Wall clock time and date at job start Tue Mar 31 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46861 * 2 1 4 4 C 1.52991 * 109.47184 * 240.00197 * 2 1 3 5 5 N 1.46502 * 109.47478 * 64.99534 * 4 2 1 6 6 C 1.39685 * 120.00183 * 180.02562 * 5 4 2 7 7 C 1.39340 * 119.95110 * 359.72827 * 6 5 4 8 8 C 1.38472 * 120.42362 * 179.72072 * 7 6 5 9 9 C 1.37696 * 120.32481 * 0.55495 * 8 7 6 10 10 C 1.40748 * 119.89196 * 359.72225 * 9 8 7 11 11 C 1.41403 * 120.20786 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00058 * 24.41767 * 11 10 9 13 13 C 1.39923 * 120.00389 * 204.41081 * 11 10 9 14 14 N 1.30838 * 119.99517 * 17.87749 * 13 11 10 15 15 Si 1.86802 * 120.00596 * 197.87607 * 13 11 10 16 16 H 1.48496 * 109.46939 * 90.00116 * 15 13 11 17 17 H 1.48499 * 109.47209 * 209.99981 * 15 13 11 18 18 H 1.48502 * 109.46943 * 330.00526 * 15 13 11 19 19 C 1.38272 * 119.95277 * 179.97438 * 6 5 4 20 20 C 1.50694 * 109.47505 * 119.99674 * 2 1 3 21 21 C 1.38237 * 119.99947 * 59.72309 * 20 2 1 22 22 C 1.38235 * 119.99928 * 179.78856 * 21 20 2 23 23 C 1.38234 * 120.00116 * 0.44468 * 22 21 20 24 24 C 1.38236 * 119.99992 * 359.81415 * 23 22 21 25 25 C 1.38235 * 120.00227 * 240.00810 * 20 2 1 26 26 H 1.09006 * 109.46781 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47425 * 299.99974 * 1 2 3 28 28 H 1.08997 * 109.47367 * 60.00600 * 1 2 3 29 29 H 1.09003 * 109.47142 * 304.99822 * 4 2 1 30 30 H 1.09002 * 109.47592 * 184.99849 * 4 2 1 31 31 H 0.96996 * 119.99714 * 0.02562 * 5 4 2 32 32 H 1.08003 * 119.78644 * 359.97438 * 7 6 5 33 33 H 1.08000 * 119.84110 * 180.27763 * 8 7 6 34 34 H 1.07996 * 120.05386 * 179.74759 * 9 8 7 35 35 H 0.97003 * 119.99544 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.16120 * 359.97438 * 19 6 5 37 37 H 1.08003 * 120.00158 * 0.02562 * 21 20 2 38 38 H 1.08001 * 119.99758 * 180.28471 * 22 21 20 39 39 H 1.08000 * 119.99915 * 179.83165 * 23 22 21 40 40 H 1.07993 * 120.00262 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.99842 * 359.97253 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.0080 -0.4299 -3.7105 7 6 2.7364 -1.6108 -3.8393 8 6 3.0891 -2.0841 -5.0919 9 6 2.7335 -1.3862 -6.2243 10 6 2.0027 -0.1888 -6.1097 11 6 1.6335 0.5331 -7.2682 12 1 1.5442 0.0236 -8.2163 13 6 1.3836 1.9074 -7.1863 14 7 1.8159 2.5907 -6.1577 15 14 0.4327 2.7666 -8.5454 16 1 -1.0180 2.7360 -8.2301 17 1 0.8865 4.1765 -8.6519 18 1 0.6738 2.0701 -9.8346 19 6 1.6412 0.2846 -4.8360 20 6 2.0324 -0.7103 1.2304 21 6 1.6938 -2.0321 1.4522 22 6 2.1583 -2.6849 2.5786 23 6 2.9538 -2.0134 3.4880 24 6 3.2880 -0.6900 3.2690 25 6 2.8271 -0.0384 2.1404 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2056 31 1 1.1488 0.8594 -2.3517 32 1 3.0241 -2.1627 -2.9566 33 1 3.6499 -3.0028 -5.1809 34 1 3.0144 -1.7572 -7.1988 35 1 1.6430 3.5435 -6.1011 36 1 1.0798 1.2019 -4.7373 37 1 1.0695 -2.5558 0.7434 38 1 1.8975 -3.7190 2.7495 39 1 3.3144 -2.5227 4.3695 40 1 3.9092 -0.1652 3.9797 41 1 3.0882 0.9955 1.9693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313481168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:22 Heat of formation + Delta-G solvation = 17.662031 kcal Electronic energy + Delta-G solvation = -20577.929741 eV Core-core repulsion = 17613.763246 eV Total energy + Delta-G solvation = -2964.166496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53599 -39.55118 -37.37242 -35.53348 -34.27862 -31.77625 -31.34539 -30.66776 -29.34772 -27.16251 -26.62133 -24.15071 -23.31846 -22.88589 -21.69684 -20.87499 -19.09926 -17.92977 -17.43501 -16.67661 -16.49127 -16.40395 -15.89849 -15.74053 -15.22763 -14.78712 -14.58542 -14.34836 -14.19932 -14.01572 -13.83688 -13.67950 -13.38464 -13.01742 -12.86236 -12.76151 -12.59691 -12.27653 -12.14169 -12.05505 -11.75710 -11.60664 -11.47781 -11.29430 -11.05938 -10.48573 -9.79195 -9.60238 -9.25108 -8.61377 -7.90779 -6.31422 0.46074 0.52811 1.08750 1.33617 1.39129 1.52044 1.59121 2.23701 2.75533 2.82764 2.94949 3.75551 3.82352 3.87035 4.09058 4.17707 4.20955 4.32042 4.40228 4.51527 4.63727 4.67078 4.70559 4.78443 4.86235 4.94371 4.99140 5.08203 5.15564 5.20001 5.21003 5.28209 5.31070 5.45259 5.59824 5.62210 5.65262 5.75662 5.96461 6.10898 6.14771 6.22039 6.26076 6.58372 6.94554 7.05046 7.07103 7.25658 8.39075 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.003341 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.720234 B = 8377.809434 C = 8976.993270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 H 0.082 0.918 4 C 0.150 3.850 5 N -0.752 5.752 6 C 0.220 3.780 7 C -0.304 4.304 8 C -0.063 4.063 9 C -0.285 4.285 10 C 0.108 3.892 11 C -0.503 4.503 12 H 0.071 0.929 13 C 0.037 3.963 14 N -0.821 5.821 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.260 1.260 19 C -0.258 4.258 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.130 4.130 24 C -0.125 4.125 25 C -0.129 4.129 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.393 0.607 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.285 0.715 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -3.819 17.999 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 H 0.100 0.900 4 C 0.026 3.974 5 N -0.384 5.384 6 C 0.118 3.882 7 C -0.326 4.326 8 C -0.081 4.081 9 C -0.306 4.306 10 C 0.105 3.895 11 C -0.533 4.533 12 H 0.089 0.911 13 C -0.178 4.178 14 N -0.447 5.447 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.184 1.184 19 C -0.282 4.282 20 C -0.084 4.084 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.227 0.773 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.053 -3.731 18.236 18.644 hybrid contribution -0.365 0.775 -0.835 1.196 sum -1.418 -2.956 17.402 17.708 Atomic orbital electron populations 1.21794 0.93240 1.02468 1.01978 1.20235 0.96929 0.99221 0.90806 0.89973 1.21154 0.98019 0.94764 0.83479 1.44500 1.63708 1.28180 1.02059 1.17760 0.92842 0.92523 0.85044 1.20204 1.14856 1.00694 0.96882 1.20638 0.97354 0.97895 0.92241 1.21026 1.10926 1.01563 0.97097 1.17720 0.87491 0.91041 0.93213 1.19798 1.43714 0.94003 0.95795 0.91054 1.26716 0.93879 0.98027 0.99158 1.69930 1.34811 1.09276 1.30715 0.85241 0.78874 0.77368 0.78389 1.18743 1.19232 1.18407 1.20646 1.12594 1.03629 0.91341 1.19757 0.98227 0.94713 0.95654 1.21198 1.00562 0.94325 0.98304 1.21432 0.97881 1.00812 0.94239 1.21482 0.98296 0.94923 1.00065 1.21433 0.99966 0.95379 0.97529 1.21303 0.97977 1.00582 0.94841 0.92233 0.91421 0.92795 0.93045 0.94251 0.77275 0.87374 0.86474 0.89175 0.90447 0.88121 0.85921 0.84290 0.83916 0.84109 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.88 71.98 0.64 -2.44 16 2 C -0.05 -1.28 2.60 -11.54 -0.03 -1.31 16 3 H 0.08 1.97 7.88 -2.38 -0.02 1.96 16 4 C 0.15 4.61 4.04 86.38 0.35 4.96 16 5 N -0.75 -28.56 5.46 -339.58 -1.85 -30.42 16 6 C 0.22 10.43 6.64 38.16 0.25 10.69 16 7 C -0.30 -13.87 9.32 22.59 0.21 -13.66 16 8 C -0.06 -2.92 10.02 22.20 0.22 -2.70 16 9 C -0.29 -14.98 9.79 22.76 0.22 -14.76 16 10 C 0.11 6.17 5.57 -21.31 -0.12 6.05 16 11 C -0.50 -28.44 9.05 23.46 0.21 -28.23 16 12 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 13 C 0.04 1.93 5.14 85.25 0.44 2.37 16 14 N -0.82 -44.09 10.96 21.82 0.24 -43.85 16 15 Si 0.98 39.45 29.60 68.60 2.03 41.48 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 17 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 C -0.26 -14.03 8.53 22.86 0.20 -13.83 16 20 C -0.08 -1.86 4.78 -19.87 -0.09 -1.96 16 21 C -0.13 -2.67 8.76 22.27 0.20 -2.47 16 22 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 25 C -0.13 -2.64 9.67 22.27 0.22 -2.42 16 26 H 0.06 1.30 7.37 -2.38 -0.02 1.29 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.31 7.18 -2.39 -0.02 1.29 16 29 H 0.05 1.58 7.39 -2.39 -0.02 1.56 16 30 H 0.04 1.30 7.93 -2.39 -0.02 1.28 16 31 H 0.39 14.26 7.66 -92.71 -0.71 13.55 16 32 H 0.11 4.38 6.70 -2.91 -0.02 4.36 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 36 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 37 H 0.12 2.50 7.16 -2.91 -0.02 2.48 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.13 2.33 7.95 -2.91 -0.02 2.30 16 Total: -1.00 -63.05 338.29 4.31 -58.75 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: 0.31 Total: 39.67 kcal Atomic # 6 Polarization: -69.20 SS G_CDS: 3.58 Total: -65.62 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.61 Total: -74.27 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -63.05 4.31 -58.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313481168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.407 kcal (2) G-P(sol) polarization free energy of solvation -63.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds