.22211 0.96796 0.90268 1.01711 1.22882 0.97633 0.96305 0.93898 1.21662 0.81597 0.93402 0.96489 0.92468 1.86657 1.24437 1.73551 1.51960 1.21286 1.00665 0.92849 0.99123 1.20028 0.95864 0.95294 0.97538 1.21175 1.00717 0.91792 0.98401 1.21295 0.94712 1.00171 1.01862 1.17979 0.92867 0.81867 1.02552 1.91455 1.80603 1.45879 1.95110 1.21388 1.02092 0.91991 1.02073 1.21164 0.93345 0.97354 0.97667 0.95178 0.95081 0.92328 0.93131 0.96562 0.92966 0.90847 0.88820 0.94509 0.77171 0.87470 0.89206 0.84494 0.83980 0.83106 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.56 8.31 71.98 0.60 -6.96 16 2 C 0.22 10.86 2.23 44.17 0.10 10.96 16 3 H 0.01 0.33 6.49 -2.39 -0.02 0.32 16 4 C -0.51 -28.52 7.80 25.60 0.20 -28.32 16 5 H 0.05 3.02 6.82 -2.91 -0.02 3.00 16 6 C 0.01 0.59 5.30 84.66 0.45 1.03 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 8 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 N -0.54 -21.96 4.60 -901.47 -4.14 -26.10 16 13 C 0.04 1.40 8.65 127.69 1.11 2.51 16 14 C 0.02 0.65 4.49 86.30 0.39 1.04 16 15 C 0.13 3.81 2.97 30.59 0.09 3.90 16 16 H 0.06 2.24 6.60 -2.38 -0.02 2.22 16 17 O -0.56 -16.98 12.73 -148.98 -1.90 -18.88 16 18 C -0.10 -2.08 5.03 29.85 0.15 -1.93 16 19 C -0.09 -1.98 4.97 -19.86 -0.10 -2.08 16 20 C -0.10 -2.50 9.70 22.26 0.22 -2.28 16 21 C -0.16 -3.94 10.03 22.31 0.22 -3.72 16 22 C 0.07 1.66 7.30 22.38 0.16 1.82 16 23 F -0.15 -3.95 17.27 44.97 0.78 -3.18 16 24 C -0.16 -3.40 10.03 22.31 0.22 -3.17 16 25 C -0.08 -1.59 9.40 22.26 0.21 -1.38 16 26 H 0.03 1.37 6.61 -2.39 -0.02 1.36 16 27 H 0.03 1.28 6.30 -2.39 -0.02 1.26 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.02 0.56 6.83 -2.39 -0.02 0.55 16 31 H 0.05 2.16 6.29 -2.39 -0.01 2.14 16 32 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.09 2.24 8.00 -2.38 -0.02 2.22 16 34 H 0.04 1.16 5.98 -2.39 -0.01 1.15 16 35 H 0.38 7.71 9.05 -74.05 -0.67 7.04 16 36 H 0.11 1.53 8.09 -2.38 -0.02 1.51 16 37 H 0.09 1.71 8.08 -2.39 -0.02 1.70 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -66.42 332.87 1.39 -65.03 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.37 Total: 18.47 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.02 Total: -28.58 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -3.90 Total: -79.31 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.90 Total: -18.88 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.42 1.39 -65.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.119 kcal (2) G-P(sol) polarization free energy of solvation -66.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds