Wall clock time and date at job start Tue Mar 31 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50696 * 109.47563 * 120.00103 * 2 1 3 5 5 H 1.08004 * 120.00361 * 119.99694 * 4 2 1 6 6 C 1.37882 * 120.00036 * 300.00427 * 4 2 1 7 7 N 1.31514 * 120.00387 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99777 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47009 * 90.00357 * 8 6 4 10 10 H 1.48506 * 109.47225 * 210.00362 * 8 6 4 11 11 H 1.48496 * 109.47430 * 330.00648 * 8 6 4 12 12 N 1.46901 * 109.47138 * 240.00047 * 2 1 3 13 13 C 1.46906 * 110.99977 * 306.04601 * 12 2 1 14 14 C 1.46901 * 110.99969 * 69.99575 * 12 2 1 15 15 C 1.53001 * 109.47192 * 170.00167 * 14 12 2 16 16 H 1.08993 * 109.47242 * 60.00126 * 15 14 12 17 17 O 1.42900 * 109.47071 * 299.99998 * 15 14 12 18 18 C 1.53000 * 109.47149 * 180.02562 * 15 14 12 19 19 C 1.50696 * 109.46963 * 184.99810 * 18 15 14 20 20 C 1.38248 * 119.97128 * 89.99994 * 19 18 15 21 21 C 1.38196 * 120.02484 * 179.97438 * 20 19 18 22 22 C 1.38458 * 119.97492 * 359.97438 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38196 * 119.97501 * 359.51590 * 24 22 21 26 26 H 1.08993 * 109.47692 * 59.99914 * 1 2 3 27 27 H 1.09005 * 109.47056 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46865 * 299.99865 * 1 2 3 29 29 H 0.96991 * 120.00341 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46802 * 183.94937 * 13 12 2 31 31 H 1.09004 * 109.46479 * 303.95209 * 13 12 2 32 32 H 1.09000 * 109.46851 * 63.95092 * 13 12 2 33 33 H 1.09001 * 109.46773 * 50.00413 * 14 12 2 34 34 H 1.09000 * 109.47160 * 290.00495 * 14 12 2 35 35 H 0.96701 * 114.00243 * 300.00038 * 17 15 14 36 36 H 1.09002 * 109.47296 * 64.99899 * 18 15 14 37 37 H 1.09001 * 109.47017 * 305.00404 * 18 15 14 38 38 H 1.08001 * 119.98900 * 359.97438 * 20 19 18 39 39 H 1.07996 * 120.01603 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.01049 * 179.72700 * 24 22 21 41 41 H 1.07993 * 119.98770 * 180.23077 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9771 1.9953 3.9071 11 1 0.8488 2.1772 1.4923 12 7 2.0196 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 6 2.4883 -0.5256 -3.5973 16 1 2.1388 -1.5473 -3.7460 17 8 3.8931 -0.5361 -3.3356 18 6 2.2109 0.2972 -4.8571 19 6 2.8334 -0.3834 -6.0488 20 6 2.1061 -1.3095 -6.7731 21 6 2.6757 -1.9339 -7.8665 22 6 3.9751 -1.6313 -8.2367 23 9 4.5332 -2.2415 -9.3052 24 6 4.7041 -0.7070 -7.5077 25 6 4.1308 -0.0803 -6.4176 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9041 -0.5275 4.4375 30 1 1.8663 -2.5520 -2.1649 31 1 1.6466 -2.5987 -0.3991 32 1 0.3555 -1.9520 -1.4399 33 1 2.1024 1.1189 -2.2604 34 1 0.6812 0.1053 -2.6087 35 1 4.2732 0.3415 -3.1930 36 1 2.6394 1.2929 -4.7424 37 1 1.1344 0.3801 -5.0071 38 1 1.0924 -1.5450 -6.4844 39 1 2.1076 -2.6576 -8.4320 40 1 5.7193 -0.4735 -7.7930 41 1 4.6979 0.6434 -5.8511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292675753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:55 Heat of formation + Delta-G solvation = -84.344902 kcal Electronic energy + Delta-G solvation = -21872.043584 eV Core-core repulsion = 18472.684511 eV Total energy + Delta-G solvation = -3399.359073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.86754 -40.42549 -39.36194 -37.48586 -34.62404 -33.51930 -32.02770 -31.87340 -29.83452 -27.59755 -27.19088 -25.53387 -23.94954 -22.85378 -21.93529 -20.96373 -18.69261 -18.59446 -17.44634 -17.36099 -17.14234 -16.62245 -16.54816 -16.04720 -16.03762 -15.39380 -15.14842 -14.82234 -14.59222 -14.43258 -14.36276 -14.17105 -14.00442 -13.29884 -13.09732 -12.99427 -12.83533 -12.60937 -12.51602 -12.34949 -12.14561 -11.93010 -11.83329 -11.51123 -11.42651 -11.11258 -10.76497 -10.72080 -9.99730 -9.41145 -8.81090 -8.25070 -6.27633 0.20489 0.34725 1.31069 1.36573 1.47111 2.33900 2.64212 3.09100 3.22581 3.34970 3.74382 3.78966 3.88053 4.01266 4.14513 4.27910 4.34673 4.41710 4.42130 4.45894 4.57067 4.61453 4.65278 4.70582 4.85114 4.88911 4.94019 5.03724 5.04099 5.16935 5.21645 5.22004 5.29652 5.34011 5.46823 5.65884 5.66888 5.99811 6.09294 6.46227 6.76902 6.80259 7.09104 7.37099 8.92393 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041565 B = 0.003161 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.484010 B = 8855.818043 C = 8924.590262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.185 3.815 3 H 0.035 0.965 4 C -0.501 4.501 5 H 0.033 0.967 6 C 0.007 3.993 7 N -0.953 5.953 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.301 1.301 11 H -0.244 1.244 12 N -0.533 5.533 13 C 0.039 3.961 14 C 0.019 3.981 15 C 0.126 3.874 16 H 0.085 0.915 17 O -0.563 6.563 18 C -0.104 4.104 19 C -0.086 4.086 20 C -0.096 4.096 21 C -0.159 4.159 22 C 0.065 3.935 23 F -0.153 7.153 24 C -0.161 4.161 25 C -0.081 4.081 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.380 0.620 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 4.654 -23.913 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.076 3.924 3 H 0.053 0.947 4 C -0.540 4.540 5 H 0.051 0.949 6 C -0.189 4.189 7 N -0.595 5.595 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.229 1.229 11 H -0.168 1.168 12 N -0.256 5.256 13 C -0.109 4.109 14 C -0.109 4.109 15 C 0.067 3.933 16 H 0.103 0.897 17 O -0.369 6.369 18 C -0.142 4.142 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.178 4.178 22 C 0.046 3.954 23 F -0.132 7.132 24 C -0.179 4.179 25 C -0.099 4.099 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.568 3.931 -23.807 24.180 hybrid contribution -0.910 0.662 0.580 1.266 sum -2.478 4.593 -23.226 23.805 Atomic orbital electron populations 1.22701 0.99960 1.01275 1.00047 1.19570 0.89865 0.94337 0.88589 0.94677 1.21234 1.30112 1.12375 0.90266 0.94872 1.25826 0.97622 1.00123 0.95342 1.70052 1.48105 1.42736 0.98560 0.85796 0.78792 0.79992 0.77353 1.19616 1.22918 1.16785 1.61936 1.59056 1.02761 1.01797 1.22200 0.96556 0.91203 1.00957 1.22960 0.99093 0.98025 0.90838 1.21812 0.81484 0.99397 0.90636 0.89725 1.86598 1.21674 1.35040 1.93631 1.21294 1.02619 0.99320 0.90973 1.19999 0.94581 0.97390 0.96622 1.21205 1.01079 0.95242 0.93862 1.21333 0.93962 1.02746 0.99760 1.18024 0.93538 0.96773 0.87055 1.91458 1.85656 1.82012 1.54095 1.21359 1.01452 0.97917 0.97203 1.21145 0.94584 0.99179 0.95026 0.91733 0.92878 0.94720 0.92680 0.91369 0.94150 0.95227 0.90330 0.93379 0.77134 0.88673 0.88283 0.83238 0.83588 0.83787 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.12 7.92 71.98 0.57 -6.55 16 2 C 0.18 8.23 1.90 44.17 0.08 8.31 16 3 H 0.04 1.59 6.99 -2.39 -0.02 1.57 16 4 C -0.50 -28.43 8.49 25.60 0.22 -28.21 16 5 H 0.03 2.15 7.37 -2.91 -0.02 2.12 16 6 C 0.01 0.42 5.45 84.66 0.46 0.88 16 7 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 8 Si 0.95 44.15 24.37 68.60 1.67 45.82 16 9 H -0.27 -11.92 6.87 99.48 0.68 -11.24 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.24 -10.21 6.53 99.48 0.65 -9.56 16 12 N -0.53 -20.33 4.57 -901.45 -4.12 -24.45 16 13 C 0.04 1.43 8.45 127.69 1.08 2.51 16 14 C 0.02 0.51 4.19 86.30 0.36 0.87 16 15 C 0.13 2.81 2.83 30.59 0.09 2.90 16 16 H 0.08 2.07 6.55 -2.39 -0.02 2.06 16 17 O -0.56 -14.71 12.70 -148.98 -1.89 -16.60 16 18 C -0.10 -1.56 5.03 29.85 0.15 -1.41 16 19 C -0.09 -1.46 4.97 -19.86 -0.10 -1.56 16 20 C -0.10 -1.59 9.70 22.26 0.22 -1.37 16 21 C -0.16 -2.87 10.03 22.31 0.22 -2.64 16 22 C 0.07 1.34 7.30 22.38 0.16 1.51 16 23 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 24 C -0.16 -2.99 10.03 22.31 0.22 -2.76 16 25 C -0.08 -1.40 9.40 22.26 0.21 -1.19 16 26 H 0.06 2.05 6.91 -2.39 -0.02 2.03 16 27 H 0.05 2.11 6.42 -2.38 -0.02 2.09 16 28 H 0.03 1.43 3.27 -2.39 -0.01 1.42 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.07 2.20 6.47 -2.39 -0.02 2.18 16 31 H 0.04 1.77 6.76 -2.38 -0.02 1.75 16 32 H 0.03 0.98 6.46 -2.39 -0.02 0.96 16 33 H 0.08 1.98 7.93 -2.39 -0.02 1.96 16 34 H 0.05 1.16 7.06 -2.39 -0.02 1.15 16 35 H 0.38 7.52 9.05 -74.06 -0.67 6.85 16 36 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 37 H 0.10 1.19 8.09 -2.39 -0.02 1.17 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.16 326.99 0.98 -69.19 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.29 Total: 17.12 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.95 Total: -28.72 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.82 Total: -84.14 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.89 Total: -16.60 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.67 Total: 45.82 kcal Total: -70.16 0.98 -69.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292675753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.158 kcal (2) G-P(sol) polarization free energy of solvation -70.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds