Wall clock time and date at job start Tue Mar 31 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46861 * 2 1 4 4 C 1.52991 * 109.47184 * 240.00197 * 2 1 3 5 5 N 1.46502 * 109.47478 * 64.99534 * 4 2 1 6 6 C 1.39685 * 120.00183 * 180.02562 * 5 4 2 7 7 C 1.39340 * 119.95110 * 359.72827 * 6 5 4 8 8 C 1.38472 * 120.42362 * 179.72072 * 7 6 5 9 9 C 1.37696 * 120.32481 * 0.55495 * 8 7 6 10 10 C 1.40748 * 119.89196 * 359.72225 * 9 8 7 11 11 C 1.41403 * 120.20786 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00058 * 24.41767 * 11 10 9 13 13 C 1.39923 * 120.00389 * 204.41081 * 11 10 9 14 14 N 1.30838 * 119.99517 * 17.87749 * 13 11 10 15 15 Si 1.86802 * 120.00596 * 197.87607 * 13 11 10 16 16 H 1.48496 * 109.46939 * 90.00116 * 15 13 11 17 17 H 1.48499 * 109.47209 * 209.99981 * 15 13 11 18 18 H 1.48502 * 109.46943 * 330.00526 * 15 13 11 19 19 C 1.38272 * 119.95277 * 179.97438 * 6 5 4 20 20 C 1.50694 * 109.47505 * 119.99674 * 2 1 3 21 21 C 1.38237 * 119.99947 * 59.72309 * 20 2 1 22 22 C 1.38235 * 119.99928 * 179.78856 * 21 20 2 23 23 C 1.38234 * 120.00116 * 0.44468 * 22 21 20 24 24 C 1.38236 * 119.99992 * 359.81415 * 23 22 21 25 25 C 1.38235 * 120.00227 * 240.00810 * 20 2 1 26 26 H 1.09006 * 109.46781 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47425 * 299.99974 * 1 2 3 28 28 H 1.08997 * 109.47367 * 60.00600 * 1 2 3 29 29 H 1.09003 * 109.47142 * 304.99822 * 4 2 1 30 30 H 1.09002 * 109.47592 * 184.99849 * 4 2 1 31 31 H 0.96996 * 119.99714 * 0.02562 * 5 4 2 32 32 H 1.08003 * 119.78644 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.84110 * 180.27763 * 8 7 6 34 34 H 1.07996 * 120.05386 * 179.74759 * 9 8 7 35 35 H 0.97003 * 119.99544 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.16120 * 359.97438 * 19 6 5 37 37 H 1.08003 * 120.00158 * 0.02562 * 21 20 2 38 38 H 1.08001 * 119.99758 * 180.28471 * 22 21 20 39 39 H 1.08000 * 119.99915 * 179.83165 * 23 22 21 40 40 H 1.07993 * 120.00262 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.99842 * 359.97253 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.0080 -0.4299 -3.7105 7 6 2.7364 -1.6108 -3.8393 8 6 3.0891 -2.0841 -5.0919 9 6 2.7335 -1.3862 -6.2243 10 6 2.0027 -0.1888 -6.1097 11 6 1.6335 0.5331 -7.2682 12 1 1.5442 0.0236 -8.2163 13 6 1.3836 1.9074 -7.1863 14 7 1.8159 2.5907 -6.1577 15 14 0.4327 2.7666 -8.5454 16 1 -1.0180 2.7360 -8.2301 17 1 0.8865 4.1765 -8.6519 18 1 0.6738 2.0701 -9.8346 19 6 1.6412 0.2846 -4.8360 20 6 2.0324 -0.7103 1.2304 21 6 1.6938 -2.0321 1.4522 22 6 2.1583 -2.6849 2.5786 23 6 2.9538 -2.0134 3.4880 24 6 3.2880 -0.6900 3.2690 25 6 2.8271 -0.0384 2.1404 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2056 31 1 1.1488 0.8594 -2.3517 32 1 3.0241 -2.1627 -2.9566 33 1 3.6499 -3.0028 -5.1809 34 1 3.0144 -1.7572 -7.1988 35 1 1.6430 3.5435 -6.1011 36 1 1.0798 1.2019 -4.7373 37 1 1.0695 -2.5558 0.7434 38 1 1.8975 -3.7190 2.7495 39 1 3.3144 -2.5227 4.3695 40 1 3.9092 -0.1652 3.9797 41 1 3.0882 0.9955 1.9693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313481168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:22 Heat of formation + Delta-G solvation = 30.606237 kcal Electronic energy + Delta-G solvation = -20577.368439 eV Core-core repulsion = 17613.763246 eV Total energy + Delta-G solvation = -2963.605193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.63593 -37.82578 -36.01390 -33.79993 -32.72588 -31.00225 -29.60117 -29.37737 -27.88661 -25.44022 -25.05384 -23.16247 -22.45217 -21.08686 -20.04784 -19.63840 -17.30209 -16.84723 -15.90068 -15.53359 -15.04893 -14.78791 -14.64817 -14.20459 -14.14588 -13.58806 -13.42000 -13.08892 -12.81985 -12.56746 -12.46995 -12.20127 -12.04742 -11.71169 -11.44628 -11.22708 -11.05479 -10.98746 -10.83702 -10.62807 -10.50772 -10.34369 -9.58963 -9.40533 -9.20073 -9.00769 -8.77393 -8.71179 -7.27017 -6.69488 -6.11845 -4.27554 1.26833 1.31358 2.89804 3.11853 3.15618 3.26950 3.37891 3.69009 4.00356 4.27408 4.70074 4.75837 4.81252 4.91102 5.01759 5.08507 5.20018 5.39238 5.42111 5.47325 5.81037 5.83015 5.87065 5.93522 5.97403 6.11300 6.20344 6.24159 6.31594 6.39591 6.42164 6.61737 6.63719 6.91046 6.92803 7.15393 7.17775 7.41846 7.48446 7.85373 8.00494 8.15014 8.21389 8.53028 8.75388 8.87962 9.05182 9.16233 10.29222 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.003341 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.720234 B = 8377.809434 C = 8976.993270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 H 0.082 0.918 4 C 0.148 3.852 5 N -0.760 5.760 6 C 0.216 3.784 7 C -0.299 4.299 8 C -0.066 4.066 9 C -0.258 4.258 10 C 0.138 3.862 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.078 3.922 14 N -0.793 5.793 15 Si 0.904 3.096 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.263 1.263 19 C -0.231 4.231 20 C -0.067 4.067 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.389 0.611 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.277 0.723 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -3.544 16.335 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.394 5.394 6 C 0.117 3.883 7 C -0.321 4.321 8 C -0.085 4.085 9 C -0.278 4.278 10 C 0.135 3.865 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.139 4.139 14 N -0.419 5.419 15 Si 0.729 3.271 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.187 1.187 19 C -0.255 4.255 20 C -0.068 4.068 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.033 -3.450 16.529 16.917 hybrid contribution -0.437 0.763 -0.480 1.002 sum -1.470 -2.687 16.050 16.340 Atomic orbital electron populations 1.21827 0.93860 1.02312 1.01843 1.20384 0.96498 0.99586 0.91909 0.89997 1.21038 0.98541 0.94616 0.83546 1.44411 1.64573 1.27962 1.02458 1.17639 0.93861 0.92790 0.83996 1.19888 1.15391 1.00800 0.96052 1.20283 0.98201 0.97222 0.92821 1.20862 1.09737 1.01196 0.96035 1.17320 0.86741 0.89967 0.92441 1.19552 1.41469 0.92691 0.95793 0.90613 1.25871 0.93645 0.97932 0.96498 1.69878 1.34386 1.08603 1.28998 0.86386 0.80500 0.78377 0.81829 1.19425 1.20488 1.18711 1.20715 1.10974 1.03306 0.90490 1.19800 0.97056 0.94258 0.95657 1.21074 1.00072 0.94340 0.97546 1.21141 0.98137 0.99803 0.94671 1.21119 0.99084 0.94932 0.99513 1.21118 1.00117 0.95004 0.97620 1.21107 0.97927 1.00003 0.94400 0.92389 0.92808 0.91742 0.93229 0.93349 0.77753 0.89726 0.89693 0.89429 0.91256 0.86563 0.85911 0.86191 0.86380 0.86254 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.88 37.16 0.33 -1.32 16 2 C -0.07 -0.82 2.60 -91.78 -0.24 -1.05 16 3 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 4 C 0.15 2.33 4.04 -4.04 -0.02 2.31 16 5 N -0.76 -14.47 5.46 -58.69 -0.32 -14.79 16 6 C 0.22 5.09 6.64 -83.86 -0.56 4.53 16 7 C -0.30 -6.94 9.32 -39.09 -0.36 -7.30 16 8 C -0.07 -1.57 10.02 -39.69 -0.40 -1.97 16 9 C -0.26 -6.62 9.79 -38.83 -0.38 -7.00 16 10 C 0.14 3.81 5.57 -106.85 -0.60 3.21 16 11 C -0.47 -12.68 9.05 -37.75 -0.34 -13.02 16 12 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 13 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 14 N -0.79 -20.82 10.96 55.55 0.61 -20.21 16 15 Si 0.90 19.04 29.60 -169.99 -5.03 14.01 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 19 C -0.23 -6.09 8.53 -38.68 -0.33 -6.42 16 20 C -0.07 -0.80 4.78 -104.63 -0.50 -1.30 16 21 C -0.11 -1.28 8.76 -39.58 -0.35 -1.62 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.29 9.67 -39.58 -0.38 -1.67 16 26 H 0.06 0.66 7.37 -51.93 -0.38 0.28 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.80 7.18 -51.93 -0.37 0.43 16 29 H 0.05 0.79 7.39 -51.93 -0.38 0.41 16 30 H 0.05 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.39 6.99 7.66 -40.82 -0.31 6.68 16 32 H 0.08 1.79 6.70 -52.48 -0.35 1.44 16 33 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 37 H 0.12 1.32 7.16 -52.48 -0.38 0.95 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.19 7.95 -52.49 -0.42 0.77 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -28.85 338.29 -10.88 -39.73 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.83 Total: 11.70 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -5.40 Total: -35.55 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.29 Total: -34.99 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.85 -10.88 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313481168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.333 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds