Wall clock time and date at job start Tue Mar 31 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.50704 * 109.47264 * 120.00680 * 2 1 3 5 5 H 1.08002 * 119.99938 * 120.00038 * 4 2 1 6 6 C 1.37873 * 119.99613 * 299.99777 * 4 2 1 7 7 N 1.31514 * 120.00383 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99671 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47306 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47354 * 120.00046 * 8 6 4 11 11 H 1.48504 * 109.47021 * 239.99575 * 8 6 4 12 12 N 1.46902 * 109.46807 * 240.00407 * 2 1 3 13 13 C 1.46903 * 111.00110 * 306.04354 * 12 2 1 14 14 C 1.46900 * 111.00174 * 70.00307 * 12 2 1 15 15 C 1.52995 * 109.47403 * 75.87672 * 14 12 2 16 16 H 1.08996 * 109.47161 * 300.55164 * 15 14 12 17 17 O 1.42902 * 109.47044 * 60.55351 * 15 14 12 18 18 C 1.53001 * 109.46874 * 180.55222 * 15 14 12 19 19 C 1.50703 * 109.46758 * 175.00239 * 18 15 14 20 20 C 1.38239 * 119.97833 * 90.00085 * 19 18 15 21 21 C 1.38197 * 120.03206 * 180.02562 * 20 19 18 22 22 C 1.38460 * 119.96865 * 0.22334 * 21 20 19 23 23 F 1.35099 * 120.02519 * 179.72652 * 22 21 20 24 24 C 1.38459 * 119.94927 * 359.50326 * 22 21 20 25 25 C 1.38193 * 119.97444 * 0.52224 * 24 22 21 26 26 H 1.08994 * 109.46861 * 299.99548 * 1 2 3 27 27 H 1.08995 * 109.47150 * 59.99449 * 1 2 3 28 28 H 1.08997 * 109.46997 * 179.97438 * 1 2 3 29 29 H 0.96997 * 120.00089 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47273 * 189.36962 * 13 12 2 31 31 H 1.09001 * 109.47079 * 309.37543 * 13 12 2 32 32 H 1.09003 * 109.46610 * 69.37062 * 13 12 2 33 33 H 1.09005 * 109.46582 * 315.87535 * 14 12 2 34 34 H 1.09000 * 109.47172 * 195.88402 * 14 12 2 35 35 H 0.96702 * 113.99996 * 60.00185 * 17 15 14 36 36 H 1.08999 * 109.47156 * 55.00659 * 18 15 14 37 37 H 1.08998 * 109.47396 * 294.99505 * 18 15 14 38 38 H 1.08005 * 119.98640 * 359.97360 * 20 19 18 39 39 H 1.07994 * 120.01560 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.01146 * 180.25172 * 24 22 21 41 41 H 1.08001 * 119.98960 * 179.70455 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9437 0.8300 2.6035 8 14 2.3226 -1.1199 4.0077 9 1 3.1475 -2.2867 3.6035 10 1 3.1474 -0.1862 4.8160 11 1 1.1679 -1.5869 4.8164 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4091 15 6 2.7495 1.2553 -2.4922 16 1 2.6495 1.8848 -1.6081 17 8 4.0789 0.7356 -2.5591 18 6 2.4628 2.0858 -3.7448 19 6 3.3629 3.2944 -3.7628 20 6 4.6010 3.2245 -4.3737 21 6 5.4275 4.3320 -4.3904 22 6 5.0169 5.5106 -3.7909 23 9 5.8263 6.5923 -3.8018 24 6 3.7743 5.5812 -3.1843 25 6 2.9498 4.4723 -3.1684 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7091 1.1611 3.4845 30 1 1.9341 -2.5864 -2.1046 31 1 1.5626 -2.5650 -0.3639 32 1 0.3716 -1.9512 -1.5357 33 1 0.7382 0.4935 -2.3679 34 1 1.8595 -0.5377 -3.2885 35 1 4.2402 0.1650 -3.3230 36 1 1.4217 2.4083 -3.7365 37 1 2.6490 1.4810 -4.6322 38 1 4.9230 2.3037 -4.8374 39 1 6.3949 4.2770 -4.8674 40 1 3.4513 6.5012 -2.7200 41 1 1.9824 4.5256 -2.6911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292675745.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:48 Heat of formation + Delta-G solvation = -89.991663 kcal Electronic energy + Delta-G solvation = -22099.747312 eV Core-core repulsion = 18700.143377 eV Total energy + Delta-G solvation = -3399.603935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.87694 -40.40817 -39.25866 -37.37936 -34.63407 -33.51295 -32.03362 -31.00495 -30.02391 -27.47603 -27.16370 -25.12195 -23.97299 -23.26409 -22.00371 -20.77822 -18.61916 -18.29575 -17.48900 -17.35745 -16.92741 -16.58853 -16.32444 -16.06827 -15.95554 -15.48433 -15.12489 -14.87608 -14.44163 -14.39899 -14.24674 -13.86316 -13.47498 -13.13841 -13.00488 -12.72923 -12.68392 -12.59318 -12.55303 -12.40768 -12.20547 -12.06484 -11.90060 -11.83899 -11.37880 -10.94087 -10.74375 -10.45658 -10.00849 -9.42025 -8.70849 -8.09185 -6.18287 0.19632 0.33495 1.40261 1.42838 1.54159 2.44054 2.63429 3.20262 3.33187 3.35448 3.76595 3.80170 3.88687 4.00474 4.15650 4.28784 4.40878 4.43670 4.49364 4.63991 4.69003 4.70274 4.81833 4.85577 4.93391 4.98725 5.01947 5.15902 5.17968 5.20077 5.23681 5.29137 5.32791 5.56849 5.65645 5.74153 5.83957 5.99064 6.27810 6.55473 6.81810 6.96075 7.17613 7.50767 8.97044 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.004070 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.177955 B = 6878.309455 C = 7590.270996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.510 4.510 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.540 5.540 13 C 0.039 3.961 14 C 0.022 3.978 15 C 0.130 3.870 16 H 0.056 0.944 17 O -0.560 6.560 18 C -0.101 4.101 19 C -0.087 4.087 20 C -0.077 4.077 21 C -0.157 4.157 22 C 0.066 3.934 23 F -0.152 7.152 24 C -0.162 4.162 25 C -0.103 4.103 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.018 0.982 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.380 0.620 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 3.760 -17.181 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.110 3.890 3 H 0.023 0.977 4 C -0.548 4.548 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.263 5.263 13 C -0.109 4.109 14 C -0.107 4.107 15 C 0.070 3.930 16 H 0.074 0.926 17 O -0.365 6.365 18 C -0.139 4.139 19 C -0.087 4.087 20 C -0.095 4.095 21 C -0.176 4.176 22 C 0.047 3.953 23 F -0.131 7.131 24 C -0.180 4.180 25 C -0.121 4.121 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.228 0.772 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.715 4.187 -16.453 17.379 hybrid contribution -0.717 0.006 0.837 1.102 sum 2.998 4.193 -15.616 16.444 Atomic orbital electron populations 1.22204 1.00472 0.99191 0.99946 1.19013 0.89651 0.92905 0.87460 0.97731 1.21433 1.30008 1.12204 0.91188 0.92959 1.25647 0.95565 0.95870 1.01717 1.70008 1.38216 1.24238 1.23748 0.85562 0.78096 0.78683 0.79632 1.19315 1.21003 1.20535 1.62137 1.58953 1.02944 1.02246 1.22204 0.96289 0.90932 1.01462 1.22866 0.97453 0.96374 0.93973 1.21650 0.82417 0.92541 0.96436 0.92569 1.86658 1.29277 1.68706 1.51899 1.21286 0.99390 0.94208 0.99034 1.20032 0.96030 0.95025 0.97638 1.21163 0.92358 0.98301 0.97706 1.21385 1.02259 0.91916 1.01996 1.17982 0.90106 0.84495 1.02686 1.91454 1.72610 1.53891 1.95098 1.21293 0.93519 1.01109 1.02127 1.21177 1.00415 0.92139 0.98344 0.92319 0.95293 0.94956 0.93136 0.90782 0.93206 0.96398 0.94640 0.88799 0.77210 0.89192 0.87487 0.82665 0.83122 0.83974 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 8.26 71.98 0.59 -6.94 16 2 C 0.22 10.85 2.22 44.17 0.10 10.95 16 3 H 0.00 0.27 6.63 -2.39 -0.02 0.26 16 4 C -0.51 -28.41 7.83 25.60 0.20 -28.20 16 5 H 0.05 2.95 7.17 -2.91 -0.02 2.93 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -53.49 11.32 21.45 0.24 -53.24 16 8 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.54 -21.90 4.51 -901.45 -4.06 -25.97 16 13 C 0.04 1.43 8.48 127.69 1.08 2.51 16 14 C 0.02 0.67 4.54 86.30 0.39 1.06 16 15 C 0.13 3.83 3.02 30.59 0.09 3.92 16 16 H 0.06 2.19 6.78 -2.39 -0.02 2.17 16 17 O -0.56 -16.91 12.71 -148.98 -1.89 -18.80 16 18 C -0.10 -2.06 5.03 29.85 0.15 -1.91 16 19 C -0.09 -1.97 4.97 -19.86 -0.10 -2.07 16 20 C -0.08 -1.58 9.40 22.26 0.21 -1.37 16 21 C -0.16 -3.38 10.03 22.31 0.22 -3.16 16 22 C 0.07 1.65 7.30 22.38 0.16 1.81 16 23 F -0.15 -3.94 17.27 44.97 0.78 -3.16 16 24 C -0.16 -3.92 10.03 22.31 0.22 -3.69 16 25 C -0.10 -2.47 9.70 22.26 0.22 -2.26 16 26 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 27 H 0.03 1.19 6.45 -2.39 -0.02 1.18 16 28 H 0.03 1.47 6.54 -2.39 -0.02 1.46 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 2.04 6.66 -2.39 -0.02 2.03 16 32 H 0.02 0.61 6.79 -2.39 -0.02 0.60 16 33 H 0.04 1.12 6.17 -2.38 -0.01 1.11 16 34 H 0.09 2.23 7.94 -2.39 -0.02 2.21 16 35 H 0.38 7.69 9.05 -74.06 -0.67 7.02 16 36 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.11 1.52 8.08 -2.39 -0.02 1.50 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 41 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -66.56 333.85 1.45 -65.11 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.36 Total: 17.81 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 4.00 Total: -28.34 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -3.82 Total: -79.21 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -1.89 Total: -18.80 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.56 1.45 -65.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675745.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.880 kcal (2) G-P(sol) polarization free energy of solvation -66.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds