Wall clock time and date at job start Tue Mar 31 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47618 * 2 1 4 4 C 1.53000 * 109.47026 * 120.00242 * 2 1 3 5 5 N 1.46503 * 109.47175 * 294.99783 * 4 2 1 6 6 C 1.39686 * 120.00138 * 180.27285 * 5 4 2 7 7 C 1.39341 * 119.94999 * 359.45438 * 6 5 4 8 8 C 1.38478 * 120.42130 * 179.71857 * 7 6 5 9 9 C 1.37686 * 120.32413 * 0.55632 * 8 7 6 10 10 C 1.40749 * 119.89405 * 359.72178 * 9 8 7 11 11 C 1.41414 * 120.20599 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99570 * 204.45250 * 11 10 9 13 13 C 1.39925 * 120.00186 * 24.44563 * 11 10 9 14 14 N 1.30823 * 119.99926 * 17.89841 * 13 11 10 15 15 Si 1.86801 * 119.99840 * 197.89880 * 13 11 10 16 16 H 1.48492 * 109.47403 * 89.99974 * 15 13 11 17 17 H 1.48503 * 109.46945 * 210.00110 * 15 13 11 18 18 H 1.48501 * 109.47131 * 329.99860 * 15 13 11 19 19 C 1.38274 * 119.95355 * 179.72403 * 6 5 4 20 20 C 1.50698 * 109.47264 * 240.00141 * 2 1 3 21 21 C 1.38246 * 120.00086 * 299.72782 * 20 2 1 22 22 C 1.38232 * 119.99917 * 179.81100 * 21 20 2 23 23 C 1.38235 * 119.99816 * 0.39445 * 22 21 20 24 24 C 1.38227 * 120.00579 * 359.86186 * 23 22 21 25 25 C 1.38235 * 119.99970 * 359.95178 * 24 23 22 26 26 H 1.09003 * 109.47382 * 59.99695 * 1 2 3 27 27 H 1.08999 * 109.47611 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47265 * 300.00131 * 1 2 3 29 29 H 1.09001 * 109.47378 * 175.00029 * 4 2 1 30 30 H 1.09002 * 109.47306 * 55.00099 * 4 2 1 31 31 H 0.96994 * 119.99756 * 0.02562 * 5 4 2 32 32 H 1.08000 * 119.78592 * 0.02562 * 7 6 5 33 33 H 1.08003 * 119.83699 * 180.27973 * 8 7 6 34 34 H 1.08005 * 120.05328 * 179.74557 * 9 8 7 35 35 H 0.97009 * 119.99924 * 180.02562 * 14 13 11 36 36 H 1.08007 * 120.15930 * 359.97438 * 19 6 5 37 37 H 1.07998 * 119.99625 * 359.97438 * 21 20 2 38 38 H 1.08003 * 119.99447 * 180.23254 * 22 21 20 39 39 H 1.08004 * 119.99269 * 179.83841 * 23 22 21 40 40 H 1.07998 * 120.00583 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.00646 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 0.0353 2.4424 6 6 2.0133 -0.4268 3.7102 7 6 2.7322 -1.6134 3.8395 8 6 3.1001 -2.0775 5.0912 9 6 2.7494 -1.3766 6.2233 10 6 2.0183 -0.1794 6.1087 11 6 1.6551 0.5461 7.2669 12 1 0.8011 1.2069 7.2444 13 6 2.4019 0.4076 8.4421 14 7 3.6088 -0.0948 8.3947 15 14 1.6754 0.9403 10.0786 16 1 0.9557 -0.2024 10.6960 17 1 2.7661 1.3853 10.9829 18 1 0.7271 2.0615 9.8577 19 6 1.6520 0.2911 4.8354 20 6 2.0323 -0.7104 -1.2305 21 6 1.7030 -2.0355 -1.4464 22 6 2.1606 -2.6860 -2.5771 23 6 2.9542 -2.0137 -3.4876 24 6 3.2878 -0.6902 -3.2691 25 6 2.8271 -0.0386 -2.1404 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.1262 -0.7995 1.2056 30 1 1.6053 -1.7199 1.2951 31 1 1.1482 0.8590 2.3518 32 1 3.0084 -2.1722 2.9575 33 1 3.6612 -2.9961 5.1802 34 1 3.0351 -1.7448 7.1976 35 1 4.1265 -0.1911 9.2095 36 1 1.0913 1.2089 4.7366 37 1 1.0861 -2.5618 -0.7331 38 1 1.9002 -3.7202 -2.7476 39 1 3.3138 -2.5227 -4.3697 40 1 3.9082 -0.1651 -3.9803 41 1 3.0874 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313481167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:19 Heat of formation + Delta-G solvation = 17.347509 kcal Electronic energy + Delta-G solvation = -20390.918363 eV Core-core repulsion = 17426.738229 eV Total energy + Delta-G solvation = -2964.180135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53464 -39.56392 -37.41974 -35.59658 -34.07420 -31.77399 -31.68141 -30.59437 -29.24369 -27.16927 -26.64032 -24.16449 -23.32741 -22.69599 -21.95498 -20.82087 -19.21338 -17.79277 -17.27286 -17.00937 -16.47007 -16.32245 -15.90902 -15.73675 -15.23287 -14.82062 -14.58084 -14.37977 -14.18335 -13.94370 -13.88148 -13.65661 -13.41443 -13.00894 -12.90915 -12.77301 -12.58073 -12.26392 -12.16313 -12.04240 -11.79129 -11.62374 -11.53563 -11.19473 -11.04954 -10.45660 -9.78836 -9.59888 -9.34106 -8.60532 -7.94306 -6.32222 0.46360 0.53189 1.04741 1.34597 1.39609 1.52750 1.60111 2.23130 2.74169 2.80813 2.94463 3.76424 3.82459 3.86384 4.09573 4.18023 4.21440 4.32248 4.41482 4.49436 4.64060 4.67539 4.70184 4.74618 4.86771 4.95425 5.08104 5.13724 5.15154 5.17150 5.20279 5.25154 5.30202 5.42212 5.59135 5.62149 5.65754 5.75753 5.94406 6.02387 6.15084 6.20259 6.30882 6.62436 6.89071 7.02448 7.05071 7.25514 8.37932 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.002906 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.266224 B = 9633.366139 C = 9935.283848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 H 0.086 0.914 4 C 0.148 3.852 5 N -0.750 5.750 6 C 0.233 3.767 7 C -0.305 4.305 8 C -0.076 4.076 9 C -0.232 4.232 10 C 0.113 3.887 11 C -0.502 4.502 12 H 0.073 0.927 13 C 0.035 3.965 14 N -0.824 5.824 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.267 1.267 18 H -0.258 1.258 19 C -0.310 4.310 20 C -0.084 4.084 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.128 4.128 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.396 0.604 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 -1.544 -19.447 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 H 0.104 0.896 4 C 0.024 3.976 5 N -0.383 5.383 6 C 0.132 3.868 7 C -0.328 4.328 8 C -0.094 4.094 9 C -0.253 4.253 10 C 0.110 3.890 11 C -0.532 4.532 12 H 0.091 0.909 13 C -0.180 4.180 14 N -0.450 5.450 15 Si 0.804 3.196 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.182 1.182 19 C -0.335 4.335 20 C -0.084 4.084 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.322 -1.732 -19.453 19.668 hybrid contribution -0.179 0.458 0.959 1.078 sum -2.501 -1.274 -18.494 18.706 Atomic orbital electron populations 1.21801 0.93156 1.02445 1.02147 1.20239 0.96978 0.99323 0.90568 0.89572 1.21172 0.98093 0.94822 0.83532 1.44469 1.63499 1.28468 1.01893 1.17526 0.92223 0.92245 0.84791 1.20141 1.15101 1.00966 0.96624 1.20718 0.97803 0.98165 0.92762 1.21110 1.09095 0.97883 0.97202 1.17708 0.88510 0.90536 0.92281 1.19806 1.12882 1.24541 0.95922 0.90906 1.26777 0.93821 0.93008 1.04364 1.69925 1.08936 1.34640 1.31478 0.85203 0.78916 0.79478 0.76051 1.18694 1.19186 1.18221 1.20509 1.17765 1.03507 0.91683 1.19781 0.98233 0.94614 0.95795 1.21202 1.00634 0.94393 0.98219 1.21428 0.97979 1.00810 0.94265 1.21475 0.98293 0.94990 1.00068 1.21435 0.99985 0.95330 0.97606 1.21313 0.97835 1.00657 0.94778 0.91409 0.92440 0.92420 0.94233 0.93170 0.76865 0.87457 0.87531 0.88551 0.90271 0.88988 0.85979 0.84435 0.84032 0.84120 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.88 71.98 0.64 -2.17 16 2 C -0.05 -1.16 2.60 -11.54 -0.03 -1.19 16 3 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 4 C 0.15 4.29 4.03 86.38 0.35 4.64 16 5 N -0.75 -26.26 5.46 -339.57 -1.85 -28.12 16 6 C 0.23 10.63 6.64 38.16 0.25 10.88 16 7 C -0.31 -14.06 9.32 22.59 0.21 -13.85 16 8 C -0.08 -3.74 10.01 22.20 0.22 -3.52 16 9 C -0.23 -12.98 8.70 22.75 0.20 -12.78 16 10 C 0.11 6.42 5.57 -21.31 -0.12 6.30 16 11 C -0.50 -28.31 9.05 23.46 0.21 -28.09 16 12 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 13 C 0.04 1.84 5.14 85.25 0.44 2.28 16 14 N -0.82 -44.89 10.96 21.82 0.24 -44.65 16 15 Si 0.98 39.48 29.60 68.60 2.03 41.51 16 16 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 19 C -0.31 -15.98 9.63 22.85 0.22 -15.76 16 20 C -0.08 -1.78 4.78 -19.86 -0.09 -1.87 16 21 C -0.13 -2.60 8.76 22.27 0.20 -2.40 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 24 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 25 C -0.13 -2.46 9.67 22.27 0.22 -2.24 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.17 7.40 -2.39 -0.02 1.16 16 28 H 0.06 1.23 7.18 -2.39 -0.02 1.21 16 29 H 0.04 1.25 7.95 -2.39 -0.02 1.23 16 30 H 0.05 1.49 7.35 -2.39 -0.02 1.47 16 31 H 0.40 12.49 7.66 -92.71 -0.71 11.78 16 32 H 0.11 4.39 6.70 -2.91 -0.02 4.37 16 33 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 34 H 0.10 5.61 6.15 -2.91 -0.02 5.60 16 35 H 0.29 14.06 8.30 -92.70 -0.77 13.30 16 36 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.12 2.43 7.16 -2.91 -0.02 2.41 16 38 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 41 H 0.13 2.16 7.95 -2.91 -0.02 2.13 16 Total: -1.00 -63.70 338.28 4.31 -59.40 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.31 Total: 37.40 kcal Atomic # 6 Polarization: -69.12 SS G_CDS: 3.58 Total: -65.54 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.61 Total: -72.77 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -63.70 4.31 -59.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313481167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.743 kcal (2) G-P(sol) polarization free energy of solvation -63.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds