Wall clock time and date at job start Tue Mar 31 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.47128 * 2 1 4 4 C 1.50700 * 109.47045 * 239.99608 * 2 1 3 5 5 H 1.07996 * 120.00003 * 240.00038 * 4 2 1 6 6 C 1.37880 * 119.99536 * 60.00168 * 4 2 1 7 7 N 1.31510 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99546 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47442 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47287 * 119.99993 * 8 6 4 11 11 H 1.48500 * 109.47213 * 240.00124 * 8 6 4 12 12 N 1.46899 * 109.46723 * 119.99796 * 2 1 3 13 13 C 1.46899 * 111.00101 * 58.95790 * 12 2 1 14 14 C 1.46899 * 111.00462 * 295.00131 * 12 2 1 15 15 C 1.52995 * 109.47134 * 190.00572 * 14 12 2 16 16 H 1.09006 * 109.47262 * 304.99518 * 15 14 12 17 17 O 1.42899 * 109.47499 * 64.99879 * 15 14 12 18 18 C 1.53011 * 109.47033 * 184.99855 * 15 14 12 19 19 C 1.50697 * 109.47155 * 174.99805 * 18 15 14 20 20 C 1.38244 * 119.97201 * 89.99868 * 19 18 15 21 21 C 1.38205 * 120.02298 * 179.97438 * 20 19 18 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 H 1.09007 * 109.46670 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47160 * 299.99475 * 1 2 3 28 28 H 1.08993 * 109.47065 * 60.00717 * 1 2 3 29 29 H 0.97000 * 119.99755 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47074 * 296.03974 * 13 12 2 31 31 H 1.08997 * 109.47265 * 56.04246 * 13 12 2 32 32 H 1.09004 * 109.47016 * 176.04276 * 13 12 2 33 33 H 1.08995 * 109.47355 * 70.00185 * 14 12 2 34 34 H 1.09003 * 109.46738 * 310.00189 * 14 12 2 35 35 H 0.96698 * 114.00000 * 59.99849 * 17 15 14 36 36 H 1.08994 * 109.46802 * 54.99872 * 18 15 14 37 37 H 1.09000 * 109.46596 * 294.99913 * 18 15 14 38 38 H 1.07999 * 119.98898 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 41 41 H 1.07999 * 119.98560 * 179.70313 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1197 -4.0078 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0761 1.2460 14 6 1.6487 0.0391 2.4181 15 6 2.3789 -0.5662 3.6186 16 1 2.1676 -1.6343 3.6716 17 8 3.7860 -0.3657 3.4709 18 6 1.8990 0.1130 4.9030 19 6 2.5255 -0.5651 6.0941 20 6 3.7380 -0.1177 6.5848 21 6 4.3132 -0.7385 7.6774 22 6 3.6771 -1.8119 8.2774 23 9 4.2411 -2.4231 9.3421 24 6 2.4599 -2.2554 7.7886 25 6 1.8868 -1.6335 6.6956 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.7088 1.1611 -3.4844 30 1 0.4420 -2.0731 1.3348 31 1 1.8168 -2.5950 0.3319 32 1 1.9618 -2.5868 2.1059 33 1 0.5723 -0.0345 2.5726 34 1 1.9297 1.0870 2.3125 35 1 4.0474 0.5637 3.4170 36 1 0.8138 0.0367 4.9706 37 1 2.1892 1.1635 4.8886 38 1 4.2359 0.7171 6.1141 39 1 5.2607 -0.3891 8.0603 40 1 1.9608 -3.0900 8.2584 41 1 0.9398 -1.9823 6.3112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292675749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:51 Heat of formation + Delta-G solvation = -89.948519 kcal Electronic energy + Delta-G solvation = -21810.678266 eV Core-core repulsion = 18411.076202 eV Total energy + Delta-G solvation = -3399.602064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.86621 -40.41824 -39.27045 -37.43125 -34.65059 -33.50901 -32.02305 -31.17705 -29.64732 -27.68907 -27.10945 -25.47011 -23.95026 -22.91634 -21.96442 -20.95531 -18.60355 -18.24878 -17.45076 -17.28956 -17.03328 -16.58858 -16.48161 -16.10243 -15.99354 -15.37477 -14.91257 -14.83629 -14.54494 -14.39764 -14.25408 -14.13354 -13.43821 -13.07950 -12.94904 -12.89152 -12.70412 -12.57905 -12.50857 -12.40941 -12.14749 -11.99510 -11.93872 -11.83255 -11.49034 -10.96932 -10.70878 -10.48493 -9.99887 -9.41474 -8.73785 -8.10070 -6.19886 0.20289 0.34517 1.41128 1.43732 1.55164 2.43770 2.64506 3.19412 3.32203 3.34987 3.75022 3.79072 3.86788 4.01537 4.15140 4.28042 4.38248 4.41763 4.43956 4.62571 4.68392 4.71490 4.83222 4.88589 4.91576 4.95546 5.03469 5.16094 5.17905 5.19379 5.21463 5.29389 5.33712 5.57306 5.66047 5.73724 5.82528 5.99612 6.22841 6.51647 6.80058 6.94694 7.06669 7.49556 8.96113 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039019 B = 0.003058 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.421346 B = 9153.515652 C = 9281.074031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.538 5.538 13 C 0.039 3.961 14 C 0.024 3.976 15 C 0.129 3.871 16 H 0.087 0.913 17 O -0.562 6.562 18 C -0.105 4.105 19 C -0.086 4.086 20 C -0.081 4.081 21 C -0.159 4.159 22 C 0.066 3.934 23 F -0.153 7.153 24 C -0.158 4.158 25 C -0.097 4.097 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.260 0.740 30 H 0.018 0.982 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.380 0.620 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -1.622 20.093 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.024 0.976 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.261 5.261 13 C -0.109 4.109 14 C -0.104 4.104 15 C 0.069 3.931 16 H 0.105 0.895 17 O -0.368 6.368 18 C -0.143 4.143 19 C -0.086 4.086 20 C -0.099 4.099 21 C -0.178 4.178 22 C 0.047 3.953 23 F -0.131 7.131 24 C -0.177 4.177 25 C -0.114 4.114 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.782 -2.203 19.989 20.189 hybrid contribution -0.634 0.207 -0.865 1.092 sum 1.148 -1.996 19.124 19.263 Atomic orbital electron populations 1.22201 1.00359 0.99090 1.00097 1.19057 0.89923 0.92889 0.87325 0.97553 1.21444 1.30302 1.12326 0.91139 0.92833 1.25650 0.95477 0.95835 1.01720 1.70007 1.38009 1.24200 1.23862 0.85538 0.78062 0.78667 0.79542 1.19457 1.20685 1.20722 1.62140 1.59703 1.02369 1.01935 1.22202 0.96733 0.90673 1.01303 1.22855 0.97940 0.98389 0.91249 1.21797 0.81007 0.99667 0.90580 0.89548 1.86580 1.22392 1.31800 1.96028 1.21292 1.01679 1.00344 0.90998 1.19974 0.95403 0.96532 0.96674 1.21137 0.94434 0.99964 0.94347 1.21355 1.01931 0.96339 0.98157 1.18006 0.94462 0.95402 0.87392 1.91458 1.85004 1.82395 1.54282 1.21325 0.94938 1.02519 0.98923 1.21189 1.00767 0.94919 0.94569 0.95137 0.95233 0.92213 0.93035 0.96348 0.93105 0.91430 0.94391 0.91385 0.77174 0.88696 0.88818 0.83475 0.83625 0.83527 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.44 8.28 71.99 0.60 -6.84 16 2 C 0.22 10.67 2.34 44.17 0.10 10.77 16 3 H 0.01 0.36 8.03 -2.39 -0.02 0.34 16 4 C -0.51 -28.20 7.88 25.60 0.20 -28.00 16 5 H 0.05 2.99 6.77 -2.91 -0.02 2.97 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -52.49 11.32 21.45 0.24 -52.25 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 N -0.54 -22.07 4.69 -901.48 -4.23 -26.29 16 13 C 0.04 1.49 8.56 127.69 1.09 2.58 16 14 C 0.02 0.76 4.03 86.30 0.35 1.11 16 15 C 0.13 3.20 2.91 30.60 0.09 3.29 16 16 H 0.09 2.32 6.34 -2.38 -0.02 2.30 16 17 O -0.56 -15.32 12.78 -148.98 -1.90 -17.22 16 18 C -0.11 -1.85 5.03 29.85 0.15 -1.70 16 19 C -0.09 -1.59 4.97 -19.86 -0.10 -1.69 16 20 C -0.08 -1.46 9.40 22.26 0.21 -1.25 16 21 C -0.16 -3.02 10.03 22.31 0.22 -2.80 16 22 C 0.07 1.40 7.30 22.38 0.16 1.56 16 23 F -0.15 -3.46 17.27 44.97 0.78 -2.68 16 24 C -0.16 -2.97 10.03 22.31 0.22 -2.74 16 25 C -0.10 -1.73 9.70 22.26 0.22 -1.51 16 26 H 0.03 1.39 6.47 -2.38 -0.02 1.37 16 27 H 0.03 1.20 6.75 -2.39 -0.02 1.19 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 29 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.02 0.67 6.51 -2.39 -0.02 0.65 16 31 H 0.05 2.15 6.41 -2.39 -0.02 2.14 16 32 H 0.07 2.21 6.37 -2.38 -0.02 2.20 16 33 H 0.04 1.15 6.94 -2.39 -0.02 1.13 16 34 H 0.07 2.12 8.00 -2.39 -0.02 2.10 16 35 H 0.38 7.94 9.05 -74.06 -0.67 7.27 16 36 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 37 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -63.83 333.08 1.25 -62.58 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.37 Total: 16.17 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 3.97 Total: -26.16 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -3.99 Total: -78.54 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -1.90 Total: -17.22 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -63.83 1.25 -62.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.369 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds