Wall clock time and date at job start Tue Mar 31 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47318 * 2 1 4 4 N 1.46905 * 109.47056 * 186.25444 * 3 2 1 5 5 C 1.46901 * 110.99849 * 163.24650 * 4 3 2 6 6 C 1.53006 * 109.47109 * 288.86746 * 5 4 3 7 7 C 1.50695 * 109.47236 * 185.49767 * 6 5 4 8 8 C 1.33387 * 125.20550 * 90.00092 * 7 6 5 9 9 C 1.38425 * 114.92190 * 179.97438 * 8 7 6 10 10 C 1.33386 * 114.92253 * 359.97438 * 9 8 7 11 11 S 1.75885 * 109.59209 * 359.76230 * 10 9 8 12 12 C 1.46897 * 111.00199 * 287.19348 * 4 3 2 13 13 H 1.08995 * 109.47813 * 209.07995 * 12 4 3 14 14 C 1.53004 * 109.47364 * 329.08578 * 12 4 3 15 15 C 1.53005 * 109.46763 * 89.08009 * 12 4 3 16 16 C 1.50704 * 109.47022 * 62.28813 * 15 12 4 17 17 H 1.07993 * 119.99922 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99979 * 179.97438 * 16 15 12 19 19 N 1.31508 * 119.99953 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99991 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.46972 * 90.00053 * 20 18 16 22 22 H 1.48500 * 109.47080 * 210.00105 * 20 18 16 23 23 H 1.48500 * 109.46990 * 329.99972 * 20 18 16 24 24 H 1.08997 * 109.47190 * 300.00028 * 1 2 3 25 25 H 1.08996 * 109.47185 * 59.99907 * 1 2 3 26 26 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47041 * 239.99732 * 2 1 3 28 28 H 1.09006 * 109.47178 * 120.00131 * 2 1 3 29 29 H 1.08999 * 109.47235 * 66.25371 * 3 2 1 30 30 H 1.08998 * 109.47058 * 306.25289 * 3 2 1 31 31 H 1.09003 * 109.47401 * 48.86379 * 5 4 3 32 32 H 1.09002 * 109.47238 * 168.86877 * 5 4 3 33 33 H 1.08993 * 109.46871 * 305.50019 * 6 5 4 34 34 H 1.09004 * 109.46890 * 65.49609 * 6 5 4 35 35 H 1.07996 * 122.53975 * 359.95296 * 8 7 6 36 36 H 1.08000 * 122.54075 * 180.02562 * 9 8 7 37 37 H 1.07997 * 125.20569 * 180.02562 * 10 9 8 38 38 H 1.09000 * 109.47054 * 190.04644 * 14 12 4 39 39 H 1.09001 * 109.46685 * 310.04344 * 14 12 4 40 40 H 1.08996 * 109.46999 * 70.04110 * 14 12 4 41 41 H 1.09003 * 109.47483 * 182.28931 * 15 12 4 42 42 H 1.08998 * 109.47301 * 302.28833 * 15 12 4 43 43 H 0.97003 * 120.00325 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5012 1.4451 -0.1509 5 6 3.9868 2.7728 -0.5502 6 6 3.5825 3.0489 -1.9999 7 6 4.1942 4.3495 -2.4530 8 6 5.3888 4.4767 -3.0325 9 6 5.7414 5.7737 -3.3635 10 6 4.8328 6.6998 -3.0533 11 16 3.4384 5.9309 -2.3063 12 6 4.1587 0.9934 1.0826 13 1 5.1400 1.4608 1.1636 14 6 3.3049 1.3876 2.2895 15 6 4.3198 -0.5277 1.0469 16 6 5.2070 -0.9119 -0.1091 17 1 5.6154 -0.1477 -0.7536 18 6 5.4981 -2.2391 -0.3433 19 7 6.2726 -2.5743 -1.3519 20 14 4.7922 -3.5611 0.7719 21 1 3.4818 -4.0113 0.2379 22 1 5.7270 -4.7136 0.8265 23 1 4.6068 -3.0090 2.1380 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7709 1.9230 0.9406 30 1 1.5881 1.9876 -0.8287 31 1 3.5489 3.5305 0.0996 32 1 5.0729 2.8036 -0.4638 33 1 3.9378 2.2389 -2.6367 34 1 2.4966 3.1149 -2.0679 35 1 6.0324 3.6319 -3.2283 36 1 6.6806 6.0174 -3.8378 37 1 4.9357 7.7590 -3.2370 38 1 3.8695 1.2152 3.2058 39 1 3.0408 2.4427 2.2186 40 1 2.3963 0.7857 2.3038 41 1 4.7707 -0.8674 1.9794 42 1 3.3421 -0.9939 0.9252 43 1 6.4772 -3.5081 -1.5169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299209127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:01 Heat of formation + Delta-G solvation = 32.153203 kcal Electronic energy + Delta-G solvation = -20393.522269 eV Core-core repulsion = 17565.428109 eV Total energy + Delta-G solvation = -2828.094160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.73736 -37.69830 -33.70748 -33.14621 -32.07063 -30.22626 -27.95049 -27.08545 -25.66562 -23.65115 -22.70687 -21.43282 -20.45199 -19.15220 -18.92278 -17.05858 -16.55629 -15.87960 -15.36589 -14.85527 -14.48066 -14.14625 -13.51889 -13.34871 -12.98906 -12.91456 -12.66981 -12.52147 -12.27443 -12.16999 -12.01726 -11.92353 -11.67879 -11.43250 -11.24320 -11.17669 -10.77814 -10.70167 -10.44461 -10.37657 -10.22443 -9.75639 -9.60228 -9.50617 -8.92218 -8.54751 -8.44668 -8.34582 -7.47446 -5.86407 -3.78657 1.05124 1.67676 2.04064 2.82109 3.38406 3.46152 3.48300 4.37794 4.58433 5.01374 5.11562 5.23119 5.35071 5.42927 5.51461 5.52011 5.59944 5.65845 5.68175 5.76317 5.76871 5.84344 5.89610 5.95051 6.06930 6.11691 6.21732 6.26364 6.33616 6.38431 6.40771 6.48027 6.51864 6.59806 6.63597 6.88218 6.93394 7.21984 7.45717 7.83439 7.87930 8.02059 8.77751 9.25402 9.77418 11.27894 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.004724 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.898425 B = 5925.339353 C = 6808.021397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.051 3.949 4 N -0.509 5.509 5 C 0.067 3.933 6 C -0.048 4.048 7 C -0.152 4.152 8 C -0.146 4.146 9 C -0.127 4.127 10 C -0.225 4.225 11 S 0.075 5.925 12 C 0.096 3.904 13 H 0.067 0.933 14 C -0.181 4.181 15 C -0.013 4.013 16 C -0.482 4.482 17 H 0.076 0.924 18 C 0.061 3.939 19 N -0.910 5.910 20 Si 0.869 3.131 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.269 1.269 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.012 0.988 42 H 0.028 0.972 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 15.585 0.068 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.077 4.077 4 N -0.232 5.232 5 C -0.062 4.062 6 C -0.087 4.087 7 C -0.270 4.270 8 C -0.175 4.175 9 C -0.158 4.158 10 C -0.361 4.361 11 S 0.338 5.662 12 C -0.011 4.011 13 H 0.085 0.915 14 C -0.239 4.239 15 C -0.051 4.051 16 C -0.520 4.520 17 H 0.094 0.906 18 C -0.138 4.138 19 N -0.551 5.551 20 Si 0.698 3.302 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.194 1.194 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.045 0.955 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.844 15.642 0.177 17.970 hybrid contribution 0.873 -0.644 0.535 1.209 sum -7.971 14.998 0.711 17.000 Atomic orbital electron populations 1.21773 0.97033 1.01136 1.00793 1.21803 0.93564 0.96909 1.04320 1.22260 0.88734 0.97268 0.99438 1.62067 1.04023 1.23267 1.33863 1.22049 1.00570 0.89992 0.93556 1.20230 0.99551 0.91303 0.97663 1.24610 0.98774 0.97989 1.05599 1.20255 0.96856 0.98115 1.02281 1.20200 1.00666 0.92327 1.02596 1.25504 0.98365 1.03181 1.09000 1.84197 1.20989 0.99816 1.61236 1.21719 0.95491 0.99036 0.84892 0.91490 1.22534 1.01409 0.99894 1.00078 1.19913 0.97690 0.90247 0.97225 1.20999 1.27061 0.92885 1.11064 0.90609 1.24976 0.95297 0.98405 0.95109 1.69906 1.38308 1.17139 1.29783 0.86948 0.79059 0.82092 0.82134 1.20540 1.21800 1.19355 0.93587 0.93270 0.93006 0.90342 0.90742 0.94664 0.92166 0.95962 0.90633 0.88321 0.91245 0.83822 0.84494 0.82329 0.92832 0.93914 0.92233 0.96970 0.95459 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.15 0.37 -1.61 16 2 C -0.13 -2.13 4.79 -26.74 -0.13 -2.25 16 3 C 0.05 0.80 4.32 -3.82 -0.02 0.78 16 4 N -0.51 -9.19 3.95 -226.64 -0.89 -10.09 16 5 C 0.07 1.07 4.90 -3.82 -0.02 1.05 16 6 C -0.05 -0.69 5.66 -27.88 -0.16 -0.85 16 7 C -0.15 -2.05 5.76 -36.01 -0.21 -2.26 16 8 C -0.15 -1.92 10.05 -41.21 -0.41 -2.34 16 9 C -0.13 -1.46 10.18 -41.21 -0.42 -1.88 16 10 C -0.23 -2.43 11.23 29.04 0.33 -2.10 16 11 S 0.08 0.88 23.33 -107.50 -2.51 -1.63 16 12 C 0.10 1.86 2.24 -67.71 -0.15 1.70 16 13 H 0.07 1.34 7.43 -51.93 -0.39 0.95 16 14 C -0.18 -2.88 7.77 37.16 0.29 -2.59 16 15 C -0.01 -0.31 3.41 -27.88 -0.10 -0.41 16 16 C -0.48 -13.38 9.33 -34.44 -0.32 -13.70 16 17 H 0.08 2.30 7.97 -52.49 -0.42 1.88 16 18 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 19 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 20 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.07 1.34 4.35 -51.93 -0.23 1.11 16 29 H 0.04 0.52 5.33 -51.93 -0.28 0.25 16 30 H 0.06 0.87 6.31 -51.93 -0.33 0.55 16 31 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 32 H 0.08 1.28 7.64 -51.93 -0.40 0.89 16 33 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 0.94 6.69 -51.93 -0.35 0.59 16 35 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 40 H 0.06 0.93 5.73 -51.93 -0.30 0.63 16 41 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 42 H 0.03 0.63 4.04 -51.93 -0.21 0.42 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -30.00 344.00 -10.20 -40.20 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.04 Total: 1.40 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -1.05 Total: -24.78 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.12 Total: -37.52 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.00 -10.20 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299209127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.351 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds