Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47389 * 2 1 4 4 C 1.46908 * 111.00018 * 163.37014 * 3 2 1 5 5 C 1.50693 * 109.47442 * 293.95343 * 4 3 2 6 6 H 1.08004 * 119.99507 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00329 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00380 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47180 * 89.99536 * 9 7 5 11 11 H 1.48495 * 109.47524 * 209.99945 * 9 7 5 12 12 H 1.48503 * 109.46968 * 330.00043 * 9 7 5 13 13 C 1.46902 * 111.00237 * 287.32520 * 3 2 1 14 14 C 1.52997 * 109.47478 * 163.98333 * 13 3 2 15 15 H 1.09004 * 109.47383 * 59.92467 * 14 13 3 16 16 O 1.42903 * 109.47072 * 299.92989 * 14 13 3 17 17 C 1.52999 * 109.47309 * 179.97438 * 14 13 3 18 18 C 1.50705 * 109.47039 * 184.99810 * 17 14 13 19 19 C 1.38239 * 119.97502 * 269.72667 * 18 17 14 20 20 C 1.38203 * 120.02782 * 179.72552 * 19 18 17 21 21 C 1.38456 * 119.96741 * 0.57112 * 20 19 18 22 22 F 1.35105 * 120.02325 * 179.68325 * 21 20 19 23 23 C 1.38456 * 119.95466 * 359.70109 * 21 20 19 24 24 C 1.38199 * 119.97139 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.46570 * 306.04329 * 1 2 3 26 26 H 1.08995 * 109.46693 * 66.03843 * 1 2 3 27 27 H 1.08996 * 109.47003 * 186.04560 * 1 2 3 28 28 H 1.09009 * 109.47193 * 239.99580 * 2 1 3 29 29 H 1.08999 * 109.47287 * 120.00687 * 2 1 3 30 30 H 1.08997 * 109.47084 * 53.95946 * 4 3 2 31 31 H 1.09008 * 109.46921 * 173.95002 * 4 3 2 32 32 H 0.96996 * 120.00377 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47052 * 283.98031 * 13 3 2 34 34 H 1.09002 * 109.46784 * 43.97986 * 13 3 2 35 35 H 0.96706 * 113.99477 * 304.91401 * 16 14 13 36 36 H 1.08992 * 109.46980 * 304.99692 * 17 14 13 37 37 H 1.08997 * 109.47060 * 65.00111 * 17 14 13 38 38 H 1.08008 * 119.98845 * 359.97438 * 19 18 17 39 39 H 1.07996 * 120.01468 * 180.24921 * 20 19 18 40 40 H 1.08002 * 120.01573 * 180.02562 * 23 21 20 41 41 H 1.08004 * 119.98540 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4342 1.4431 0.3925 5 6 3.5748 1.0132 1.8299 6 1 2.7008 0.7251 2.3953 7 6 4.8190 0.9877 2.4234 8 7 5.8833 1.3381 1.7348 9 14 4.9934 0.4541 4.2050 10 1 5.2098 -1.0139 4.2632 11 1 6.1526 1.1500 4.8191 12 1 3.7563 0.8019 4.9493 13 6 1.8102 2.0174 -1.3092 14 6 1.9503 3.5347 -1.1709 15 1 2.9485 3.7756 -0.8054 16 8 0.9745 4.0208 -0.2469 17 6 1.7327 4.1934 -2.5346 18 6 1.9910 5.6740 -2.4242 19 6 0.9560 6.5340 -2.1080 20 6 1.1928 7.8914 -2.0009 21 6 2.4650 8.3910 -2.2221 22 9 2.6965 9.7185 -2.1240 23 6 3.4998 7.5294 -2.5443 24 6 3.2617 6.1718 -2.6453 25 1 -0.3632 0.6047 0.8310 26 1 -0.3632 0.4174 -0.9391 27 1 -0.3633 -1.0219 0.1082 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.0158 0.7769 -0.2446 31 1 3.8005 2.4638 0.2810 32 1 6.7586 1.3205 2.1523 33 1 2.5537 1.6468 -2.0149 34 1 0.8115 1.7764 -1.6735 35 1 0.0658 3.7765 -0.4698 36 1 2.4181 3.7582 -3.2618 37 1 0.7054 4.0270 -2.8587 38 1 -0.0375 6.1446 -1.9406 39 1 0.3849 8.5626 -1.7499 40 1 4.4926 7.9180 -2.7167 41 1 4.0688 5.4994 -2.8962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292890472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = -78.190747 kcal Electronic energy + Delta-G solvation = -21881.497281 eV Core-core repulsion = 18482.405072 eV Total energy + Delta-G solvation = -3399.092209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.88475 -39.39943 -37.79598 -35.74247 -32.62101 -32.51064 -31.13428 -30.39902 -28.91640 -26.78760 -24.73532 -23.06450 -22.50232 -22.00176 -20.92313 -19.74431 -17.67080 -16.63339 -16.42940 -16.11993 -15.59739 -15.39167 -15.01484 -14.75315 -14.51746 -14.12567 -13.86974 -13.75529 -13.54379 -13.27461 -12.91690 -12.43301 -12.08739 -12.04225 -11.78480 -11.68322 -11.41707 -11.08600 -11.02510 -10.96239 -10.69883 -10.66290 -10.42359 -10.14421 -9.70269 -9.64631 -9.13071 -9.09635 -8.44630 -8.40898 -7.20186 -6.00814 -4.00983 1.14651 1.24125 3.33278 3.39806 3.44783 3.57162 4.26341 4.42964 4.56010 4.66856 4.83891 4.90471 4.94440 5.22299 5.28337 5.34885 5.35770 5.51086 5.61128 5.62739 5.78448 5.79335 5.90308 5.95761 6.04920 6.07345 6.10922 6.13257 6.23780 6.32236 6.43749 6.61539 6.69378 6.78280 6.89671 7.30233 7.33848 7.82435 8.09227 8.14728 8.24005 8.57630 9.06347 9.62905 11.10325 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.004195 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.960709 B = 6673.260064 C = 7799.294422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.525 5.525 4 C 0.192 3.808 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.023 3.977 14 C 0.120 3.880 15 H 0.103 0.897 16 O -0.537 6.537 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.076 4.076 20 C -0.154 4.154 21 C 0.086 3.914 22 F -0.145 7.145 23 C -0.152 4.152 24 C -0.089 4.089 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.015 0.985 29 H 0.085 0.915 30 H -0.013 1.013 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.361 0.639 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 7.645 -11.454 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.250 5.250 4 C 0.067 3.933 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.106 4.106 14 C 0.060 3.940 15 H 0.121 0.879 16 O -0.340 6.340 17 C -0.152 4.152 18 C -0.076 4.076 19 C -0.094 4.094 20 C -0.172 4.172 21 C 0.066 3.934 22 F -0.124 7.124 23 C -0.170 4.170 24 C -0.107 4.107 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.104 0.896 30 H 0.005 0.995 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.206 0.794 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.457 8.221 -10.781 16.530 hybrid contribution 0.416 -0.707 0.052 0.821 sum -9.042 7.514 -10.729 15.917 Atomic orbital electron populations 1.21800 0.96710 1.00383 1.01186 1.21970 0.94070 0.90430 1.00818 1.62072 1.23326 1.15638 1.23953 1.19753 0.80946 0.96761 0.95792 1.21147 0.92861 1.43777 0.96411 0.91879 1.24969 0.95836 0.95655 0.98121 1.69948 0.98573 1.48793 1.36688 0.86526 0.77729 0.78423 0.84932 1.20816 1.21283 1.19737 1.22765 1.00088 0.95145 0.92642 1.21918 0.94141 0.91261 0.86695 0.87929 1.86695 1.17784 1.77732 1.51797 1.21398 1.02830 0.91340 0.99664 1.19827 0.93323 0.95712 0.98717 1.20847 0.99419 0.91761 0.97363 1.21096 0.95635 0.96720 1.03799 1.17712 0.94729 0.77403 1.03512 1.91476 1.95336 1.31642 1.93959 1.21105 0.98810 0.93759 1.03371 1.20971 0.96837 0.94324 0.98549 0.91987 0.94073 0.93470 0.96714 0.89628 0.99503 0.95014 0.92994 0.95185 0.91850 0.79421 0.90051 0.90710 0.85188 0.85060 0.84938 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.88 37.16 0.37 -1.76 16 2 C 0.06 1.04 5.53 -3.83 -0.02 1.02 16 3 N -0.53 -10.87 4.27 -236.07 -1.01 -11.88 16 4 C 0.19 4.94 4.57 -4.98 -0.02 4.92 16 5 C -0.50 -14.15 8.27 -34.45 -0.29 -14.43 16 6 H 0.06 1.77 7.26 -52.48 -0.38 1.39 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.02 0.37 4.43 -3.82 -0.02 0.36 16 14 C 0.12 1.85 2.97 -26.73 -0.08 1.77 16 15 H 0.10 1.95 6.60 -51.93 -0.34 1.60 16 16 O -0.54 -8.63 12.72 -35.23 -0.45 -9.08 16 17 C -0.11 -1.31 5.05 -27.88 -0.14 -1.45 16 18 C -0.08 -0.93 4.96 -104.62 -0.52 -1.44 16 19 C -0.08 -0.87 9.41 -39.59 -0.37 -1.24 16 20 C -0.15 -1.80 10.03 -39.51 -0.40 -2.19 16 21 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 22 F -0.15 -1.92 17.27 2.25 0.04 -1.88 16 23 C -0.15 -1.86 10.03 -39.52 -0.40 -2.26 16 24 C -0.09 -1.09 9.70 -39.59 -0.38 -1.48 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.54 6.79 -51.93 -0.35 0.19 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.01 0.27 8.04 -51.92 -0.42 -0.15 16 29 H 0.09 1.81 6.58 -51.93 -0.34 1.47 16 30 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 31 H 0.03 0.87 6.41 -51.92 -0.33 0.54 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.06 0.88 6.43 -51.93 -0.33 0.54 16 35 H 0.36 4.34 9.03 45.56 0.41 4.75 16 36 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -31.48 342.30 -8.64 -40.12 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.44 Total: 2.71 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.65 Total: -15.93 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.27 Total: -37.92 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.45 Total: -9.08 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.48 -8.64 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292890472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.069 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds