Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46819 * 2 1 4 4 N 1.46895 * 109.46907 * 173.48994 * 3 2 1 5 5 C 1.46901 * 111.00035 * 192.06129 * 4 3 2 6 6 C 1.53002 * 109.47390 * 66.04321 * 5 4 3 7 7 C 1.50705 * 109.47122 * 180.02562 * 6 5 4 8 8 C 1.33387 * 125.20311 * 90.00117 * 7 6 5 9 9 C 1.38416 * 114.91845 * 179.97438 * 8 7 6 10 10 C 1.33391 * 114.92685 * 0.02562 * 9 8 7 11 11 S 1.75886 * 125.20043 * 269.69641 * 7 6 5 12 12 C 1.46902 * 111.00105 * 68.10471 * 4 3 2 13 13 H 1.09000 * 109.46869 * 151.16710 * 12 4 3 14 14 C 1.52995 * 109.47208 * 31.17173 * 12 4 3 15 15 C 1.53000 * 109.47247 * 271.16777 * 12 4 3 16 16 C 1.50705 * 109.47228 * 299.22945 * 15 12 4 17 17 H 1.07999 * 119.99879 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00080 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47555 * 89.99620 * 20 18 16 22 22 H 1.48497 * 109.46850 * 210.00087 * 20 18 16 23 23 H 1.48506 * 109.46971 * 329.99546 * 20 18 16 24 24 H 1.09000 * 109.46727 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47610 * 299.99680 * 1 2 3 26 26 H 1.09004 * 109.47164 * 60.00459 * 1 2 3 27 27 H 1.08997 * 109.47610 * 240.00320 * 2 1 3 28 28 H 1.09001 * 109.47461 * 119.99948 * 2 1 3 29 29 H 1.09000 * 109.47033 * 53.49508 * 3 2 1 30 30 H 1.08995 * 109.47091 * 293.49422 * 3 2 1 31 31 H 1.09005 * 109.47550 * 186.04932 * 5 4 3 32 32 H 1.09008 * 109.47053 * 306.04425 * 5 4 3 33 33 H 1.08994 * 109.46943 * 300.00496 * 6 5 4 34 34 H 1.08995 * 109.46573 * 60.00546 * 6 5 4 35 35 H 1.07994 * 122.53861 * 359.95921 * 8 7 6 36 36 H 1.08004 * 122.53778 * 180.02562 * 9 8 7 37 37 H 1.07997 * 125.20671 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47613 * 59.99265 * 14 12 4 39 39 H 1.08991 * 109.47531 * 180.02562 * 14 12 4 40 40 H 1.09003 * 109.46554 * 300.00007 * 14 12 4 41 41 H 1.09002 * 109.46978 * 59.22680 * 15 12 4 42 42 H 1.08998 * 109.46948 * 179.22936 * 15 12 4 43 43 H 0.96992 * 119.99888 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5005 1.4456 0.1570 5 6 3.9960 2.7977 0.4473 6 6 3.4817 3.2463 1.8167 7 6 3.9896 4.6337 2.1142 8 6 3.3631 5.7669 1.7941 9 6 4.0225 6.9242 2.1705 10 6 5.1849 6.7309 2.7957 11 16 5.4954 5.0060 2.9434 12 6 4.1589 0.8875 -1.0317 13 1 5.1463 1.3353 -1.1439 14 6 3.3166 1.1928 -2.2719 15 6 4.3011 -0.6275 -0.8720 16 6 5.1466 -0.9278 0.3388 17 1 5.5433 -0.1190 0.9346 18 6 5.4138 -2.2351 0.6860 19 7 4.9304 -3.2200 -0.0392 20 14 6.4613 -2.6074 2.1872 21 1 5.5882 -2.7295 3.3822 22 1 7.1930 -3.8823 1.9764 23 1 7.4355 -1.5063 2.3964 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5846 1.9889 0.8260 30 1 1.7748 1.9217 -0.9424 31 1 5.0860 2.7920 0.4526 32 1 3.6400 3.4873 -0.3182 33 1 2.3918 3.2520 1.8114 34 1 3.8377 2.5568 2.5821 35 1 2.4134 5.7804 1.2801 36 1 3.6260 7.9092 1.9728 37 1 5.8335 7.5137 3.1603 38 1 3.2152 2.2721 -2.3856 39 1 3.8049 0.7784 -3.1538 40 1 2.3292 0.7451 -2.1595 41 1 3.3146 -1.0737 -0.7460 42 1 4.7773 -1.0433 -1.7599 43 1 5.1180 -4.1397 0.2053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299209119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = 30.600538 kcal Electronic energy + Delta-G solvation = -20381.113256 eV Core-core repulsion = 17552.951768 eV Total energy + Delta-G solvation = -2828.161489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.73109 -37.72755 -33.73063 -33.04040 -32.03220 -30.03909 -27.52386 -27.00530 -25.58922 -23.69340 -22.93258 -21.44069 -20.50067 -19.16255 -18.84906 -17.09150 -16.18667 -15.84540 -15.34732 -14.72751 -14.52895 -14.26136 -13.58003 -13.25220 -13.01563 -12.86894 -12.65982 -12.43436 -12.19971 -12.04551 -11.93766 -11.67662 -11.54374 -11.32557 -11.05785 -11.01229 -10.73936 -10.65765 -10.45683 -10.36876 -10.22972 -10.07489 -9.48924 -9.20965 -8.82438 -8.58579 -8.47040 -8.13595 -7.40348 -5.82284 -3.78108 1.00998 1.65895 2.04307 2.73290 3.42485 3.48500 3.52227 4.42896 4.61529 4.98650 5.03724 5.25582 5.40499 5.48121 5.51798 5.53949 5.56882 5.64610 5.78727 5.82422 5.84599 5.95022 5.97290 6.00628 6.07967 6.12144 6.23386 6.27959 6.31423 6.37556 6.46090 6.50863 6.57564 6.65499 6.80569 7.09755 7.13024 7.60790 7.76944 7.98945 8.10290 8.19524 8.67673 9.26601 9.82091 11.29892 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.005241 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.250927 B = 5340.937200 C = 6609.383344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.053 3.947 4 N -0.510 5.510 5 C 0.066 3.934 6 C -0.051 4.051 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.132 4.132 10 C -0.228 4.228 11 S 0.102 5.898 12 C 0.087 3.913 13 H 0.060 0.940 14 C -0.182 4.182 15 C 0.021 3.979 16 C -0.481 4.481 17 H 0.057 0.943 18 C 0.050 3.950 19 N -0.905 5.905 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.276 1.276 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.013 0.987 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 17.113 2.261 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.075 4.075 4 N -0.233 5.233 5 C -0.063 4.063 6 C -0.090 4.090 7 C -0.272 4.272 8 C -0.183 4.183 9 C -0.163 4.163 10 C -0.364 4.364 11 S 0.366 5.634 12 C -0.021 4.021 13 H 0.078 0.922 14 C -0.241 4.241 15 C -0.016 4.016 16 C -0.519 4.519 17 H 0.075 0.925 18 C -0.148 4.148 19 N -0.546 5.546 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.177 0.823 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.789 15.780 3.288 16.558 hybrid contribution -0.677 1.210 -0.415 1.447 sum -4.466 16.990 2.873 17.801 Atomic orbital electron populations 1.21777 0.97245 1.01137 1.00518 1.21850 0.93352 0.96533 1.04806 1.22232 0.88765 0.97468 0.99000 1.62169 1.03950 1.18396 1.38810 1.22052 1.00167 0.90092 0.94037 1.20262 1.00703 0.89102 0.98933 1.24659 0.98353 0.99715 1.04490 1.20096 1.02317 0.91090 1.04749 1.20124 0.95356 0.99546 1.01259 1.25589 1.02424 0.99183 1.09164 1.84516 1.21816 1.00098 1.57012 1.21935 0.94988 1.00099 0.85037 0.92185 1.22565 1.01955 0.99415 1.00151 1.19460 0.98349 0.87058 0.96690 1.21112 1.29331 0.91306 1.10192 0.92504 1.24960 0.96602 0.96669 0.96615 1.69954 1.46553 0.98833 1.39280 0.86707 0.80648 0.77369 0.83890 1.20991 1.21722 1.20156 0.92940 0.93511 0.93728 0.90115 0.90282 0.92194 0.95124 0.90941 0.95842 0.90072 0.89538 0.84609 0.84731 0.82291 0.94546 0.92739 0.91763 0.94444 0.96925 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.13 -2.23 4.38 -26.73 -0.12 -2.35 16 3 C 0.05 0.86 4.32 -3.82 -0.02 0.84 16 4 N -0.51 -9.38 3.95 -226.65 -0.90 -10.27 16 5 C 0.07 1.04 4.85 -3.82 -0.02 1.02 16 6 C -0.05 -0.71 5.66 -27.88 -0.16 -0.87 16 7 C -0.15 -2.01 5.76 -36.00 -0.21 -2.21 16 8 C -0.15 -1.79 10.05 -41.21 -0.41 -2.20 16 9 C -0.13 -1.39 10.18 -41.21 -0.42 -1.81 16 10 C -0.23 -2.42 11.23 29.04 0.33 -2.09 16 11 S 0.10 1.27 23.33 -107.50 -2.51 -1.24 16 12 C 0.09 1.75 2.26 -67.71 -0.15 1.59 16 13 H 0.06 1.24 7.52 -51.93 -0.39 0.85 16 14 C -0.18 -3.11 7.84 37.15 0.29 -2.82 16 15 C 0.02 0.53 4.33 -27.88 -0.12 0.41 16 16 C -0.48 -13.30 8.75 -34.44 -0.30 -13.60 16 17 H 0.06 1.58 7.69 -52.49 -0.40 1.17 16 18 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 19 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 20 Si 0.88 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.57 4.25 -51.93 -0.22 1.35 16 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.06 0.88 6.02 -51.93 -0.31 0.57 16 30 H 0.03 0.47 5.73 -51.93 -0.30 0.18 16 31 H 0.07 1.23 7.79 -51.93 -0.40 0.83 16 32 H 0.02 0.35 8.12 -51.92 -0.42 -0.07 16 33 H 0.08 1.06 6.33 -51.93 -0.33 0.73 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.04 0.56 7.91 -51.93 -0.41 0.15 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.08 4.85 -51.93 -0.25 0.82 16 41 H 0.04 0.96 4.57 -51.93 -0.24 0.73 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -29.44 346.66 -10.54 -39.98 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.04 Total: 0.03 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -1.04 Total: -24.46 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.16 Total: -36.65 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.51 Total: -1.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.44 -10.54 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299209119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.585 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds