Wall clock time and date at job start Tue Mar 31 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.46739 * 2 1 4 4 C 1.46905 * 110.99700 * 68.70056 * 3 2 1 5 5 C 1.50707 * 109.46867 * 71.35641 * 4 3 2 6 6 H 1.07991 * 120.00060 * 5.07352 * 5 4 3 7 7 C 1.37876 * 119.99604 * 185.07981 * 5 4 3 8 8 N 1.31512 * 119.99928 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00298 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47096 * 90.00018 * 9 7 5 11 11 H 1.48505 * 109.47284 * 210.00253 * 9 7 5 12 12 H 1.48497 * 109.47235 * 330.00443 * 9 7 5 13 13 C 1.46898 * 111.00278 * 304.75034 * 3 2 1 14 14 C 1.53003 * 109.47002 * 287.05258 * 13 3 2 15 15 H 1.08994 * 109.47053 * 304.07588 * 14 13 3 16 16 O 1.42899 * 109.46852 * 64.07196 * 14 13 3 17 17 C 1.52995 * 109.47021 * 184.07099 * 14 13 3 18 18 C 1.50703 * 109.46710 * 175.00306 * 17 14 13 19 19 C 1.38244 * 119.97748 * 90.00271 * 18 17 14 20 20 C 1.38198 * 120.02412 * 179.97438 * 19 18 17 21 21 C 1.38457 * 119.97632 * 0.22488 * 20 19 18 22 22 F 1.35099 * 120.02607 * 179.72710 * 21 20 19 23 23 C 1.38460 * 119.94896 * 359.50241 * 21 20 19 24 24 C 1.38199 * 119.97341 * 0.51653 * 23 21 20 25 25 H 1.08997 * 109.47796 * 65.18648 * 1 2 3 26 26 H 1.09000 * 109.46799 * 185.18615 * 1 2 3 27 27 H 1.08999 * 109.47326 * 305.17964 * 1 2 3 28 28 H 1.09001 * 109.47355 * 240.00951 * 2 1 3 29 29 H 1.09000 * 109.47519 * 120.00203 * 2 1 3 30 30 H 1.09004 * 109.46954 * 191.35114 * 4 3 2 31 31 H 1.08999 * 109.47364 * 311.35386 * 4 3 2 32 32 H 0.96996 * 120.00618 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47300 * 167.05371 * 13 3 2 34 34 H 1.09001 * 109.47361 * 47.05532 * 13 3 2 35 35 H 0.96694 * 114.00568 * 59.99978 * 16 14 13 36 36 H 1.09002 * 109.47410 * 55.00288 * 17 14 13 37 37 H 1.08998 * 109.47422 * 294.99586 * 17 14 13 38 38 H 1.07998 * 119.98161 * 359.97164 * 19 18 17 39 39 H 1.07998 * 120.00821 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.01219 * 180.25236 * 23 21 20 41 41 H 1.07996 * 119.98560 * 179.70604 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7253 2.0474 1.2778 5 6 2.6102 1.4757 2.3554 6 1 3.3758 0.7578 2.1010 7 6 2.4422 1.8691 3.6661 8 7 3.2141 1.3699 4.6066 9 14 1.1183 3.1112 4.1062 10 1 -0.1458 2.3975 4.4188 11 1 1.5498 3.8959 5.2909 12 1 0.8984 4.0278 2.9587 13 6 1.4580 2.1420 -1.1268 14 6 2.1183 1.6836 -2.4287 15 1 3.1997 1.7916 -2.3452 16 8 1.7938 0.3131 -2.6704 17 6 1.6081 2.5408 -3.5886 18 6 2.3478 2.1722 -4.8488 19 6 1.8562 1.1765 -5.6722 20 6 2.5335 0.8380 -6.8283 21 6 3.7073 1.4935 -7.1595 22 9 4.3731 1.1597 -8.2866 23 6 4.1957 2.4945 -6.3370 24 6 3.5170 2.8310 -5.1812 25 1 -0.3634 0.4312 -0.9327 26 1 -0.3633 -1.0235 0.0929 27 1 -0.3634 0.5921 0.8399 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.9120 3.1172 1.1840 31 1 0.6803 1.8826 1.5404 32 1 3.0963 1.6469 5.5287 33 1 1.6453 3.2056 -0.9793 34 1 0.3837 1.9666 -1.1829 35 1 0.8459 0.1425 -2.7558 36 1 1.7761 3.5940 -3.3635 37 1 0.5416 2.3649 -3.7288 38 1 0.9426 0.6629 -5.4117 39 1 2.1495 0.0598 -7.4711 40 1 5.1090 3.0093 -6.5965 41 1 3.9003 3.6085 -4.5371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292890471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:24 Heat of formation + Delta-G solvation = -68.970835 kcal Electronic energy + Delta-G solvation = -21869.281604 eV Core-core repulsion = 18470.589200 eV Total energy + Delta-G solvation = -3398.692404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.03384 -39.63668 -38.27770 -35.87702 -32.81065 -32.49026 -31.30055 -30.16297 -29.24090 -27.15410 -24.90395 -23.24498 -23.03544 -21.88133 -21.08223 -19.33994 -17.82424 -16.81265 -16.66363 -16.25651 -15.86819 -15.73488 -15.36342 -15.08831 -14.40478 -14.29770 -14.07147 -13.72628 -13.70512 -13.44404 -13.07632 -12.54523 -12.35182 -12.02847 -11.88674 -11.80858 -11.61840 -11.27139 -11.13454 -10.98730 -10.88426 -10.74661 -10.61549 -10.23680 -9.84630 -9.39648 -9.27766 -9.21583 -8.59755 -8.56321 -7.27690 -6.04057 -4.00432 0.97835 1.07178 3.26018 3.34235 3.35224 3.40397 4.10593 4.36523 4.41507 4.50004 4.64504 4.68752 4.77917 5.02538 5.10455 5.25966 5.29540 5.31483 5.44520 5.52423 5.65437 5.73420 5.74961 5.88779 5.92322 5.94818 5.98025 6.06680 6.07544 6.25382 6.38677 6.45821 6.52433 6.73003 6.89104 6.96969 7.10711 7.64691 7.77490 7.94860 8.11322 8.69098 9.07529 9.58226 11.09449 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032273 B = 0.003272 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.388910 B = 8555.328761 C = 8770.229894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.045 3.955 3 N -0.518 5.518 4 C 0.158 3.842 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.015 3.985 14 C 0.120 3.880 15 H 0.106 0.894 16 O -0.547 6.547 17 C -0.115 4.115 18 C -0.077 4.077 19 C -0.077 4.077 20 C -0.153 4.153 21 C 0.087 3.913 22 F -0.145 7.145 23 C -0.152 4.152 24 C -0.089 4.089 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.022 0.978 31 H -0.011 1.011 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.363 0.637 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 2.009 -21.805 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.083 4.083 3 N -0.241 5.241 4 C 0.032 3.968 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.135 4.135 8 N -0.540 5.540 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.114 4.114 14 C 0.061 3.939 15 H 0.124 0.876 16 O -0.352 6.352 17 C -0.153 4.153 18 C -0.078 4.078 19 C -0.095 4.095 20 C -0.172 4.172 21 C 0.068 3.932 22 F -0.123 7.123 23 C -0.171 4.171 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.006 0.994 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.210 0.790 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.955 1.939 -21.658 22.101 hybrid contribution -2.074 0.807 0.339 2.252 sum -6.029 2.747 -21.319 22.324 Atomic orbital electron populations 1.22403 1.00235 1.01266 1.00619 1.22359 0.91212 0.91048 1.03684 1.62115 1.57477 1.01877 1.02582 1.20254 0.94793 0.94427 0.87350 1.21042 1.17541 1.25793 0.89873 0.90139 1.24911 0.95978 0.96155 0.96408 1.69892 1.39222 1.44031 1.00899 0.86880 0.82507 0.82178 0.78225 1.20446 1.21199 1.19390 1.22867 0.96776 0.98944 0.92843 1.21992 1.01010 0.80566 0.90359 0.87579 1.86649 1.28404 1.25954 1.94181 1.21390 0.99616 1.01563 0.92741 1.19837 0.95656 0.96157 0.96117 1.20856 0.99778 0.96035 0.92808 1.21114 0.95172 1.01686 0.99230 1.17723 0.92902 0.97919 0.84668 1.91483 1.79972 1.91739 1.49126 1.21118 1.01728 0.98446 0.95816 1.20961 0.94343 0.99636 0.95751 0.93911 0.93019 0.92641 0.89321 0.90239 0.96044 0.99353 0.92724 0.90923 0.94774 0.79025 0.89696 0.90660 0.85227 0.85002 0.84902 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 9.15 37.15 0.34 -2.60 16 2 C 0.04 0.83 5.48 -3.82 -0.02 0.81 16 3 N -0.52 -10.32 4.61 -236.06 -1.09 -11.41 16 4 C 0.16 3.73 3.69 -4.97 -0.02 3.72 16 5 C -0.50 -14.26 8.94 -34.44 -0.31 -14.57 16 6 H 0.08 2.51 7.93 -52.49 -0.42 2.10 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 9 Si 0.87 21.39 27.37 -169.99 -4.65 16.73 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.30 6.69 56.52 0.38 -5.92 16 13 C 0.01 0.22 4.58 -3.82 -0.02 0.21 16 14 C 0.12 1.50 3.18 -26.73 -0.08 1.41 16 15 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 16 O -0.55 -6.86 9.75 -35.23 -0.34 -7.21 16 17 C -0.12 -1.08 5.03 -27.88 -0.14 -1.22 16 18 C -0.08 -0.77 4.97 -104.61 -0.52 -1.29 16 19 C -0.08 -0.73 9.40 -39.59 -0.37 -1.10 16 20 C -0.15 -1.51 10.03 -39.52 -0.40 -1.90 16 21 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 22 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 23 C -0.15 -1.53 10.03 -39.51 -0.40 -1.92 16 24 C -0.09 -0.87 9.70 -39.59 -0.38 -1.26 16 25 H 0.04 0.56 5.65 -51.93 -0.29 0.26 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 1.00 6.26 -51.93 -0.33 0.67 16 28 H 0.09 1.52 5.53 -51.93 -0.29 1.23 16 29 H 0.08 1.73 7.18 -51.93 -0.37 1.35 16 30 H 0.02 0.52 7.14 -51.93 -0.37 0.15 16 31 H -0.01 -0.26 5.26 -51.93 -0.27 -0.54 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.07 1.09 7.71 -51.93 -0.40 0.69 16 34 H 0.03 0.48 5.66 -51.93 -0.29 0.18 16 35 H 0.36 3.46 8.31 45.56 0.38 3.83 16 36 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -31.60 330.42 -8.19 -39.79 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.19 Total: 2.84 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.70 Total: -17.22 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.31 Total: -38.28 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.34 Total: -7.21 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.65 Total: 16.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.60 -8.19 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292890471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.182 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds