Wall clock time and date at job start Tue Mar 31 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 N 1.46504 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99347 * 88.67686 * 4 3 2 6 6 H 1.07999 * 120.00111 * 34.21481 * 5 4 3 7 7 C 1.38815 * 119.99876 * 213.92934 * 5 4 3 8 8 N 1.31610 * 119.99762 * 23.07302 * 7 5 4 9 9 Si 1.86796 * 119.99848 * 203.06895 * 7 5 4 10 10 H 1.48498 * 109.47304 * 60.00478 * 9 7 5 11 11 H 1.48496 * 109.46917 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47420 * 300.00237 * 9 7 5 13 13 C 1.46498 * 120.00557 * 268.68221 * 4 3 2 14 14 C 1.53006 * 109.46688 * 270.00053 * 13 4 3 15 15 H 1.09002 * 109.47183 * 304.99688 * 14 13 4 16 16 O 1.42897 * 109.47249 * 64.99772 * 14 13 4 17 17 C 1.53002 * 109.46759 * 184.99774 * 14 13 4 18 18 C 1.50697 * 109.47102 * 174.99721 * 17 14 13 19 19 C 1.38251 * 119.97499 * 269.73074 * 18 17 14 20 20 C 1.38198 * 120.02341 * 179.72660 * 19 18 17 21 21 C 1.38467 * 119.97318 * 0.56314 * 20 19 18 22 22 F 1.35096 * 120.02203 * 179.68281 * 21 20 19 23 23 C 1.38458 * 119.95084 * 359.70940 * 21 20 19 24 24 C 1.38203 * 119.97145 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.47591 * 59.99972 * 1 2 3 26 26 H 1.09003 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47221 * 299.99690 * 1 2 3 28 28 H 1.08996 * 109.47089 * 240.00352 * 2 1 3 29 29 H 1.09002 * 109.47144 * 119.99957 * 2 1 3 30 30 H 1.09003 * 109.47382 * 60.00213 * 3 2 1 31 31 H 1.08993 * 109.47477 * 299.99690 * 3 2 1 32 32 H 0.97005 * 120.00298 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46815 * 29.99227 * 13 4 3 34 34 H 1.08993 * 109.47417 * 150.00078 * 13 4 3 35 35 H 0.96698 * 113.99953 * 60.00411 * 16 14 13 36 36 H 1.09000 * 109.47075 * 295.00226 * 17 14 13 37 37 H 1.09003 * 109.47196 * 55.00053 * 17 14 13 38 38 H 1.07993 * 119.98646 * 359.97438 * 19 18 17 39 39 H 1.07999 * 120.01589 * 180.24984 * 20 19 18 40 40 H 1.07993 * 120.01203 * 179.97438 * 23 21 20 41 41 H 1.08002 * 119.98648 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.4151 -1.1848 6 1 3.7905 1.9209 -2.0513 7 6 5.4009 0.7419 -1.2711 8 7 5.6814 -0.2199 -0.4176 9 14 6.6322 1.2010 -2.5987 10 1 7.0238 2.6246 -2.4397 11 1 7.8356 0.3396 -2.4769 12 1 6.0158 1.0035 -3.9352 13 6 4.2370 1.4720 1.2692 14 6 4.4918 2.9244 1.6774 15 1 5.0038 3.4448 0.8680 16 8 3.2452 3.5696 1.9452 17 6 5.3626 2.9554 2.9350 18 6 5.7156 4.3824 3.2666 19 6 6.8633 4.9493 2.7444 20 6 7.1850 6.2597 3.0433 21 6 6.3633 7.0012 3.8754 22 9 6.6802 8.2802 4.1734 23 6 5.2171 6.4306 4.4023 24 6 4.8940 5.1221 4.0968 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 6.5277 -0.6901 -0.4776 33 1 3.6476 0.9760 2.0404 34 1 5.1894 0.9554 1.1512 35 1 2.7345 3.1589 2.6562 36 1 4.8147 2.5138 3.7674 37 1 6.2758 2.3869 2.7588 38 1 7.5066 4.3692 2.0996 39 1 8.0795 6.7037 2.6321 40 1 4.5758 7.0079 5.0517 41 1 3.9998 4.6769 4.5073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293163472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:53 Heat of formation + Delta-G solvation = -84.969357 kcal Electronic energy + Delta-G solvation = -22151.156839 eV Core-core repulsion = 18751.770688 eV Total energy + Delta-G solvation = -3399.386152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.87446 -40.32331 -38.75024 -36.86624 -34.57946 -33.48494 -32.45575 -32.03745 -30.04950 -27.29115 -26.96390 -24.12021 -23.94100 -22.76440 -21.95814 -21.55101 -18.84261 -18.58167 -17.42274 -17.05951 -16.83024 -16.57547 -16.31307 -15.98741 -15.83208 -15.28008 -15.25539 -14.97674 -14.57390 -14.43107 -14.25695 -13.93380 -13.45341 -13.17811 -12.94846 -12.69146 -12.63105 -12.60081 -12.51715 -12.14976 -12.08149 -11.87654 -11.84736 -11.70415 -11.58516 -11.29633 -10.83850 -10.50315 -10.01586 -9.43462 -8.49350 -7.77656 -5.35086 0.20215 0.32738 1.45123 1.47880 1.54149 2.52376 2.65054 3.23876 3.32175 3.58950 3.78746 3.86371 3.93979 4.01897 4.27047 4.32008 4.40765 4.45374 4.47983 4.52957 4.72334 4.74643 4.83280 4.90284 5.01249 5.02537 5.05312 5.18254 5.19106 5.24357 5.29302 5.32763 5.46798 5.50286 5.63809 5.67126 5.71150 5.85146 5.98737 6.49101 7.10078 7.22573 7.93988 8.43048 9.15328 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.004910 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.064167 B = 5701.365738 C = 7008.673675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.152 3.848 4 N -0.594 5.594 5 C -0.262 4.262 6 H 0.046 0.954 7 C -0.032 4.032 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.119 3.881 14 C 0.112 3.888 15 H 0.057 0.943 16 O -0.564 6.564 17 C -0.103 4.103 18 C -0.082 4.082 19 C -0.105 4.105 20 C -0.158 4.158 21 C 0.067 3.933 22 F -0.150 7.150 23 C -0.153 4.153 24 C -0.078 4.078 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.252 0.748 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.375 0.625 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 8.040 11.055 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.027 3.973 4 N -0.314 5.314 5 C -0.392 4.392 6 H 0.064 0.936 7 C -0.230 4.230 8 N -0.556 5.556 9 Si 0.773 3.227 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.207 1.207 13 C -0.008 4.008 14 C 0.051 3.949 15 H 0.075 0.925 16 O -0.370 6.370 17 C -0.141 4.141 18 C -0.083 4.083 19 C -0.123 4.123 20 C -0.176 4.176 21 C 0.048 3.952 22 F -0.129 7.129 23 C -0.171 4.171 24 C -0.096 4.096 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.223 0.777 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.099 8.367 10.575 13.647 hybrid contribution 0.958 -0.185 -0.611 1.151 sum -1.141 8.182 9.964 12.943 Atomic orbital electron populations 1.21660 0.94296 1.01550 1.01977 1.21961 0.96040 0.99649 0.99568 1.21003 0.83612 0.93686 0.99048 1.43924 1.00751 1.84778 1.01938 1.19176 1.03470 1.25699 0.90887 0.93606 1.25544 1.01863 0.95545 1.00011 1.70062 1.23757 1.21578 1.40251 0.85699 0.79222 0.77676 0.80072 1.20811 1.21570 1.20707 1.21589 0.99261 0.93699 0.86205 1.22330 0.83672 0.94816 0.94118 0.92474 1.86558 1.33017 1.58140 1.59308 1.21247 1.01366 0.92468 0.99006 1.20041 0.94595 0.96821 0.96813 1.21123 0.97365 0.94592 0.99266 1.21258 1.01319 0.95022 1.00043 1.17912 0.97225 0.79414 1.00629 1.91454 1.92948 1.36336 1.92148 1.21364 0.96557 0.96728 1.02479 1.21112 0.99188 0.92865 0.96450 0.92915 0.92663 0.91591 0.95653 0.94244 0.91969 0.95442 0.93912 0.94482 0.90543 0.77712 0.88558 0.90631 0.85066 0.83796 0.82887 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.13 -5.08 6.26 30.59 0.19 -4.88 16 3 C 0.15 6.21 5.48 86.38 0.47 6.69 16 4 N -0.59 -28.44 2.42 -702.00 -1.70 -30.14 16 5 C -0.26 -14.19 9.49 84.03 0.80 -13.39 16 6 H 0.05 2.56 7.93 -2.91 -0.02 2.54 16 7 C -0.03 -1.75 4.95 84.86 0.42 -1.33 16 8 N -0.91 -50.95 11.32 21.65 0.25 -50.71 16 9 Si 0.94 44.00 29.61 68.60 2.03 46.03 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.12 5.07 4.95 86.38 0.43 5.49 16 14 C 0.11 4.01 3.20 30.60 0.10 4.11 16 15 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 16 O -0.56 -18.26 11.68 -148.98 -1.74 -20.00 16 17 C -0.10 -2.87 5.03 29.85 0.15 -2.72 16 18 C -0.08 -2.20 4.97 -19.86 -0.10 -2.30 16 19 C -0.11 -2.86 9.70 22.26 0.22 -2.65 16 20 C -0.16 -4.02 10.03 22.31 0.22 -3.80 16 21 C 0.07 1.72 7.30 22.38 0.16 1.88 16 22 F -0.15 -3.90 17.27 44.97 0.78 -3.13 16 23 C -0.15 -3.46 10.03 22.31 0.22 -3.23 16 24 C -0.08 -1.79 9.40 22.26 0.21 -1.58 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 2.22 7.13 -2.39 -0.02 2.21 16 31 H 0.03 1.16 8.05 -2.39 -0.02 1.14 16 32 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 33 H 0.04 1.45 8.07 -2.39 -0.02 1.43 16 34 H 0.08 3.80 5.31 -2.39 -0.01 3.78 16 35 H 0.38 8.94 9.04 -74.06 -0.67 8.27 16 36 H 0.10 2.20 8.09 -2.39 -0.02 2.18 16 37 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 38 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -62.08 345.38 4.17 -57.91 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.34 Total: 20.94 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.21 Total: -20.91 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.45 Total: -80.84 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.74 Total: -20.00 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.08 4.17 -57.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293163472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.055 kcal (2) G-P(sol) polarization free energy of solvation -62.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds