Wall clock time and date at job start Tue Mar 31 2020 05:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.46755 * 2 1 4 4 C 1.38234 * 120.00067 * 90.00174 * 3 2 1 5 5 C 1.38237 * 120.00454 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99802 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.00263 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47311 * 89.99694 * 7 6 5 9 9 C 1.39681 * 120.00352 * 180.02562 * 8 7 6 10 10 C 1.39340 * 119.94878 * 359.72768 * 9 8 7 11 11 C 1.38476 * 120.41914 * 179.71970 * 10 9 8 12 12 C 1.37690 * 120.32662 * 0.55707 * 11 10 9 13 13 C 1.40741 * 119.89321 * 359.72587 * 12 11 10 14 14 C 1.41413 * 120.20680 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99942 * 204.44026 * 14 13 12 16 16 C 1.39928 * 119.99989 * 24.44363 * 14 13 12 17 17 N 1.30823 * 120.00201 * 17.90208 * 16 14 13 18 18 Si 1.86801 * 119.99593 * 197.90527 * 16 14 13 19 19 H 1.48498 * 109.47208 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46767 * 120.00033 * 18 16 14 21 21 H 1.48501 * 109.47000 * 239.99491 * 18 16 14 22 22 C 1.38277 * 119.94962 * 180.02562 * 9 8 7 23 23 C 1.38236 * 119.99549 * 0.25466 * 6 5 4 24 24 C 1.38229 * 120.00595 * 359.48969 * 23 6 5 25 25 H 1.08996 * 109.47638 * 299.99959 * 1 2 3 26 26 H 1.09001 * 109.47285 * 59.99907 * 1 2 3 27 27 H 1.09008 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46744 * 240.00076 * 2 1 3 29 29 H 1.08992 * 109.47354 * 120.00325 * 2 1 3 30 30 H 1.08002 * 120.00128 * 0.02562 * 4 3 2 31 31 H 1.07993 * 120.00291 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47184 * 330.00360 * 7 6 5 33 33 H 1.08992 * 109.47334 * 210.00353 * 7 6 5 34 34 H 0.97000 * 119.99555 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.78556 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.83273 * 180.25997 * 11 10 9 37 37 H 1.07999 * 120.05365 * 179.74895 * 12 11 10 38 38 H 0.96995 * 120.00426 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.16553 * 359.97190 * 22 9 8 40 40 H 1.08004 * 119.99407 * 179.72618 * 23 6 5 41 41 H 1.07997 * 120.00568 * 180.24843 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0724 1.1971 5 6 2.7238 3.3756 1.1972 6 6 2.9542 4.0273 0.0001 7 6 3.4564 5.4481 0.0000 8 7 4.9214 5.4483 0.0001 9 6 5.6198 6.6580 0.0006 10 6 4.9220 7.8640 -0.0046 11 6 5.6044 9.0689 0.0017 12 6 6.9812 9.0882 0.0017 13 6 7.6996 7.8779 0.0010 14 6 9.1137 7.8900 0.0015 15 1 9.6610 7.0433 -0.3859 16 6 9.8037 8.9987 0.5041 17 7 9.1896 9.8553 1.2790 18 14 11.6019 9.2557 0.0682 19 1 12.0590 8.1544 -0.8168 20 1 11.7600 10.5538 -0.6356 21 1 12.4160 9.2637 1.3102 22 6 7.0026 6.6568 0.0001 23 6 2.7182 3.3776 -1.1971 24 6 2.2621 2.0727 -1.1972 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0831 1.5632 2.1325 31 1 2.9042 3.8845 2.1325 32 1 3.0931 5.9619 0.8901 33 1 3.0930 5.9619 -0.8898 34 1 5.4064 4.6082 -0.0003 35 1 3.8420 7.8590 -0.0095 36 1 5.0540 9.9982 0.0018 37 1 7.5089 10.0304 0.0025 38 1 9.6680 10.6237 1.6276 39 1 7.5445 5.7226 -0.0003 40 1 2.8940 3.8883 -2.1324 41 1 2.0816 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313479377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:54 Heat of formation + Delta-G solvation = 27.137011 kcal Electronic energy + Delta-G solvation = -20063.558270 eV Core-core repulsion = 17099.802640 eV Total energy + Delta-G solvation = -2963.755630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.65114 -37.74681 -35.56018 -34.07805 -32.86759 -30.98568 -30.30378 -29.69416 -27.58118 -25.29775 -25.04045 -22.94392 -22.77776 -20.94077 -20.48548 -19.95603 -17.31541 -16.43329 -15.77315 -15.54372 -15.37734 -14.67093 -14.56379 -14.18495 -14.03295 -13.87297 -13.51282 -13.00858 -12.96791 -12.92782 -12.54512 -12.15763 -11.94847 -11.77500 -11.56364 -11.43383 -11.10991 -11.06758 -10.91520 -10.82199 -10.54740 -10.36462 -9.77510 -9.29297 -9.17828 -8.97198 -8.69817 -8.64478 -7.35275 -6.68257 -6.17628 -4.27717 1.21422 1.35708 2.87027 3.11999 3.17834 3.25245 3.40071 3.61447 3.99709 4.48956 4.57027 4.65252 4.74986 4.90474 4.95245 4.95751 5.10131 5.29632 5.37688 5.42248 5.62165 5.69765 5.76314 5.83255 5.88688 5.91708 6.05763 6.06968 6.34373 6.36032 6.51654 6.58041 6.65690 6.94382 7.07341 7.08402 7.15057 7.37903 7.43580 7.81751 7.95256 8.17890 8.28385 8.54409 8.67130 8.82513 9.03476 9.15496 10.27908 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035911 B = 0.002754 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.523999 B =10165.116332 C =10556.091412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.099 4.099 6 C -0.099 4.099 7 C 0.176 3.824 8 N -0.758 5.758 9 C 0.225 3.775 10 C -0.302 4.302 11 C -0.075 4.075 12 C -0.200 4.200 13 C 0.141 3.859 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.905 3.095 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.276 1.276 22 C -0.289 4.289 23 C -0.099 4.099 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.389 0.611 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.278 0.722 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 -13.887 -1.759 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.118 4.118 6 C -0.099 4.099 7 C 0.051 3.949 8 N -0.392 5.392 9 C 0.126 3.874 10 C -0.325 4.325 11 C -0.094 4.094 12 C -0.220 4.220 13 C 0.138 3.862 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.729 3.271 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.313 4.313 23 C -0.118 4.118 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.289 -13.582 -1.614 19.070 hybrid contribution 0.977 -0.080 -0.040 0.981 sum -12.312 -13.662 -1.653 18.465 Atomic orbital electron populations 1.21748 0.94782 1.01569 1.02267 1.20537 0.96129 0.92803 1.02763 1.19896 0.99143 0.96118 0.93291 1.20999 1.00592 0.94924 0.97443 1.21126 0.98144 0.94608 0.97880 1.20069 1.00005 0.96575 0.93259 1.19944 0.82695 0.91120 1.01119 1.44435 1.03019 1.05868 1.85891 1.17475 0.90869 0.84523 0.94498 1.19859 0.96586 0.91540 1.24553 1.20437 0.94707 0.95186 0.99064 1.21174 0.92194 0.98632 1.09998 1.17347 0.92933 0.90279 0.85671 1.19573 0.91540 1.01875 1.36383 0.90631 1.25893 1.00580 0.94924 0.92643 1.69867 1.38356 1.11031 1.22494 0.86325 0.82267 0.79249 0.79209 1.18473 1.19766 1.20105 1.20396 0.90780 0.97319 1.22776 1.21114 0.98238 0.94594 0.97838 1.20994 1.00656 0.94899 0.97431 0.92544 0.92557 0.92502 0.91121 0.91114 0.86242 0.85857 0.92479 0.92486 0.77843 0.89705 0.89660 0.86773 0.91118 0.89353 0.85884 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 5 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 6 C -0.10 -1.31 5.25 -104.63 -0.55 -1.86 16 7 C 0.18 2.72 5.03 -5.20 -0.03 2.70 16 8 N -0.76 -14.08 5.72 -59.86 -0.34 -14.42 16 9 C 0.22 5.17 6.64 -83.86 -0.56 4.61 16 10 C -0.30 -7.01 9.32 -39.08 -0.36 -7.38 16 11 C -0.07 -1.83 10.01 -39.69 -0.40 -2.23 16 12 C -0.20 -5.40 8.70 -38.84 -0.34 -5.73 16 13 C 0.14 3.89 5.57 -106.85 -0.60 3.30 16 14 C -0.46 -12.70 9.05 -37.74 -0.34 -13.05 16 15 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 16 C 0.08 1.99 5.14 -17.35 -0.09 1.90 16 17 N -0.79 -21.05 10.96 55.55 0.61 -20.45 16 18 Si 0.90 19.10 29.60 -169.99 -5.03 14.07 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.29 -7.35 9.63 -38.67 -0.37 -7.73 16 23 C -0.10 -1.21 9.70 -39.59 -0.38 -1.59 16 24 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 33 H 0.06 0.88 7.87 -51.93 -0.41 0.48 16 34 H 0.39 6.83 8.47 -40.82 -0.35 6.49 16 35 H 0.08 1.77 6.70 -52.49 -0.35 1.42 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.11 3.17 6.15 -52.49 -0.32 2.85 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -28.88 344.08 -11.12 -40.00 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.03 Total: 10.52 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: -5.51 Total: -34.91 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.27 Total: -34.87 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.88 -11.12 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313479377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.134 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds