Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.50704 * 109.47264 * 120.00680 * 2 1 3 5 5 H 1.08002 * 119.99938 * 120.00038 * 4 2 1 6 6 C 1.37873 * 119.99613 * 299.99777 * 4 2 1 7 7 N 1.31514 * 120.00383 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99671 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47306 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47354 * 120.00046 * 8 6 4 11 11 H 1.48504 * 109.47021 * 239.99575 * 8 6 4 12 12 N 1.46902 * 109.46807 * 240.00407 * 2 1 3 13 13 C 1.46903 * 111.00110 * 306.04354 * 12 2 1 14 14 C 1.46900 * 111.00174 * 70.00307 * 12 2 1 15 15 C 1.52995 * 109.47403 * 75.87672 * 14 12 2 16 16 H 1.08996 * 109.47161 * 300.55164 * 15 14 12 17 17 O 1.42902 * 109.47044 * 60.55351 * 15 14 12 18 18 C 1.53001 * 109.46874 * 180.55222 * 15 14 12 19 19 C 1.50703 * 109.46758 * 175.00239 * 18 15 14 20 20 C 1.38239 * 119.97833 * 90.00085 * 19 18 15 21 21 C 1.38197 * 120.03206 * 180.02562 * 20 19 18 22 22 C 1.38460 * 119.96865 * 0.22334 * 21 20 19 23 23 F 1.35099 * 120.02519 * 179.72652 * 22 21 20 24 24 C 1.38459 * 119.94927 * 359.50326 * 22 21 20 25 25 C 1.38193 * 119.97444 * 0.52224 * 24 22 21 26 26 H 1.08994 * 109.46861 * 299.99548 * 1 2 3 27 27 H 1.08995 * 109.47150 * 59.99449 * 1 2 3 28 28 H 1.08997 * 109.46997 * 179.97438 * 1 2 3 29 29 H 0.96997 * 120.00089 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47273 * 189.36962 * 13 12 2 31 31 H 1.09001 * 109.47079 * 309.37543 * 13 12 2 32 32 H 1.09003 * 109.46610 * 69.37062 * 13 12 2 33 33 H 1.09005 * 109.46582 * 315.87535 * 14 12 2 34 34 H 1.09000 * 109.47172 * 195.88402 * 14 12 2 35 35 H 0.96702 * 113.99996 * 60.00185 * 17 15 14 36 36 H 1.08999 * 109.47156 * 55.00659 * 18 15 14 37 37 H 1.08998 * 109.47396 * 294.99505 * 18 15 14 38 38 H 1.08005 * 119.98640 * 359.97360 * 20 19 18 39 39 H 1.07994 * 120.01560 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.01146 * 180.25172 * 24 22 21 41 41 H 1.08001 * 119.98960 * 179.70455 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9437 0.8300 2.6035 8 14 2.3226 -1.1199 4.0077 9 1 3.1475 -2.2867 3.6035 10 1 3.1474 -0.1862 4.8160 11 1 1.1679 -1.5869 4.8164 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4091 15 6 2.7495 1.2553 -2.4922 16 1 2.6495 1.8848 -1.6081 17 8 4.0789 0.7356 -2.5591 18 6 2.4628 2.0858 -3.7448 19 6 3.3629 3.2944 -3.7628 20 6 4.6010 3.2245 -4.3737 21 6 5.4275 4.3320 -4.3904 22 6 5.0169 5.5106 -3.7909 23 9 5.8263 6.5923 -3.8018 24 6 3.7743 5.5812 -3.1843 25 6 2.9498 4.4723 -3.1684 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7091 1.1611 3.4845 30 1 1.9341 -2.5864 -2.1046 31 1 1.5626 -2.5650 -0.3639 32 1 0.3716 -1.9512 -1.5357 33 1 0.7382 0.4935 -2.3679 34 1 1.8595 -0.5377 -3.2885 35 1 4.2402 0.1650 -3.3230 36 1 1.4217 2.4083 -3.7365 37 1 2.6490 1.4810 -4.6322 38 1 4.9230 2.3037 -4.8374 39 1 6.3949 4.2770 -4.8674 40 1 3.4513 6.5012 -2.7200 41 1 1.9824 4.5256 -2.6911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292675745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -70.131764 kcal Electronic energy + Delta-G solvation = -22098.886122 eV Core-core repulsion = 18700.143377 eV Total energy + Delta-G solvation = -3398.742745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.89490 -39.41654 -37.87676 -35.95532 -32.69500 -32.45188 -31.14389 -29.48110 -28.47331 -26.17654 -25.21070 -23.59004 -23.07196 -21.95916 -20.99731 -19.05994 -17.67862 -16.53699 -16.27227 -16.14219 -15.60463 -15.37237 -15.09670 -14.72917 -14.48280 -14.12904 -13.81188 -13.65341 -13.49707 -13.20091 -12.70046 -12.32876 -12.00359 -11.79335 -11.60643 -11.58895 -11.29652 -11.00213 -10.97139 -10.81802 -10.66722 -10.55743 -10.40990 -10.05933 -9.69532 -9.62404 -9.11130 -8.86298 -8.45346 -8.35342 -7.09066 -5.98729 -4.01079 1.13578 1.23057 3.32221 3.40208 3.45165 3.56140 4.25418 4.43198 4.57746 4.65995 4.83967 4.90072 4.98529 5.21879 5.27578 5.33558 5.40268 5.54163 5.65174 5.74599 5.80804 5.89845 6.06873 6.07825 6.09986 6.17290 6.22813 6.36583 6.43017 6.61196 6.65133 6.79787 6.85865 6.88648 7.12101 7.45697 7.70399 7.86835 8.12414 8.17481 8.39968 8.62442 9.05047 9.63718 11.08776 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.004070 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.177955 B = 6878.309455 C = 7590.270996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.525 5.525 13 C 0.036 3.964 14 C 0.021 3.979 15 C 0.121 3.879 16 H 0.102 0.898 17 O -0.538 6.538 18 C -0.115 4.115 19 C -0.076 4.076 20 C -0.077 4.077 21 C -0.154 4.154 22 C 0.086 3.914 23 F -0.145 7.145 24 C -0.152 4.152 25 C -0.088 4.088 26 H 0.088 0.912 27 H 0.006 0.994 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.012 0.988 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.360 0.640 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 4.931 -15.483 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.248 5.248 13 C -0.112 4.112 14 C -0.108 4.108 15 C 0.061 3.939 16 H 0.120 0.880 17 O -0.341 6.341 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.095 4.095 21 C -0.173 4.173 22 C 0.067 3.933 23 F -0.124 7.124 24 C -0.171 4.171 25 C -0.106 4.106 26 H 0.107 0.893 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.205 0.795 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.410 5.371 -14.729 16.044 hybrid contribution -0.658 -0.355 0.357 0.829 sum 2.752 5.016 -14.371 15.468 Atomic orbital electron populations 1.22418 1.01088 0.99371 1.00345 1.19326 0.89386 0.94646 0.86281 0.94343 1.21142 1.30114 1.12371 0.89621 0.91940 1.24917 0.95297 0.95167 0.98988 1.69885 1.37376 1.23168 1.23211 0.86483 0.78500 0.79723 0.82967 1.19733 1.21076 1.21264 1.62261 1.58603 1.02023 1.01941 1.22215 0.95545 0.91825 1.01635 1.22745 0.97375 0.95931 0.94766 1.21906 0.82716 0.93055 0.96217 0.88009 1.86706 1.29144 1.67957 1.50275 1.21413 0.99065 0.94781 1.00060 1.19838 0.95386 0.94932 0.97490 1.20846 0.92922 0.97488 0.98203 1.21095 1.01358 0.92345 1.02457 1.17714 0.89797 0.84057 1.01760 1.91475 1.72453 1.53511 1.94961 1.21107 0.93434 1.00518 1.01992 1.20972 0.99951 0.91715 0.97998 0.89325 0.97553 0.95102 0.93143 0.94079 0.90624 0.97001 0.94371 0.92402 0.79529 0.89990 0.90683 0.85187 0.85050 0.84930 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.26 37.16 0.31 -3.79 16 2 C 0.21 5.18 2.22 -68.86 -0.15 5.02 16 3 H 0.04 1.05 6.63 -51.93 -0.34 0.70 16 4 C -0.49 -13.55 7.83 -34.44 -0.27 -13.82 16 5 H 0.06 1.74 7.17 -52.49 -0.38 1.37 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.53 -10.93 4.51 -236.28 -1.07 -12.00 16 13 C 0.04 0.69 8.48 60.07 0.51 1.20 16 14 C 0.02 0.35 4.54 -3.83 -0.02 0.33 16 15 C 0.12 1.86 3.02 -26.73 -0.08 1.78 16 16 H 0.10 1.92 6.78 -51.93 -0.35 1.57 16 17 O -0.54 -8.62 12.71 -35.23 -0.45 -9.07 16 18 C -0.12 -1.32 5.03 -27.88 -0.14 -1.46 16 19 C -0.08 -0.92 4.97 -104.62 -0.52 -1.44 16 20 C -0.08 -0.87 9.40 -39.60 -0.37 -1.24 16 21 C -0.15 -1.78 10.03 -39.51 -0.40 -2.17 16 22 C 0.09 1.09 7.30 -39.42 -0.29 0.80 16 23 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 24 C -0.15 -1.84 10.03 -39.52 -0.40 -2.24 16 25 C -0.09 -1.08 9.70 -39.59 -0.38 -1.46 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 27 H 0.01 0.12 6.45 -51.93 -0.34 -0.22 16 28 H 0.03 0.71 6.54 -51.93 -0.34 0.37 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.58 6.66 -51.93 -0.35 1.24 16 32 H 0.01 0.21 6.79 -51.93 -0.35 -0.14 16 33 H 0.04 0.65 6.17 -51.93 -0.32 0.33 16 34 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 35 H 0.36 4.24 9.05 45.56 0.41 4.65 16 36 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -30.37 333.85 -8.30 -38.67 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.17 Total: 4.58 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.30 Total: -17.00 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.44 Total: -36.86 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.45 Total: -9.07 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.37 -8.30 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.466 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds