Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47389 * 2 1 4 4 C 1.46908 * 111.00018 * 163.37014 * 3 2 1 5 5 C 1.50693 * 109.47442 * 293.95343 * 4 3 2 6 6 H 1.08004 * 119.99507 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00329 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00380 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47180 * 89.99536 * 9 7 5 11 11 H 1.48495 * 109.47524 * 209.99945 * 9 7 5 12 12 H 1.48503 * 109.46968 * 330.00043 * 9 7 5 13 13 C 1.46902 * 111.00237 * 287.32520 * 3 2 1 14 14 C 1.52997 * 109.47478 * 163.98333 * 13 3 2 15 15 H 1.09004 * 109.47383 * 59.92467 * 14 13 3 16 16 O 1.42903 * 109.47072 * 299.92989 * 14 13 3 17 17 C 1.52999 * 109.47309 * 179.97438 * 14 13 3 18 18 C 1.50705 * 109.47039 * 184.99810 * 17 14 13 19 19 C 1.38239 * 119.97502 * 269.72667 * 18 17 14 20 20 C 1.38203 * 120.02782 * 179.72552 * 19 18 17 21 21 C 1.38456 * 119.96741 * 0.57112 * 20 19 18 22 22 F 1.35105 * 120.02325 * 179.68325 * 21 20 19 23 23 C 1.38456 * 119.95466 * 359.70109 * 21 20 19 24 24 C 1.38199 * 119.97139 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.46570 * 306.04329 * 1 2 3 26 26 H 1.08995 * 109.46693 * 66.03843 * 1 2 3 27 27 H 1.08996 * 109.47003 * 186.04560 * 1 2 3 28 28 H 1.09009 * 109.47193 * 239.99580 * 2 1 3 29 29 H 1.08999 * 109.47287 * 120.00687 * 2 1 3 30 30 H 1.08997 * 109.47084 * 53.95946 * 4 3 2 31 31 H 1.09008 * 109.46921 * 173.95002 * 4 3 2 32 32 H 0.96996 * 120.00377 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47052 * 283.98031 * 13 3 2 34 34 H 1.09002 * 109.46784 * 43.97986 * 13 3 2 35 35 H 0.96706 * 113.99477 * 304.91401 * 16 14 13 36 36 H 1.08992 * 109.46980 * 304.99692 * 17 14 13 37 37 H 1.08997 * 109.47060 * 65.00111 * 17 14 13 38 38 H 1.08008 * 119.98845 * 359.97438 * 19 18 17 39 39 H 1.07996 * 120.01468 * 180.24921 * 20 19 18 40 40 H 1.08002 * 120.01573 * 180.02562 * 23 21 20 41 41 H 1.08004 * 119.98540 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4342 1.4431 0.3925 5 6 3.5748 1.0132 1.8299 6 1 2.7008 0.7251 2.3953 7 6 4.8190 0.9877 2.4234 8 7 5.8833 1.3381 1.7348 9 14 4.9934 0.4541 4.2050 10 1 5.2098 -1.0139 4.2632 11 1 6.1526 1.1500 4.8191 12 1 3.7563 0.8019 4.9493 13 6 1.8102 2.0174 -1.3092 14 6 1.9503 3.5347 -1.1709 15 1 2.9485 3.7756 -0.8054 16 8 0.9745 4.0208 -0.2469 17 6 1.7327 4.1934 -2.5346 18 6 1.9910 5.6740 -2.4242 19 6 0.9560 6.5340 -2.1080 20 6 1.1928 7.8914 -2.0009 21 6 2.4650 8.3910 -2.2221 22 9 2.6965 9.7185 -2.1240 23 6 3.4998 7.5294 -2.5443 24 6 3.2617 6.1718 -2.6453 25 1 -0.3632 0.6047 0.8310 26 1 -0.3632 0.4174 -0.9391 27 1 -0.3633 -1.0219 0.1082 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.0158 0.7769 -0.2446 31 1 3.8005 2.4638 0.2810 32 1 6.7586 1.3205 2.1523 33 1 2.5537 1.6468 -2.0149 34 1 0.8115 1.7764 -1.6735 35 1 0.0658 3.7765 -0.4698 36 1 2.4181 3.7582 -3.2618 37 1 0.7054 4.0270 -2.8587 38 1 -0.0375 6.1446 -1.9406 39 1 0.3849 8.5626 -1.7499 40 1 4.4926 7.9180 -2.7167 41 1 4.0688 5.4994 -2.8962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292890472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = -99.006920 kcal Electronic energy + Delta-G solvation = -21882.399938 eV Core-core repulsion = 18482.405072 eV Total energy + Delta-G solvation = -3399.994866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87967 -40.39766 -39.13548 -37.16346 -34.72053 -33.55948 -32.04138 -31.76512 -30.41858 -28.37317 -26.12979 -24.36550 -23.96658 -23.18738 -21.96612 -21.31363 -18.66168 -18.57206 -17.52890 -17.36992 -16.85150 -16.59474 -16.35668 -16.04761 -15.98666 -15.55930 -15.24602 -14.92209 -14.47822 -14.32884 -14.24003 -14.13133 -13.90581 -13.19632 -12.93897 -12.80162 -12.78749 -12.59112 -12.52351 -12.38654 -12.33597 -12.02308 -11.85540 -11.75563 -11.31805 -11.23496 -10.78430 -10.59381 -10.01291 -9.42501 -8.89183 -8.19629 -6.28169 0.19161 0.32999 1.39221 1.41161 1.52556 2.40441 2.62684 3.12725 3.25353 3.32795 3.72246 3.77813 3.87021 3.99402 4.11474 4.26043 4.28117 4.40058 4.40541 4.51279 4.62262 4.65267 4.72820 4.81330 4.91348 4.99904 5.07154 5.11312 5.17500 5.19558 5.22341 5.28288 5.32131 5.38755 5.51339 5.65078 5.67609 5.98524 6.10446 6.41979 6.71685 6.88631 7.15298 7.41090 8.91430 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.004195 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.960709 B = 6673.260064 C = 7799.294422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.533 5.533 4 C 0.209 3.791 5 C -0.519 4.519 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.023 3.977 14 C 0.129 3.871 15 H 0.055 0.945 16 O -0.557 6.557 17 C -0.100 4.100 18 C -0.087 4.087 19 C -0.076 4.076 20 C -0.157 4.157 21 C 0.066 3.934 22 F -0.152 7.152 23 C -0.162 4.162 24 C -0.104 4.104 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.018 0.982 29 H 0.053 0.947 30 H -0.044 1.044 31 H 0.005 0.995 32 H 0.263 0.737 33 H 0.025 0.975 34 H 0.102 0.898 35 H 0.380 0.620 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.282 7.235 -11.690 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.076 4.076 3 N -0.257 5.257 4 C 0.083 3.917 5 C -0.557 4.557 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.105 4.105 14 C 0.069 3.931 15 H 0.073 0.927 16 O -0.363 6.363 17 C -0.138 4.138 18 C -0.087 4.087 19 C -0.094 4.094 20 C -0.175 4.175 21 C 0.047 3.953 22 F -0.130 7.130 23 C -0.181 4.181 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.072 0.928 30 H -0.026 1.026 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.120 0.880 35 H 0.229 0.771 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.837 7.803 -11.034 17.965 hybrid contribution 1.122 -0.573 0.092 1.263 sum -10.716 7.230 -10.942 16.936 Atomic orbital electron populations 1.21685 0.92914 1.01882 1.02230 1.22030 0.97047 0.89082 0.99466 1.62007 1.19618 1.17124 1.26958 1.19350 0.83805 0.94093 0.94451 1.21475 0.92937 1.43696 0.97641 0.92211 1.25867 0.95486 0.95599 1.02680 1.70075 0.99091 1.49816 1.38638 0.85455 0.77800 0.78438 0.79398 1.19630 1.20871 1.19085 1.22907 1.01953 0.95360 0.90327 1.21652 0.92103 0.90899 0.88484 0.92661 1.86648 1.19184 1.77906 1.52595 1.21271 1.05061 0.90392 0.97097 1.20023 0.93488 0.96308 0.98884 1.21161 1.00345 0.91511 0.96410 1.21389 0.95688 0.97363 1.03094 1.17975 0.95568 0.77283 1.04425 1.91456 1.95441 1.32030 1.94109 1.21290 0.99437 0.93900 1.03428 1.21176 0.97479 0.94541 0.98967 0.92750 0.91500 0.91414 0.96377 0.92802 1.02623 0.97725 0.92820 0.95633 0.87990 0.77141 0.89260 0.87404 0.82661 0.83085 0.83980 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.88 71.98 0.71 -2.75 16 2 C 0.05 1.91 5.53 86.31 0.48 2.39 16 3 N -0.53 -22.05 4.27 -900.79 -3.85 -25.89 16 4 C 0.21 11.20 4.57 85.55 0.39 11.59 16 5 C -0.52 -29.97 8.27 25.60 0.21 -29.76 16 6 H 0.06 3.41 7.26 -2.91 -0.02 3.39 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.94 -57.22 13.29 21.44 0.28 -56.93 16 9 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.02 0.72 4.43 86.30 0.38 1.10 16 14 C 0.13 3.87 2.97 30.59 0.09 3.96 16 15 H 0.06 2.20 6.60 -2.38 -0.02 2.18 16 16 O -0.56 -17.01 12.72 -148.98 -1.89 -18.91 16 17 C -0.10 -2.09 5.05 29.85 0.15 -1.94 16 18 C -0.09 -2.01 4.96 -19.86 -0.10 -2.11 16 19 C -0.08 -1.59 9.41 22.26 0.21 -1.38 16 20 C -0.16 -3.43 10.03 22.31 0.22 -3.21 16 21 C 0.07 1.68 7.30 22.37 0.16 1.84 16 22 F -0.15 -3.98 17.27 44.97 0.78 -3.20 16 23 C -0.16 -3.99 10.03 22.31 0.22 -3.77 16 24 C -0.10 -2.55 9.70 22.26 0.22 -2.33 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.45 6.79 -2.39 -0.02 1.43 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.02 0.65 8.04 -2.38 -0.02 0.63 16 29 H 0.05 2.30 6.58 -2.39 -0.02 2.29 16 30 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 31 H 0.00 0.27 6.41 -2.38 -0.02 0.26 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.03 0.83 8.05 -2.39 -0.02 0.82 16 34 H 0.10 2.41 6.43 -2.39 -0.02 2.40 16 35 H 0.38 7.91 9.03 -74.05 -0.67 7.24 16 36 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 37 H 0.11 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 41 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -70.44 342.30 1.51 -68.93 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.35 Total: 14.57 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 3.82 Total: -25.83 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -3.56 Total: -82.83 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.89 Total: -18.91 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.44 1.51 -68.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292890472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.077 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds