Wall clock time and date at job start Tue Mar 31 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47618 * 2 1 4 4 C 1.53000 * 109.47026 * 120.00242 * 2 1 3 5 5 N 1.46503 * 109.47175 * 294.99783 * 4 2 1 6 6 C 1.39686 * 120.00138 * 180.27285 * 5 4 2 7 7 C 1.39341 * 119.94999 * 359.45438 * 6 5 4 8 8 C 1.38478 * 120.42130 * 179.71857 * 7 6 5 9 9 C 1.37686 * 120.32413 * 0.55632 * 8 7 6 10 10 C 1.40749 * 119.89405 * 359.72178 * 9 8 7 11 11 C 1.41414 * 120.20599 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99570 * 204.45250 * 11 10 9 13 13 C 1.39925 * 120.00186 * 24.44563 * 11 10 9 14 14 N 1.30823 * 119.99926 * 17.89841 * 13 11 10 15 15 Si 1.86801 * 119.99840 * 197.89880 * 13 11 10 16 16 H 1.48492 * 109.47403 * 89.99974 * 15 13 11 17 17 H 1.48503 * 109.46945 * 210.00110 * 15 13 11 18 18 H 1.48501 * 109.47131 * 329.99860 * 15 13 11 19 19 C 1.38274 * 119.95355 * 179.72403 * 6 5 4 20 20 C 1.50698 * 109.47264 * 240.00141 * 2 1 3 21 21 C 1.38246 * 120.00086 * 299.72782 * 20 2 1 22 22 C 1.38232 * 119.99917 * 179.81100 * 21 20 2 23 23 C 1.38235 * 119.99816 * 0.39445 * 22 21 20 24 24 C 1.38227 * 120.00579 * 359.86186 * 23 22 21 25 25 C 1.38235 * 119.99970 * 359.95178 * 24 23 22 26 26 H 1.09003 * 109.47382 * 59.99695 * 1 2 3 27 27 H 1.08999 * 109.47611 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47265 * 300.00131 * 1 2 3 29 29 H 1.09001 * 109.47378 * 175.00029 * 4 2 1 30 30 H 1.09002 * 109.47306 * 55.00099 * 4 2 1 31 31 H 0.96994 * 119.99756 * 0.02562 * 5 4 2 32 32 H 1.08000 * 119.78592 * 0.02562 * 7 6 5 33 33 H 1.08003 * 119.83699 * 180.27973 * 8 7 6 34 34 H 1.08005 * 120.05328 * 179.74557 * 9 8 7 35 35 H 0.97009 * 119.99924 * 180.02562 * 14 13 11 36 36 H 1.08007 * 120.15930 * 359.97438 * 19 6 5 37 37 H 1.07998 * 119.99625 * 359.97438 * 21 20 2 38 38 H 1.08003 * 119.99447 * 180.23254 * 22 21 20 39 39 H 1.08004 * 119.99269 * 179.83841 * 23 22 21 40 40 H 1.07998 * 120.00583 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.00646 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 0.0353 2.4424 6 6 2.0133 -0.4268 3.7102 7 6 2.7322 -1.6134 3.8395 8 6 3.1001 -2.0775 5.0912 9 6 2.7494 -1.3766 6.2233 10 6 2.0183 -0.1794 6.1087 11 6 1.6551 0.5461 7.2669 12 1 0.8011 1.2069 7.2444 13 6 2.4019 0.4076 8.4421 14 7 3.6088 -0.0948 8.3947 15 14 1.6754 0.9403 10.0786 16 1 0.9557 -0.2024 10.6960 17 1 2.7661 1.3853 10.9829 18 1 0.7271 2.0615 9.8577 19 6 1.6520 0.2911 4.8354 20 6 2.0323 -0.7104 -1.2305 21 6 1.7030 -2.0355 -1.4464 22 6 2.1606 -2.6860 -2.5771 23 6 2.9542 -2.0137 -3.4876 24 6 3.2878 -0.6902 -3.2691 25 6 2.8271 -0.0386 -2.1404 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.1262 -0.7995 1.2056 30 1 1.6053 -1.7199 1.2951 31 1 1.1482 0.8590 2.3518 32 1 3.0084 -2.1722 2.9575 33 1 3.6612 -2.9961 5.1802 34 1 3.0351 -1.7448 7.1976 35 1 4.1265 -0.1911 9.2095 36 1 1.0913 1.2089 4.7366 37 1 1.0861 -2.5618 -0.7331 38 1 1.9002 -3.7202 -2.7476 39 1 3.3138 -2.5227 -4.3697 40 1 3.9082 -0.1651 -3.9803 41 1 3.0874 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313481167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:19 Heat of formation + Delta-G solvation = 30.576711 kcal Electronic energy + Delta-G solvation = -20390.344702 eV Core-core repulsion = 17426.738229 eV Total energy + Delta-G solvation = -2963.606473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66948 -37.85065 -36.06407 -33.93747 -32.50867 -31.02876 -29.72814 -29.55919 -27.77098 -25.46569 -25.07152 -23.21058 -22.49072 -20.91088 -20.27201 -19.63968 -17.44995 -16.83522 -15.65895 -15.57501 -15.27648 -14.88522 -14.57029 -14.21547 -14.18720 -13.62240 -13.44747 -13.10090 -12.90342 -12.59787 -12.50560 -12.16717 -12.03611 -11.74626 -11.47032 -11.25745 -11.10477 -11.03378 -10.84260 -10.68672 -10.50265 -10.34019 -9.73574 -9.27489 -9.17274 -9.03323 -8.80561 -8.68217 -7.34910 -6.67805 -6.16783 -4.27598 1.23969 1.28791 2.88578 3.11829 3.15397 3.26166 3.41105 3.66138 3.99284 4.20790 4.66298 4.75228 4.76325 4.88266 4.98203 5.04785 5.14796 5.34618 5.38523 5.44471 5.76322 5.79470 5.85092 5.90690 5.94291 6.05930 6.16001 6.19452 6.35409 6.37621 6.39827 6.57843 6.59438 6.88787 7.07224 7.09764 7.15360 7.38338 7.43839 7.82594 7.95447 8.18211 8.28912 8.54654 8.67752 8.82786 9.03611 9.16030 10.28339 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.002906 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.266224 B = 9633.366139 C = 9935.283848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 H 0.081 0.919 4 C 0.147 3.853 5 N -0.762 5.762 6 C 0.225 3.775 7 C -0.301 4.301 8 C -0.075 4.075 9 C -0.200 4.200 10 C 0.141 3.859 11 C -0.465 4.465 12 H 0.075 0.925 13 C 0.077 3.923 14 N -0.792 5.792 15 Si 0.906 3.094 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.289 4.289 20 C -0.068 4.068 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.387 0.613 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.278 0.722 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -1.576 -17.873 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 H 0.099 0.901 4 C 0.022 3.978 5 N -0.396 5.396 6 C 0.126 3.874 7 C -0.324 4.324 8 C -0.094 4.094 9 C -0.220 4.220 10 C 0.138 3.862 11 C -0.495 4.495 12 H 0.093 0.907 13 C -0.140 4.140 14 N -0.418 5.418 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.313 4.313 20 C -0.069 4.069 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.220 0.780 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.159 -1.771 -17.825 18.042 hybrid contribution -0.271 0.515 0.672 0.889 sum -2.430 -1.256 -17.152 17.369 Atomic orbital electron populations 1.21826 0.93856 1.02376 1.01789 1.20380 0.96497 0.99525 0.91937 0.90053 1.21057 0.98652 0.94683 0.83414 1.44421 1.64459 1.28121 1.02632 1.17459 0.93617 0.92854 0.83458 1.19864 1.15519 1.00713 0.96308 1.20439 0.98371 0.97709 0.92908 1.21174 1.06842 0.96883 0.97097 1.17336 0.87802 0.89990 0.91070 1.19548 1.12091 1.23353 0.94500 0.90667 1.25887 0.93836 0.93356 1.00933 1.69867 1.07811 1.34061 1.30027 0.86360 0.79603 0.79792 0.81187 1.19342 1.20429 1.18723 1.20386 1.16773 1.02749 0.91408 1.19792 0.97164 0.94245 0.95682 1.21076 1.00118 0.94291 0.97517 1.21146 0.98134 0.99849 0.94596 1.21123 0.99005 0.94924 0.99533 1.21116 1.00120 0.95006 0.97613 1.21099 0.97896 0.99996 0.94443 0.92781 0.92339 0.91813 0.93235 0.93101 0.77968 0.89767 0.89711 0.86800 0.91074 0.89372 0.85897 0.86160 0.86356 0.86240 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.88 37.15 0.33 -1.21 16 2 C -0.06 -0.76 2.60 -91.78 -0.24 -1.00 16 3 H 0.08 0.93 7.88 -51.93 -0.41 0.53 16 4 C 0.15 2.23 4.03 -4.04 -0.02 2.21 16 5 N -0.76 -13.71 5.46 -58.68 -0.32 -14.03 16 6 C 0.22 5.14 6.64 -83.86 -0.56 4.58 16 7 C -0.30 -7.03 9.32 -39.08 -0.36 -7.39 16 8 C -0.08 -1.85 10.01 -39.69 -0.40 -2.25 16 9 C -0.20 -5.40 8.70 -38.84 -0.34 -5.74 16 10 C 0.14 3.89 5.57 -106.85 -0.60 3.29 16 11 C -0.47 -12.69 9.05 -37.74 -0.34 -13.03 16 12 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 13 C 0.08 2.00 5.14 -17.35 -0.09 1.91 16 14 N -0.79 -21.07 10.96 55.55 0.61 -20.46 16 15 Si 0.91 19.08 29.60 -169.99 -5.03 14.05 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 C -0.29 -7.30 9.63 -38.68 -0.37 -7.67 16 20 C -0.07 -0.78 4.78 -104.62 -0.50 -1.28 16 21 C -0.11 -1.23 8.76 -39.58 -0.35 -1.58 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 23 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 24 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 25 C -0.12 -1.23 9.67 -39.58 -0.38 -1.61 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.64 7.40 -51.93 -0.38 0.25 16 28 H 0.06 0.72 7.18 -51.93 -0.37 0.35 16 29 H 0.05 0.81 7.95 -51.93 -0.41 0.40 16 30 H 0.05 0.79 7.35 -51.93 -0.38 0.41 16 31 H 0.39 6.30 7.66 -40.82 -0.31 5.99 16 32 H 0.08 1.79 6.70 -52.49 -0.35 1.44 16 33 H 0.08 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.11 3.17 6.15 -52.48 -0.32 2.85 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 37 H 0.12 1.29 7.16 -52.49 -0.38 0.91 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.12 1.12 7.95 -52.48 -0.42 0.70 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -29.12 338.28 -10.88 -39.99 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.83 Total: 10.85 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: -5.40 Total: -35.50 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.29 Total: -34.49 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.12 -10.88 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313481167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.567 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds