Wall clock time and date at job start Tue Mar 31 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 N 1.46504 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99347 * 88.67686 * 4 3 2 6 6 H 1.07999 * 120.00111 * 34.21481 * 5 4 3 7 7 C 1.38815 * 119.99876 * 213.92934 * 5 4 3 8 8 N 1.31610 * 119.99762 * 23.07302 * 7 5 4 9 9 Si 1.86796 * 119.99848 * 203.06895 * 7 5 4 10 10 H 1.48498 * 109.47304 * 60.00478 * 9 7 5 11 11 H 1.48496 * 109.46917 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47420 * 300.00237 * 9 7 5 13 13 C 1.46498 * 120.00557 * 268.68221 * 4 3 2 14 14 C 1.53006 * 109.46688 * 270.00053 * 13 4 3 15 15 H 1.09002 * 109.47183 * 304.99688 * 14 13 4 16 16 O 1.42897 * 109.47249 * 64.99772 * 14 13 4 17 17 C 1.53002 * 109.46759 * 184.99774 * 14 13 4 18 18 C 1.50697 * 109.47102 * 174.99721 * 17 14 13 19 19 C 1.38251 * 119.97499 * 269.73074 * 18 17 14 20 20 C 1.38198 * 120.02341 * 179.72660 * 19 18 17 21 21 C 1.38467 * 119.97318 * 0.56314 * 20 19 18 22 22 F 1.35096 * 120.02203 * 179.68281 * 21 20 19 23 23 C 1.38458 * 119.95084 * 359.70940 * 21 20 19 24 24 C 1.38203 * 119.97145 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.47591 * 59.99972 * 1 2 3 26 26 H 1.09003 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47221 * 299.99690 * 1 2 3 28 28 H 1.08996 * 109.47089 * 240.00352 * 2 1 3 29 29 H 1.09002 * 109.47144 * 119.99957 * 2 1 3 30 30 H 1.09003 * 109.47382 * 60.00213 * 3 2 1 31 31 H 1.08993 * 109.47477 * 299.99690 * 3 2 1 32 32 H 0.97005 * 120.00298 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46815 * 29.99227 * 13 4 3 34 34 H 1.08993 * 109.47417 * 150.00078 * 13 4 3 35 35 H 0.96698 * 113.99953 * 60.00411 * 16 14 13 36 36 H 1.09000 * 109.47075 * 295.00226 * 17 14 13 37 37 H 1.09003 * 109.47196 * 55.00053 * 17 14 13 38 38 H 1.07993 * 119.98646 * 359.97438 * 19 18 17 39 39 H 1.07999 * 120.01589 * 180.24984 * 20 19 18 40 40 H 1.07993 * 120.01203 * 179.97438 * 23 21 20 41 41 H 1.08002 * 119.98648 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.4151 -1.1848 6 1 3.7905 1.9209 -2.0513 7 6 5.4009 0.7419 -1.2711 8 7 5.6814 -0.2199 -0.4176 9 14 6.6322 1.2010 -2.5987 10 1 7.0238 2.6246 -2.4397 11 1 7.8356 0.3396 -2.4769 12 1 6.0158 1.0035 -3.9352 13 6 4.2370 1.4720 1.2692 14 6 4.4918 2.9244 1.6774 15 1 5.0038 3.4448 0.8680 16 8 3.2452 3.5696 1.9452 17 6 5.3626 2.9554 2.9350 18 6 5.7156 4.3824 3.2666 19 6 6.8633 4.9493 2.7444 20 6 7.1850 6.2597 3.0433 21 6 6.3633 7.0012 3.8754 22 9 6.6802 8.2802 4.1734 23 6 5.2171 6.4306 4.4023 24 6 4.8940 5.1221 4.0968 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 6.5277 -0.6901 -0.4776 33 1 3.6476 0.9760 2.0404 34 1 5.1894 0.9554 1.1512 35 1 2.7345 3.1589 2.6562 36 1 4.8147 2.5138 3.7674 37 1 6.2758 2.3869 2.7588 38 1 7.5066 4.3692 2.0996 39 1 8.0795 6.7037 2.6321 40 1 4.5758 7.0079 5.0517 41 1 3.9998 4.6769 4.5073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293163472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:53 Heat of formation + Delta-G solvation = -69.690016 kcal Electronic energy + Delta-G solvation = -22150.494277 eV Core-core repulsion = 18751.770688 eV Total energy + Delta-G solvation = -3398.723590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.82519 -39.21993 -37.26462 -35.26919 -32.87372 -32.26819 -31.04054 -30.67490 -28.65968 -25.61381 -25.45665 -22.96286 -22.57349 -21.32152 -20.71100 -19.86910 -17.59414 -16.98139 -16.31949 -15.63953 -15.53239 -15.13708 -14.97144 -14.49171 -14.22296 -13.94194 -13.75893 -13.64816 -13.44173 -13.13894 -12.94331 -12.54432 -12.01179 -11.67480 -11.53442 -11.40627 -11.26621 -10.95454 -10.85128 -10.76144 -10.56762 -10.34621 -10.24811 -10.02050 -9.94661 -9.64025 -9.34757 -9.01321 -8.52891 -8.31457 -6.57221 -5.79392 -3.32399 1.25623 1.32942 3.35303 3.41326 3.44609 3.68911 4.34038 4.47283 4.78418 4.86966 4.94328 5.15283 5.26971 5.36259 5.38482 5.44800 5.68008 5.77901 5.82947 5.89767 5.95698 6.05139 6.17526 6.19051 6.25166 6.30770 6.34882 6.37835 6.46225 6.55822 6.69606 6.72482 6.76608 7.00139 7.08882 7.11081 7.30160 7.54677 7.81152 8.33204 8.49138 9.17797 9.82133 10.38942 11.19340 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.004910 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.064167 B = 5701.365738 C = 7008.673675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.153 3.847 4 N -0.578 5.578 5 C -0.251 4.251 6 H 0.060 0.940 7 C 0.006 3.994 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.117 3.883 14 C 0.091 3.909 15 H 0.095 0.905 16 O -0.558 6.558 17 C -0.115 4.115 18 C -0.069 4.069 19 C -0.091 4.091 20 C -0.152 4.152 21 C 0.080 3.920 22 F -0.147 7.147 23 C -0.154 4.154 24 C -0.080 4.080 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.254 0.746 33 H 0.024 0.976 34 H 0.107 0.893 35 H 0.356 0.644 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 7.237 9.698 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.027 3.973 4 N -0.296 5.296 5 C -0.381 4.381 6 H 0.078 0.922 7 C -0.193 4.193 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.208 1.208 13 C -0.010 4.010 14 C 0.030 3.970 15 H 0.113 0.887 16 O -0.361 6.361 17 C -0.153 4.153 18 C -0.069 4.069 19 C -0.109 4.109 20 C -0.171 4.171 21 C 0.061 3.939 22 F -0.126 7.126 23 C -0.172 4.172 24 C -0.098 4.098 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.124 0.876 35 H 0.200 0.800 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.978 7.556 9.200 11.946 hybrid contribution 0.677 0.030 -0.218 0.712 sum -0.301 7.587 8.982 11.762 Atomic orbital electron populations 1.21754 0.97869 1.00180 1.00677 1.22120 0.92963 1.01223 1.01851 1.20912 0.85075 0.92812 0.98507 1.43689 0.99470 1.84462 1.02006 1.19069 1.02770 1.26149 0.90067 0.92193 1.25029 1.00699 0.95440 0.98130 1.69954 1.23687 1.20795 1.38911 0.86515 0.81081 0.78106 0.82073 1.20962 1.21653 1.20773 1.21625 1.00797 0.91810 0.86776 1.22898 0.82777 0.97858 0.93453 0.88707 1.86605 1.33204 1.58167 1.58157 1.21436 1.02170 0.91620 1.00115 1.20017 0.93970 0.97108 0.95817 1.20995 0.96935 0.94120 0.98898 1.21089 1.00714 0.95222 1.00067 1.17684 0.96614 0.79396 1.00255 1.91461 1.92864 1.36174 1.92110 1.21075 0.96800 0.96631 1.02740 1.20853 0.98842 0.92911 0.97177 0.93451 0.94012 0.93694 0.92092 0.93278 0.94292 0.94418 0.93580 0.95712 0.87589 0.79955 0.91065 0.89852 0.84997 0.85143 0.85230 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.14 -2.75 6.26 -26.73 -0.17 -2.92 16 3 C 0.15 3.18 5.48 -4.04 -0.02 3.16 16 4 N -0.58 -13.70 2.42 -173.24 -0.42 -14.12 16 5 C -0.25 -6.65 9.49 -15.06 -0.14 -6.79 16 6 H 0.06 1.62 7.93 -52.49 -0.42 1.21 16 7 C 0.01 0.17 4.95 -17.43 -0.09 0.08 16 8 N -0.89 -24.35 11.32 55.49 0.63 -23.72 16 9 Si 0.89 21.03 29.61 -169.99 -5.03 16.00 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.12 2.49 4.95 -4.04 -0.02 2.47 16 14 C 0.09 1.66 3.20 -26.73 -0.09 1.58 16 15 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 16 O -0.56 -9.61 11.68 -35.23 -0.41 -10.02 16 17 C -0.12 -1.68 5.03 -27.88 -0.14 -1.82 16 18 C -0.07 -0.97 4.97 -104.62 -0.52 -1.49 16 19 C -0.09 -1.27 9.70 -39.59 -0.38 -1.65 16 20 C -0.15 -2.01 10.03 -39.51 -0.40 -2.41 16 21 C 0.08 1.08 7.30 -39.42 -0.29 0.79 16 22 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 23 C -0.15 -1.94 10.03 -39.51 -0.40 -2.33 16 24 C -0.08 -1.02 9.40 -39.59 -0.37 -1.39 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.02 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.11 2.58 5.31 -51.93 -0.28 2.30 16 35 H 0.36 4.84 9.04 45.56 0.41 5.25 16 36 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 38 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -28.58 345.38 -8.33 -36.91 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.69 Total: 6.36 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -2.65 Total: -14.63 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.21 Total: -37.84 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.41 Total: -10.02 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.58 -8.33 -36.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293163472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.777 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds