Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.47128 * 2 1 4 4 C 1.50700 * 109.47045 * 239.99608 * 2 1 3 5 5 H 1.07996 * 120.00003 * 240.00038 * 4 2 1 6 6 C 1.37880 * 119.99536 * 60.00168 * 4 2 1 7 7 N 1.31510 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99546 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47287 * 119.99993 * 8 6 4 11 11 H 1.48500 * 109.47213 * 240.00124 * 8 6 4 12 12 N 1.46899 * 109.46723 * 119.99796 * 2 1 3 13 13 C 1.46899 * 111.00101 * 58.95790 * 12 2 1 14 14 C 1.46899 * 111.00462 * 295.00131 * 12 2 1 15 15 C 1.52995 * 109.47134 * 190.00572 * 14 12 2 16 16 H 1.09006 * 109.47262 * 304.99518 * 15 14 12 17 17 O 1.42899 * 109.47499 * 64.99879 * 15 14 12 18 18 C 1.53011 * 109.47033 * 184.99855 * 15 14 12 19 19 C 1.50697 * 109.47155 * 174.99805 * 18 15 14 20 20 C 1.38244 * 119.97201 * 89.99868 * 19 18 15 21 21 C 1.38205 * 120.02298 * 179.97438 * 20 19 18 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 H 1.09007 * 109.46670 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47160 * 299.99475 * 1 2 3 28 28 H 1.08993 * 109.47065 * 60.00717 * 1 2 3 29 29 H 0.97000 * 119.99755 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47074 * 296.03974 * 13 12 2 31 31 H 1.08997 * 109.47265 * 56.04246 * 13 12 2 32 32 H 1.09004 * 109.47016 * 176.04276 * 13 12 2 33 33 H 1.08995 * 109.47355 * 70.00185 * 14 12 2 34 34 H 1.09003 * 109.46738 * 310.00189 * 14 12 2 35 35 H 0.96698 * 114.00000 * 59.99849 * 17 15 14 36 36 H 1.08994 * 109.46802 * 54.99872 * 18 15 14 37 37 H 1.09000 * 109.46596 * 294.99913 * 18 15 14 38 38 H 1.07999 * 119.98898 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 41 41 H 1.07999 * 119.98560 * 179.70313 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0761 1.2460 14 6 1.6487 0.0391 2.4181 15 6 2.3789 -0.5662 3.6186 16 1 2.1676 -1.6343 3.6716 17 8 3.7860 -0.3657 3.4709 18 6 1.8990 0.1130 4.9030 19 6 2.5255 -0.5651 6.0941 20 6 3.7380 -0.1177 6.5848 21 6 4.3132 -0.7385 7.6774 22 6 3.6771 -1.8119 8.2774 23 9 4.2411 -2.4231 9.3421 24 6 2.4599 -2.2554 7.7886 25 6 1.8868 -1.6335 6.6956 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.7088 1.1611 -3.4844 30 1 0.4420 -2.0731 1.3348 31 1 1.8168 -2.5950 0.3319 32 1 1.9618 -2.5868 2.1059 33 1 0.5723 -0.0345 2.5726 34 1 1.9297 1.0870 2.3125 35 1 4.0474 0.5637 3.4170 36 1 0.8138 0.0367 4.9706 37 1 2.1892 1.1635 4.8886 38 1 4.2359 0.7171 6.1141 39 1 5.2607 -0.3891 8.0603 40 1 1.9608 -3.0900 8.2584 41 1 0.9398 -1.9823 6.3112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292675749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -70.612402 kcal Electronic energy + Delta-G solvation = -21809.839789 eV Core-core repulsion = 18411.076202 eV Total energy + Delta-G solvation = -3398.763587 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.01985 -39.54979 -37.95292 -36.04593 -32.80302 -32.50617 -31.27984 -29.66016 -28.19442 -26.33220 -25.16046 -24.09420 -23.19734 -21.72804 -20.98918 -19.23700 -17.80624 -16.59697 -16.44747 -15.98973 -15.72953 -15.57054 -15.19814 -15.11391 -14.31271 -14.26682 -13.78189 -13.70985 -13.53896 -13.12563 -12.99999 -12.49722 -12.19931 -11.80706 -11.77166 -11.55937 -11.16389 -11.09971 -11.06329 -10.80622 -10.77364 -10.47710 -10.40580 -10.08154 -10.01203 -9.55798 -9.24995 -8.87574 -8.56986 -8.39598 -7.10189 -6.01680 -4.04838 1.00063 1.09085 3.30038 3.38028 3.42429 3.43624 4.12209 4.38256 4.48636 4.53889 4.71299 4.77005 4.92334 5.07960 5.14643 5.28630 5.30732 5.44513 5.52061 5.66752 5.73363 5.77693 5.95365 5.96609 6.08742 6.10081 6.23477 6.30433 6.39326 6.47954 6.65485 6.75154 6.80236 6.89834 7.10277 7.47006 7.70131 7.83676 7.98461 8.13447 8.38063 8.60518 9.01929 9.60390 11.05617 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039019 B = 0.003058 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.421346 B = 9153.515652 C = 9281.074031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.037 0.963 4 C -0.498 4.498 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.525 5.525 13 C 0.033 3.967 14 C 0.024 3.976 15 C 0.117 3.883 16 H 0.096 0.904 17 O -0.544 6.544 18 C -0.117 4.117 19 C -0.076 4.076 20 C -0.076 4.076 21 C -0.152 4.152 22 C 0.086 3.914 23 F -0.145 7.145 24 C -0.153 4.153 25 C -0.091 4.091 26 H 0.030 0.970 27 H 0.006 0.994 28 H 0.088 0.912 29 H 0.259 0.741 30 H 0.014 0.986 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.367 0.633 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -1.358 19.239 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.248 5.248 13 C -0.115 4.115 14 C -0.105 4.105 15 C 0.057 3.943 16 H 0.114 0.886 17 O -0.348 6.348 18 C -0.155 4.155 19 C -0.077 4.077 20 C -0.094 4.094 21 C -0.171 4.171 22 C 0.067 3.933 23 F -0.123 7.123 24 C -0.172 4.172 25 C -0.110 4.110 26 H 0.049 0.951 27 H 0.025 0.975 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.213 0.787 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.856 -1.942 19.116 19.304 hybrid contribution -0.680 0.111 -0.655 0.951 sum 1.175 -1.831 18.461 18.589 Atomic orbital electron populations 1.22411 1.01011 0.99308 1.00425 1.19321 0.89589 0.94501 0.86180 0.94474 1.21177 1.30335 1.12453 0.89660 0.91826 1.24930 0.95254 0.95151 0.99032 1.69892 1.37233 1.23169 1.23260 0.86471 0.78521 0.79717 0.82890 1.19703 1.21231 1.21061 1.62266 1.59255 1.01700 1.01556 1.22267 0.96379 0.91430 1.01467 1.22743 0.97140 0.98615 0.92037 1.21960 0.81700 1.00139 0.90471 0.88632 1.86617 1.21858 1.30341 1.95940 1.21424 1.01030 0.99940 0.93088 1.19866 0.95112 0.96219 0.96475 1.20895 0.94438 0.99570 0.94456 1.21133 1.01332 0.96553 0.98103 1.17720 0.93743 0.94727 0.87120 1.91481 1.84815 1.82183 1.53866 1.21097 0.95150 1.02098 0.98833 1.20934 1.00109 0.95154 0.94753 0.95143 0.97531 0.89374 0.93106 0.96797 0.90691 0.93888 0.94991 0.91350 0.78679 0.89951 0.90333 0.85024 0.84944 0.84974 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.28 37.16 0.31 -3.77 16 2 C 0.21 5.18 2.34 -68.86 -0.16 5.02 16 3 H 0.04 1.01 8.03 -51.93 -0.42 0.59 16 4 C -0.50 -13.53 7.88 -34.44 -0.27 -13.81 16 5 H 0.06 1.75 6.77 -52.49 -0.36 1.40 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.52 -10.95 4.69 -236.29 -1.11 -12.05 16 13 C 0.03 0.64 8.56 60.06 0.51 1.16 16 14 C 0.02 0.39 4.03 -3.83 -0.02 0.38 16 15 C 0.12 1.58 2.91 -26.73 -0.08 1.51 16 16 H 0.10 1.40 6.34 -51.93 -0.33 1.07 16 17 O -0.54 -7.94 12.78 -35.23 -0.45 -8.39 16 18 C -0.12 -1.20 5.03 -27.88 -0.14 -1.34 16 19 C -0.08 -0.81 4.97 -104.62 -0.52 -1.33 16 20 C -0.08 -0.76 9.40 -39.59 -0.37 -1.14 16 21 C -0.15 -1.56 10.03 -39.51 -0.40 -1.96 16 22 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 23 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 24 C -0.15 -1.56 10.03 -39.51 -0.40 -1.95 16 25 C -0.09 -0.92 9.70 -39.59 -0.38 -1.31 16 26 H 0.03 0.70 6.47 -51.93 -0.34 0.36 16 27 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.01 0.26 6.51 -51.93 -0.34 -0.08 16 31 H 0.07 1.60 6.41 -51.93 -0.33 1.26 16 32 H 0.04 0.74 6.37 -51.93 -0.33 0.41 16 33 H 0.03 0.52 6.94 -51.93 -0.36 0.16 16 34 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 35 H 0.37 4.19 9.05 45.56 0.41 4.60 16 36 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -29.98 333.08 -8.32 -38.30 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.13 Total: 3.55 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.29 Total: -16.40 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.48 Total: -36.73 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.45 Total: -8.39 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.98 -8.32 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.310 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds