Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46819 * 2 1 4 4 N 1.46895 * 109.46907 * 173.48994 * 3 2 1 5 5 C 1.46901 * 111.00035 * 192.06129 * 4 3 2 6 6 C 1.53002 * 109.47390 * 66.04321 * 5 4 3 7 7 C 1.50705 * 109.47122 * 180.02562 * 6 5 4 8 8 C 1.33387 * 125.20311 * 90.00117 * 7 6 5 9 9 C 1.38416 * 114.91845 * 179.97438 * 8 7 6 10 10 C 1.33391 * 114.92685 * 0.02562 * 9 8 7 11 11 S 1.75886 * 125.20043 * 269.69641 * 7 6 5 12 12 C 1.46902 * 111.00105 * 68.10471 * 4 3 2 13 13 H 1.09000 * 109.46869 * 151.16710 * 12 4 3 14 14 C 1.52995 * 109.47208 * 31.17173 * 12 4 3 15 15 C 1.53000 * 109.47247 * 271.16777 * 12 4 3 16 16 C 1.50705 * 109.47228 * 299.22945 * 15 12 4 17 17 H 1.07999 * 119.99879 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00080 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47555 * 89.99620 * 20 18 16 22 22 H 1.48497 * 109.46850 * 210.00087 * 20 18 16 23 23 H 1.48506 * 109.46971 * 329.99546 * 20 18 16 24 24 H 1.09000 * 109.46727 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47610 * 299.99680 * 1 2 3 26 26 H 1.09004 * 109.47164 * 60.00459 * 1 2 3 27 27 H 1.08997 * 109.47610 * 240.00320 * 2 1 3 28 28 H 1.09001 * 109.47461 * 119.99948 * 2 1 3 29 29 H 1.09000 * 109.47033 * 53.49508 * 3 2 1 30 30 H 1.08995 * 109.47091 * 293.49422 * 3 2 1 31 31 H 1.09005 * 109.47550 * 186.04932 * 5 4 3 32 32 H 1.09008 * 109.47053 * 306.04425 * 5 4 3 33 33 H 1.08994 * 109.46943 * 300.00496 * 6 5 4 34 34 H 1.08995 * 109.46573 * 60.00546 * 6 5 4 35 35 H 1.07994 * 122.53861 * 359.95921 * 8 7 6 36 36 H 1.08004 * 122.53778 * 180.02562 * 9 8 7 37 37 H 1.07997 * 125.20671 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47613 * 59.99265 * 14 12 4 39 39 H 1.08991 * 109.47531 * 180.02562 * 14 12 4 40 40 H 1.09003 * 109.46554 * 300.00007 * 14 12 4 41 41 H 1.09002 * 109.46978 * 59.22680 * 15 12 4 42 42 H 1.08998 * 109.46948 * 179.22936 * 15 12 4 43 43 H 0.96992 * 119.99888 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5005 1.4456 0.1570 5 6 3.9960 2.7977 0.4473 6 6 3.4817 3.2463 1.8167 7 6 3.9896 4.6337 2.1142 8 6 3.3631 5.7669 1.7941 9 6 4.0225 6.9242 2.1705 10 6 5.1849 6.7309 2.7957 11 16 5.4954 5.0060 2.9434 12 6 4.1589 0.8875 -1.0317 13 1 5.1463 1.3353 -1.1439 14 6 3.3166 1.1928 -2.2719 15 6 4.3011 -0.6275 -0.8720 16 6 5.1466 -0.9278 0.3388 17 1 5.5433 -0.1190 0.9346 18 6 5.4138 -2.2351 0.6860 19 7 4.9304 -3.2200 -0.0392 20 14 6.4613 -2.6074 2.1872 21 1 5.5882 -2.7295 3.3822 22 1 7.1930 -3.8823 1.9764 23 1 7.4355 -1.5063 2.3964 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5846 1.9889 0.8260 30 1 1.7748 1.9217 -0.9424 31 1 5.0860 2.7920 0.4526 32 1 3.6400 3.4873 -0.3182 33 1 2.3918 3.2520 1.8114 34 1 3.8377 2.5568 2.5821 35 1 2.4134 5.7804 1.2801 36 1 3.6260 7.9092 1.9728 37 1 5.8335 7.5137 3.1603 38 1 3.2152 2.2721 -2.3856 39 1 3.8049 0.7784 -3.1538 40 1 2.3292 0.7451 -2.1595 41 1 3.3146 -1.0737 -0.7460 42 1 4.7773 -1.0433 -1.7599 43 1 5.1180 -4.1397 0.2053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299209119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = 15.436280 kcal Electronic energy + Delta-G solvation = -20381.770828 eV Core-core repulsion = 17552.951768 eV Total energy + Delta-G solvation = -2828.819060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11137 -38.68393 -35.27438 -34.59020 -33.67032 -31.41731 -29.23975 -28.21265 -26.81865 -25.25142 -24.33199 -22.64148 -21.96911 -20.39559 -20.04189 -18.32951 -18.11167 -17.12399 -16.54561 -16.28962 -16.00844 -15.64775 -15.01379 -14.45657 -14.34371 -14.01689 -13.89904 -13.74980 -13.51618 -13.47844 -13.20217 -13.17502 -12.90342 -12.73655 -12.62565 -12.48316 -12.34355 -12.31479 -11.82334 -11.65538 -11.59582 -11.48486 -11.19552 -11.07299 -10.82438 -10.29143 -9.51512 -9.40025 -8.81899 -8.04275 -6.05889 0.12608 0.75746 1.17482 1.41061 1.41785 1.51774 1.88959 2.49720 3.09523 3.31730 3.96278 4.04409 4.16924 4.21309 4.28497 4.32886 4.38675 4.53112 4.57062 4.58208 4.62841 4.70599 4.74912 4.78505 4.91252 4.94430 5.01518 5.04450 5.14838 5.23825 5.29141 5.31618 5.33793 5.43000 5.47330 5.56004 5.66363 5.67299 5.85562 6.02746 6.40150 6.53860 6.61490 7.07352 7.57707 9.07760 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.005241 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.250927 B = 5340.937200 C = 6609.383344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.534 5.534 5 C 0.073 3.927 6 C -0.039 4.039 7 C -0.177 4.177 8 C -0.143 4.143 9 C -0.138 4.138 10 C -0.216 4.216 11 S 0.058 5.942 12 C 0.095 3.905 13 H 0.048 0.952 14 C -0.172 4.172 15 C 0.025 3.975 16 C -0.486 4.486 17 H 0.051 0.949 18 C -0.003 4.003 19 N -0.939 5.939 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.270 1.270 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.184 0.816 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.027 0.973 42 H -0.019 1.019 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 19.883 2.656 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C -0.070 4.070 4 N -0.258 5.258 5 C -0.055 4.055 6 C -0.078 4.078 7 C -0.294 4.294 8 C -0.173 4.173 9 C -0.168 4.168 10 C -0.352 4.352 11 S 0.320 5.680 12 C -0.013 4.013 13 H 0.067 0.933 14 C -0.231 4.231 15 C -0.012 4.012 16 C -0.525 4.525 17 H 0.069 0.931 18 C -0.198 4.198 19 N -0.582 5.582 20 Si 0.773 3.227 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.195 1.195 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.171 0.829 36 H 0.182 0.818 37 H 0.202 0.798 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.045 0.955 42 H -0.001 1.001 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.901 18.567 3.688 19.554 hybrid contribution -0.332 0.407 -0.539 0.753 sum -5.233 18.974 3.149 19.933 Atomic orbital electron populations 1.21700 0.94265 1.01595 1.02284 1.21723 0.95959 0.96897 1.01560 1.22254 0.87328 0.96694 1.00700 1.61996 1.05337 1.20300 1.38140 1.21981 0.99066 0.88886 0.95613 1.20065 1.01288 0.89505 0.96988 1.24525 0.98909 0.99504 1.06493 1.20411 1.02620 0.90876 1.03431 1.20455 0.95115 1.00476 1.00743 1.25913 1.02785 0.98014 1.08439 1.84677 1.22637 1.02703 1.57933 1.21599 0.95599 0.96633 0.87455 0.93321 1.22428 1.01324 1.01022 0.98281 1.19360 0.96830 0.90766 0.94215 1.21417 1.29121 0.91158 1.10767 0.93095 1.25718 0.97988 0.96704 0.99410 1.70076 1.48049 0.99088 1.40988 0.85734 0.79167 0.77267 0.80555 1.20512 1.21315 1.19480 0.93250 0.91861 0.91733 0.92674 0.94213 0.90160 0.93331 0.92857 0.94291 0.88749 0.91734 0.82861 0.81841 0.79830 0.92019 0.92890 0.91414 0.95489 1.00061 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.12 -4.32 4.38 30.60 0.13 -4.18 16 3 C 0.06 1.77 4.32 86.31 0.37 2.14 16 4 N -0.53 -19.51 3.95 -870.97 -3.44 -22.96 16 5 C 0.07 2.26 4.85 86.30 0.42 2.67 16 6 C -0.04 -1.06 5.66 29.85 0.17 -0.89 16 7 C -0.18 -4.33 5.76 24.59 0.14 -4.19 16 8 C -0.14 -2.92 10.05 21.21 0.21 -2.70 16 9 C -0.14 -2.43 10.18 21.21 0.22 -2.22 16 10 C -0.22 -4.02 11.23 66.72 0.75 -3.27 16 11 S 0.06 1.39 23.33 -56.49 -1.32 0.07 16 12 C 0.10 3.87 2.26 44.91 0.10 3.98 16 13 H 0.05 2.05 7.52 -2.39 -0.02 2.04 16 14 C -0.17 -5.68 7.84 71.98 0.56 -5.12 16 15 C 0.03 1.31 4.33 29.85 0.13 1.44 16 16 C -0.49 -27.78 8.75 25.60 0.22 -27.55 16 17 H 0.05 2.91 7.69 -2.91 -0.02 2.89 16 18 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 19 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 20 Si 0.95 46.38 29.54 68.60 2.03 48.41 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.05 2.19 4.25 -2.39 -0.01 2.18 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 2.15 6.02 -2.39 -0.01 2.14 16 30 H 0.05 1.35 5.73 -2.39 -0.01 1.33 16 31 H 0.05 1.83 7.79 -2.38 -0.02 1.81 16 32 H 0.04 1.08 8.12 -2.38 -0.02 1.06 16 33 H 0.09 2.25 6.33 -2.39 -0.02 2.24 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.06 1.73 7.91 -2.39 -0.02 1.71 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 2.19 4.85 -2.39 -0.01 2.18 16 41 H 0.03 1.46 4.57 -2.39 -0.01 1.45 16 42 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 43 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -65.30 346.66 3.13 -62.17 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.97 Total: 12.61 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.61 Total: -42.57 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -3.16 Total: -80.69 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.32 Total: 0.07 kcal Total: -65.30 3.13 -62.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299209119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.603 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds