Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50696 * 109.47563 * 120.00103 * 2 1 3 5 5 H 1.08004 * 120.00361 * 119.99694 * 4 2 1 6 6 C 1.37882 * 120.00036 * 300.00427 * 4 2 1 7 7 N 1.31514 * 120.00387 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99777 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47009 * 90.00357 * 8 6 4 10 10 H 1.48506 * 109.47225 * 210.00362 * 8 6 4 11 11 H 1.48496 * 109.47430 * 330.00648 * 8 6 4 12 12 N 1.46901 * 109.47138 * 240.00047 * 2 1 3 13 13 C 1.46906 * 110.99977 * 306.04601 * 12 2 1 14 14 C 1.46901 * 110.99969 * 69.99575 * 12 2 1 15 15 C 1.53001 * 109.47192 * 170.00167 * 14 12 2 16 16 H 1.08993 * 109.47242 * 60.00126 * 15 14 12 17 17 O 1.42900 * 109.47071 * 299.99998 * 15 14 12 18 18 C 1.53000 * 109.47149 * 180.02562 * 15 14 12 19 19 C 1.50696 * 109.46963 * 184.99810 * 18 15 14 20 20 C 1.38248 * 119.97128 * 89.99994 * 19 18 15 21 21 C 1.38196 * 120.02484 * 179.97438 * 20 19 18 22 22 C 1.38458 * 119.97492 * 359.97438 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38196 * 119.97501 * 359.51590 * 24 22 21 26 26 H 1.08993 * 109.47692 * 59.99914 * 1 2 3 27 27 H 1.09005 * 109.47056 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46865 * 299.99865 * 1 2 3 29 29 H 0.96991 * 120.00341 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46802 * 183.94937 * 13 12 2 31 31 H 1.09004 * 109.46479 * 303.95209 * 13 12 2 32 32 H 1.09000 * 109.46851 * 63.95092 * 13 12 2 33 33 H 1.09001 * 109.46773 * 50.00413 * 14 12 2 34 34 H 1.09000 * 109.47160 * 290.00495 * 14 12 2 35 35 H 0.96701 * 114.00243 * 300.00038 * 17 15 14 36 36 H 1.09002 * 109.47296 * 64.99899 * 18 15 14 37 37 H 1.09001 * 109.47017 * 305.00404 * 18 15 14 38 38 H 1.08001 * 119.98900 * 359.97438 * 20 19 18 39 39 H 1.07996 * 120.01603 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.01049 * 179.72700 * 24 22 21 41 41 H 1.07993 * 119.98770 * 180.23077 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9771 1.9953 3.9071 11 1 0.8488 2.1772 1.4923 12 7 2.0196 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 6 2.4883 -0.5256 -3.5973 16 1 2.1388 -1.5473 -3.7460 17 8 3.8931 -0.5361 -3.3356 18 6 2.2109 0.2972 -4.8571 19 6 2.8334 -0.3834 -6.0488 20 6 2.1061 -1.3095 -6.7731 21 6 2.6757 -1.9339 -7.8665 22 6 3.9751 -1.6313 -8.2367 23 9 4.5332 -2.2415 -9.3052 24 6 4.7041 -0.7070 -7.5077 25 6 4.1308 -0.0803 -6.4176 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9041 -0.5275 4.4375 30 1 1.8663 -2.5520 -2.1649 31 1 1.6466 -2.5987 -0.3991 32 1 0.3555 -1.9520 -1.4399 33 1 2.1024 1.1189 -2.2604 34 1 0.6812 0.1053 -2.6087 35 1 4.2732 0.3415 -3.1930 36 1 2.6394 1.2929 -4.7424 37 1 1.1344 0.3801 -5.0071 38 1 1.0924 -1.5450 -6.4844 39 1 2.1076 -2.6576 -8.4320 40 1 5.7193 -0.4735 -7.7930 41 1 4.6979 0.6434 -5.8511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292675753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = -61.687213 kcal Electronic energy + Delta-G solvation = -21871.061073 eV Core-core repulsion = 18472.684511 eV Total energy + Delta-G solvation = -3398.376562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.04529 -39.60252 -38.11136 -36.21292 -32.78912 -32.49856 -31.31540 -30.27567 -28.64836 -26.37643 -25.28584 -24.20304 -23.23389 -21.75234 -21.01611 -19.30694 -17.83933 -16.75410 -16.63861 -16.21965 -15.76928 -15.61640 -15.43743 -15.20220 -14.39745 -14.24462 -13.86092 -13.82362 -13.66476 -13.35295 -13.05944 -12.66016 -12.28086 -12.21210 -11.89749 -11.86820 -11.49737 -11.28534 -11.18268 -11.11349 -10.89142 -10.69064 -10.30366 -10.05226 -9.78039 -9.50328 -9.28447 -9.06200 -8.62152 -8.58667 -7.30827 -6.06416 -4.04229 0.96322 1.05692 3.23493 3.32858 3.36435 3.38910 4.09116 4.35417 4.38284 4.49399 4.66003 4.71618 4.80075 5.02266 5.09880 5.17402 5.24737 5.34164 5.41221 5.56538 5.64999 5.72123 5.89550 5.92649 5.93287 6.05176 6.08894 6.14516 6.20006 6.25378 6.29114 6.41382 6.52220 6.68850 6.71645 6.87341 7.16616 7.62499 7.90848 7.94646 8.09994 8.66680 9.03098 9.55571 11.06916 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041565 B = 0.003161 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.484010 B = 8855.818043 C = 8924.590262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.037 0.963 4 C -0.500 4.500 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.512 5.512 13 C 0.031 3.969 14 C 0.019 3.981 15 C 0.118 3.882 16 H 0.096 0.904 17 O -0.541 6.541 18 C -0.116 4.116 19 C -0.077 4.077 20 C -0.091 4.091 21 C -0.153 4.153 22 C 0.087 3.913 23 F -0.144 7.144 24 C -0.152 4.152 25 C -0.075 4.075 26 H 0.026 0.974 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.368 0.632 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 2.654 -21.994 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.073 3.927 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.234 5.234 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.058 3.942 16 H 0.114 0.886 17 O -0.345 6.345 18 C -0.154 4.154 19 C -0.078 4.078 20 C -0.110 4.110 21 C -0.172 4.172 22 C 0.068 3.932 23 F -0.123 7.123 24 C -0.171 4.171 25 C -0.093 4.093 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.215 0.785 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.057 1.925 -21.845 21.930 hybrid contribution -1.515 1.385 0.037 2.053 sum -1.458 3.310 -21.809 22.106 Atomic orbital electron populations 1.22837 1.01868 1.01056 0.98763 1.19795 0.88542 0.95143 0.89192 0.94543 1.20949 1.31327 1.13783 0.87733 0.89950 1.24927 0.95943 0.96567 0.95855 1.69877 1.45786 1.40348 0.97854 0.86890 0.80529 0.83978 0.76865 1.20862 1.22437 1.19482 1.62085 1.58351 1.02128 1.00857 1.22322 0.95522 0.91682 1.02157 1.22829 0.97683 0.98180 0.92319 1.21904 0.82476 0.99537 0.90239 0.88640 1.86628 1.20779 1.33614 1.93448 1.21413 1.01435 0.99380 0.93221 1.19840 0.94410 0.97188 0.96336 1.20925 1.00175 0.95649 0.94207 1.21097 0.94165 1.02471 0.99443 1.17725 0.92752 0.95997 0.86758 1.91485 1.85449 1.81753 1.53618 1.21141 1.00790 0.98051 0.97094 1.20894 0.94341 0.98981 0.95102 0.95496 0.92436 0.93746 0.92655 0.93339 0.90186 0.96740 0.91221 0.94990 0.78547 0.90311 0.89987 0.85132 0.84957 0.84903 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.96 7.92 37.16 0.29 -3.66 16 2 C 0.18 4.17 1.90 -68.87 -0.13 4.03 16 3 H 0.04 0.87 6.99 -51.93 -0.36 0.51 16 4 C -0.50 -13.85 8.49 -34.44 -0.29 -14.14 16 5 H 0.08 2.52 7.37 -52.48 -0.39 2.14 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 8 Si 0.89 21.67 24.37 -169.99 -4.14 17.53 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 12 N -0.51 -10.15 4.57 -236.28 -1.08 -11.23 16 13 C 0.03 0.59 8.45 60.07 0.51 1.10 16 14 C 0.02 0.29 4.19 -3.82 -0.02 0.27 16 15 C 0.12 1.50 2.83 -26.73 -0.08 1.42 16 16 H 0.10 1.30 6.55 -51.93 -0.34 0.96 16 17 O -0.54 -7.62 12.70 -35.23 -0.45 -8.07 16 18 C -0.12 -1.10 5.03 -27.88 -0.14 -1.24 16 19 C -0.08 -0.77 4.97 -104.62 -0.52 -1.29 16 20 C -0.09 -0.87 9.70 -39.59 -0.38 -1.26 16 21 C -0.15 -1.50 10.03 -39.52 -0.40 -1.90 16 22 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 23 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 24 C -0.15 -1.51 10.03 -39.51 -0.40 -1.91 16 25 C -0.08 -0.73 9.40 -39.59 -0.37 -1.10 16 26 H 0.03 0.49 6.91 -51.93 -0.36 0.13 16 27 H 0.06 1.20 6.42 -51.93 -0.33 0.87 16 28 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 31 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 32 H 0.01 0.25 6.46 -51.93 -0.34 -0.08 16 33 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.03 0.47 7.06 -51.93 -0.37 0.10 16 35 H 0.37 4.06 9.05 45.56 0.41 4.47 16 36 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -31.52 326.99 -7.29 -38.80 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.05 Total: 3.42 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.31 Total: -17.17 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.31 Total: -37.83 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.45 Total: -8.07 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.52 -7.29 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.883 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds