Wall clock time and date at job start Tue Mar 31 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46905 * 109.46739 * 2 1 4 4 C 1.46905 * 110.99700 * 68.70056 * 3 2 1 5 5 C 1.50707 * 109.46867 * 71.35641 * 4 3 2 6 6 H 1.07991 * 120.00060 * 5.07352 * 5 4 3 7 7 C 1.37876 * 119.99604 * 185.07981 * 5 4 3 8 8 N 1.31512 * 119.99928 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00298 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47096 * 90.00018 * 9 7 5 11 11 H 1.48505 * 109.47284 * 210.00253 * 9 7 5 12 12 H 1.48497 * 109.47235 * 330.00443 * 9 7 5 13 13 C 1.46898 * 111.00278 * 304.75034 * 3 2 1 14 14 C 1.53003 * 109.47002 * 287.05258 * 13 3 2 15 15 H 1.08994 * 109.47053 * 304.07588 * 14 13 3 16 16 O 1.42899 * 109.46852 * 64.07196 * 14 13 3 17 17 C 1.52995 * 109.47021 * 184.07099 * 14 13 3 18 18 C 1.50703 * 109.46710 * 175.00306 * 17 14 13 19 19 C 1.38244 * 119.97748 * 90.00271 * 18 17 14 20 20 C 1.38198 * 120.02412 * 179.97438 * 19 18 17 21 21 C 1.38457 * 119.97632 * 0.22488 * 20 19 18 22 22 F 1.35099 * 120.02607 * 179.72710 * 21 20 19 23 23 C 1.38460 * 119.94896 * 359.50241 * 21 20 19 24 24 C 1.38199 * 119.97341 * 0.51653 * 23 21 20 25 25 H 1.08997 * 109.47796 * 65.18648 * 1 2 3 26 26 H 1.09000 * 109.46799 * 185.18615 * 1 2 3 27 27 H 1.08999 * 109.47326 * 305.17964 * 1 2 3 28 28 H 1.09001 * 109.47355 * 240.00951 * 2 1 3 29 29 H 1.09000 * 109.47519 * 120.00203 * 2 1 3 30 30 H 1.09004 * 109.46954 * 191.35114 * 4 3 2 31 31 H 1.08999 * 109.47364 * 311.35386 * 4 3 2 32 32 H 0.96996 * 120.00618 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47300 * 167.05371 * 13 3 2 34 34 H 1.09001 * 109.47361 * 47.05532 * 13 3 2 35 35 H 0.96694 * 114.00568 * 59.99978 * 16 14 13 36 36 H 1.09002 * 109.47410 * 55.00288 * 17 14 13 37 37 H 1.08998 * 109.47422 * 294.99586 * 17 14 13 38 38 H 1.07998 * 119.98161 * 359.97164 * 19 18 17 39 39 H 1.07998 * 120.00821 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.01219 * 180.25236 * 23 21 20 41 41 H 1.07996 * 119.98560 * 179.70604 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.7253 2.0474 1.2778 5 6 2.6102 1.4757 2.3554 6 1 3.3758 0.7578 2.1010 7 6 2.4422 1.8691 3.6661 8 7 3.2141 1.3699 4.6066 9 14 1.1183 3.1112 4.1062 10 1 -0.1458 2.3975 4.4188 11 1 1.5498 3.8959 5.2909 12 1 0.8984 4.0278 2.9587 13 6 1.4580 2.1420 -1.1268 14 6 2.1183 1.6836 -2.4287 15 1 3.1997 1.7916 -2.3452 16 8 1.7938 0.3131 -2.6704 17 6 1.6081 2.5408 -3.5886 18 6 2.3478 2.1722 -4.8488 19 6 1.8562 1.1765 -5.6722 20 6 2.5335 0.8380 -6.8283 21 6 3.7073 1.4935 -7.1595 22 9 4.3731 1.1597 -8.2866 23 6 4.1957 2.4945 -6.3370 24 6 3.5170 2.8310 -5.1812 25 1 -0.3634 0.4312 -0.9327 26 1 -0.3633 -1.0235 0.0929 27 1 -0.3634 0.5921 0.8399 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.9120 3.1172 1.1840 31 1 0.6803 1.8826 1.5404 32 1 3.0963 1.6469 5.5287 33 1 1.6453 3.2056 -0.9793 34 1 0.3837 1.9666 -1.1829 35 1 0.8459 0.1425 -2.7558 36 1 1.7761 3.5940 -3.3635 37 1 0.5416 2.3649 -3.7288 38 1 0.9426 0.6629 -5.4117 39 1 2.1495 0.0598 -7.4711 40 1 5.1090 3.0093 -6.5965 41 1 3.9003 3.6085 -4.5371 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292890471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:24 Heat of formation + Delta-G solvation = -90.633183 kcal Electronic energy + Delta-G solvation = -21870.220954 eV Core-core repulsion = 18470.589200 eV Total energy + Delta-G solvation = -3399.631753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.86373 -40.48782 -39.41113 -37.14028 -34.62363 -33.64040 -32.01275 -31.40367 -30.79697 -28.53021 -26.11665 -24.64050 -23.94482 -23.10482 -21.95492 -20.86181 -18.88203 -18.59474 -17.52089 -17.32044 -16.97435 -16.68551 -16.56606 -16.12566 -15.98375 -15.58761 -15.12404 -14.75266 -14.67356 -14.43118 -14.36317 -14.20871 -13.59249 -13.34881 -13.05651 -12.79809 -12.71426 -12.61533 -12.47306 -12.30325 -12.26536 -11.97882 -11.83002 -11.77356 -11.51331 -11.36350 -10.76510 -10.51708 -9.98836 -9.40761 -8.78548 -8.26315 -6.28669 0.21383 0.35554 1.33694 1.35900 1.46864 2.35160 2.65172 3.07414 3.29335 3.35799 3.60416 3.82129 3.87949 4.02448 4.20062 4.23852 4.35691 4.39980 4.43157 4.52686 4.54074 4.70693 4.71595 4.75263 4.84570 4.95423 5.00463 5.04842 5.18272 5.22724 5.24427 5.30544 5.33607 5.34929 5.55974 5.63597 5.69339 6.00616 6.07533 6.52935 6.76065 6.79935 7.00464 7.34959 8.91163 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032273 B = 0.003272 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.388910 B = 8555.328761 C = 8770.229894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.169 3.831 5 C -0.511 4.511 6 H 0.029 0.971 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.246 1.246 13 C 0.015 3.985 14 C 0.132 3.868 15 H 0.080 0.920 16 O -0.560 6.560 17 C -0.103 4.103 18 C -0.085 4.085 19 C -0.079 4.079 20 C -0.159 4.159 21 C 0.065 3.935 22 F -0.154 7.154 23 C -0.161 4.161 24 C -0.098 4.098 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.105 0.895 29 H 0.030 0.970 30 H 0.024 0.976 31 H -0.005 1.005 32 H 0.265 0.735 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.380 0.620 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.900 3.264 -23.393 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.078 4.078 3 N -0.265 5.265 4 C 0.042 3.958 5 C -0.550 4.550 6 H 0.048 0.952 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.170 1.170 13 C -0.113 4.113 14 C 0.072 3.928 15 H 0.098 0.902 16 O -0.367 6.367 17 C -0.140 4.140 18 C -0.085 4.085 19 C -0.096 4.096 20 C -0.178 4.178 21 C 0.046 3.954 22 F -0.132 7.132 23 C -0.180 4.180 24 C -0.116 4.116 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.123 0.877 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.012 0.988 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.675 3.188 -23.285 24.432 hybrid contribution -1.133 0.309 0.776 1.408 sum -7.808 3.497 -22.509 24.080 Atomic orbital electron populations 1.22299 0.97562 1.02226 1.01476 1.22270 0.93408 0.90125 1.02036 1.61979 1.59255 1.02745 1.02474 1.19980 0.93663 0.94224 0.87936 1.21307 1.17084 1.24748 0.91823 0.95234 1.25905 0.98729 0.98572 0.96167 1.70067 1.41670 1.46167 1.01480 0.85680 0.79017 0.79467 0.78538 1.19379 1.20895 1.16959 1.23001 0.98017 0.98484 0.91828 1.21733 0.99462 0.81195 0.90376 0.90179 1.86614 1.30079 1.25981 1.94057 1.21270 1.00706 1.01318 0.90744 1.19994 0.95724 0.96335 0.96465 1.21144 1.00400 0.95766 0.92330 1.21366 0.94824 1.01879 0.99731 1.18023 0.93690 0.98835 0.84847 1.91456 1.80259 1.91901 1.49631 1.21319 1.02284 0.98456 0.95933 1.21205 0.94514 1.00076 0.95798 0.90275 0.91511 0.94931 0.87748 0.95086 0.95807 0.98768 0.92569 0.90655 0.92611 0.77149 0.88663 0.88250 0.83014 0.83564 0.83893 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.11 9.15 71.98 0.66 -4.45 16 2 C 0.05 1.80 5.48 86.30 0.47 2.27 16 3 N -0.54 -21.21 4.61 -900.76 -4.15 -25.36 16 4 C 0.17 7.90 3.69 85.56 0.32 8.22 16 5 C -0.51 -29.91 8.94 25.60 0.23 -29.69 16 6 H 0.03 1.97 7.93 -2.92 -0.02 1.94 16 7 C 0.00 0.16 5.47 84.65 0.46 0.62 16 8 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 9 Si 0.95 43.91 27.37 68.60 1.88 45.79 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.25 -10.39 6.69 99.48 0.67 -9.73 16 13 C 0.01 0.40 4.58 86.30 0.40 0.80 16 14 C 0.13 2.94 3.18 30.59 0.10 3.03 16 15 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 16 O -0.56 -12.34 9.75 -148.98 -1.45 -13.79 16 17 C -0.10 -1.53 5.03 29.85 0.15 -1.38 16 18 C -0.08 -1.45 4.97 -19.86 -0.10 -1.55 16 19 C -0.08 -1.26 9.40 22.26 0.21 -1.05 16 20 C -0.16 -2.85 10.03 22.31 0.22 -2.62 16 21 C 0.07 1.36 7.30 22.37 0.16 1.52 16 22 F -0.15 -3.49 17.27 44.97 0.78 -2.72 16 23 C -0.16 -3.08 10.03 22.31 0.22 -2.86 16 24 C -0.10 -1.76 9.70 22.26 0.22 -1.54 16 25 H 0.08 1.69 5.65 -2.39 -0.01 1.68 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.03 1.09 6.26 -2.39 -0.01 1.07 16 28 H 0.10 3.45 5.53 -2.39 -0.01 3.44 16 29 H 0.03 1.40 7.18 -2.39 -0.02 1.38 16 30 H 0.02 1.10 7.14 -2.38 -0.02 1.09 16 31 H -0.01 -0.24 5.26 -2.39 -0.01 -0.25 16 32 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.07 2.03 7.71 -2.39 -0.02 2.01 16 34 H 0.06 1.30 5.66 -2.39 -0.01 1.28 16 35 H 0.38 5.50 8.31 -74.06 -0.62 4.88 16 36 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 37 H 0.10 1.05 8.08 -2.39 -0.02 1.04 16 38 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -71.81 330.42 1.45 -70.37 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.38 Total: 14.59 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 3.72 Total: -28.68 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -3.85 Total: -85.55 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.45 Total: -13.79 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -71.81 1.45 -70.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292890471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.267 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds