Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47541 * 2 1 4 4 C 1.46890 * 110.99844 * 72.09722 * 3 2 1 5 5 C 1.53000 * 109.47096 * 200.11405 * 4 3 2 6 6 O 1.42899 * 109.47272 * 64.43873 * 5 4 3 7 7 C 1.42904 * 114.00328 * 184.88536 * 6 5 4 8 8 C 1.50699 * 109.47005 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00064 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99647 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00028 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99807 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47280 * 90.00125 * 12 10 8 14 14 H 1.48498 * 109.47311 * 209.99945 * 12 10 8 15 15 H 1.48504 * 109.47219 * 330.00178 * 12 10 8 16 16 C 1.46900 * 111.00200 * 196.05600 * 3 2 1 17 17 C 1.50702 * 109.47226 * 66.04222 * 16 3 2 18 18 C 1.38270 * 119.98613 * 270.25574 * 17 16 3 19 19 C 1.38227 * 120.04649 * 180.25876 * 18 17 16 20 20 C 1.38221 * 120.02423 * 359.48805 * 19 18 17 21 21 C 1.38437 * 119.97819 * 0.25741 * 20 19 18 22 22 F 1.35094 * 120.02608 * 179.97438 * 21 20 19 23 23 C 1.38177 * 119.98810 * 90.00238 * 17 16 3 24 24 H 1.08999 * 109.47079 * 301.05070 * 1 2 3 25 25 H 1.09010 * 109.47018 * 61.04389 * 1 2 3 26 26 H 1.09001 * 109.47332 * 181.04555 * 1 2 3 27 27 H 1.09006 * 109.47355 * 239.99630 * 2 1 3 28 28 H 1.09000 * 109.47163 * 120.00052 * 2 1 3 29 29 H 1.08996 * 109.47449 * 320.11327 * 4 3 2 30 30 H 1.09006 * 109.47211 * 80.11866 * 4 3 2 31 31 H 1.09003 * 109.47510 * 184.44020 * 5 4 3 32 32 H 1.09001 * 109.47562 * 304.43936 * 5 4 3 33 33 H 1.09001 * 109.46472 * 300.00011 * 7 6 5 34 34 H 1.09001 * 109.46637 * 59.99760 * 7 6 5 35 35 H 0.97001 * 119.99950 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.46743 * 306.04786 * 16 3 2 37 37 H 1.08995 * 109.47168 * 186.04473 * 16 3 2 38 38 H 1.07999 * 119.97876 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.98368 * 179.77025 * 19 18 17 40 40 H 1.08007 * 120.00849 * 180.23644 * 20 19 18 41 41 H 1.08001 * 120.00978 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7978 2.0218 1.3049 5 6 1.8380 3.5427 1.1436 6 8 0.7517 3.9628 0.3157 7 6 0.7599 5.3587 0.0099 8 6 -0.4228 5.6885 -0.8639 9 1 -1.1121 4.9100 -1.1560 10 6 -0.6255 6.9842 -1.2894 11 7 0.2135 7.9322 -0.9331 12 14 -2.0920 7.3931 -2.3718 13 1 -3.2518 7.7555 -1.5181 14 1 -1.7513 8.5370 -3.2554 15 1 -2.4387 6.2120 -3.2026 16 6 3.4378 1.4419 -0.3793 17 6 3.5919 1.0071 -1.8140 18 6 3.7988 -0.3269 -2.1133 19 6 3.9457 -0.7263 -3.4284 20 6 3.8753 0.2060 -4.4464 21 6 3.6629 1.5411 -4.1482 22 9 3.5944 2.4532 -5.1424 23 6 3.5212 1.9408 -2.8300 24 1 -0.3633 0.5301 0.8804 25 1 -0.3633 0.4976 -0.8993 26 1 -0.3634 -1.0275 0.0188 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8244 1.7233 1.6941 30 1 2.5780 1.7093 1.9991 31 1 1.7522 4.0144 2.1226 32 1 2.7810 3.8343 0.6813 33 1 0.7008 5.9334 0.9342 34 1 1.6810 5.6100 -0.5160 35 1 0.0711 8.8437 -1.2328 36 1 4.0132 0.7777 0.2655 37 1 3.8030 2.4628 -0.2678 38 1 3.8495 -1.0567 -1.3189 39 1 4.1110 -1.7680 -3.6609 40 1 3.9863 -0.1070 -5.4742 41 1 3.3558 2.9822 -2.5962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338914135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = -87.181575 kcal Electronic energy + Delta-G solvation = -22057.725841 eV Core-core repulsion = 18658.243760 eV Total energy + Delta-G solvation = -3399.482080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.90501 -40.51300 -38.97675 -37.68918 -34.92171 -33.16905 -32.15084 -31.46311 -29.96393 -28.66309 -26.32629 -24.51852 -23.95371 -23.37388 -22.67347 -21.28264 -18.63485 -18.35375 -17.47650 -17.36993 -17.15110 -16.87047 -16.74379 -16.51525 -16.08298 -15.79995 -15.35231 -14.81492 -14.80386 -14.54355 -14.22183 -13.73565 -13.53545 -13.42981 -13.18981 -12.98429 -12.87219 -12.75826 -12.65990 -12.50870 -12.37368 -12.17577 -11.94081 -11.68654 -11.52345 -11.24432 -10.84979 -10.15990 -9.92217 -9.63974 -9.08391 -8.32709 -6.44127 0.18117 0.27590 1.36816 1.40137 1.52108 2.33726 2.54183 3.00935 3.13044 3.27566 3.29330 3.70518 3.85942 4.09466 4.13207 4.21349 4.25813 4.30437 4.35764 4.44943 4.52809 4.60912 4.67543 4.71233 4.75409 4.80630 4.90687 4.97018 5.05646 5.12970 5.16972 5.20152 5.21902 5.36617 5.44206 5.54826 5.56031 5.96327 5.97830 6.17318 6.27760 6.57941 6.88015 7.28237 8.79744 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.005017 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.073902 B = 5579.622575 C = 6820.366329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 N -0.551 5.551 4 C 0.069 3.931 5 C 0.057 3.943 6 O -0.393 6.393 7 C 0.213 3.787 8 C -0.543 4.543 9 H 0.057 0.943 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.979 3.021 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.268 1.268 16 C 0.093 3.907 17 C -0.051 4.051 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.156 4.156 21 C 0.068 3.932 22 F -0.158 7.158 23 C -0.155 4.155 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.032 0.968 33 H -0.017 1.017 34 H -0.022 1.022 35 H 0.270 0.730 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.153 0.847 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 -21.672 0.070 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.276 5.276 4 C -0.058 4.058 5 C -0.021 4.021 6 O -0.313 6.313 7 C 0.137 3.863 8 C -0.581 4.581 9 H 0.076 0.924 10 C -0.191 4.191 11 N -0.571 5.571 12 Si 0.802 3.198 13 H -0.189 1.189 14 H -0.199 1.199 15 H -0.192 1.192 16 C -0.034 4.034 17 C -0.051 4.051 18 C -0.137 4.137 19 C -0.100 4.100 20 C -0.174 4.174 21 C 0.049 3.951 22 F -0.137 7.137 23 C -0.175 4.175 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.001 0.999 34 H -0.005 1.005 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.176 0.824 39 H 0.189 0.811 40 H 0.171 0.829 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.759 -21.313 -0.377 23.046 hybrid contribution 0.020 1.267 -0.058 1.269 sum 8.779 -20.046 -0.435 21.888 Atomic orbital electron populations 1.21752 0.95591 1.01641 1.01220 1.22229 0.95798 0.87729 1.01975 1.61755 1.17123 1.18681 1.30071 1.22102 1.02622 0.91302 0.89817 1.22624 0.89838 0.96111 0.93492 1.87893 1.47714 1.25676 1.70002 1.19726 0.95407 0.77906 0.93233 1.21357 1.10550 0.94544 1.31621 0.92428 1.25928 1.00216 0.95348 0.97654 1.70068 1.38466 1.01962 1.46569 0.85242 0.78286 0.77979 0.78279 1.18891 1.19861 1.19245 1.21092 0.89047 1.01561 0.91736 1.19686 0.97305 0.93614 0.94535 1.21449 0.99682 0.94443 0.98120 1.21398 0.96716 1.00731 0.91204 1.21435 1.03190 0.90214 1.02607 1.18096 1.04498 0.87901 0.84569 1.91454 1.94168 1.67263 1.60797 1.21094 1.03427 1.00951 0.91993 0.93525 0.94715 0.90289 0.89589 0.92730 0.89913 0.90389 0.93592 0.94950 0.99932 1.00471 0.92110 0.90723 0.91489 0.82392 0.81092 0.82918 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.99 71.98 0.72 -2.81 16 2 C 0.05 1.08 5.52 86.30 0.48 1.55 16 3 N -0.55 -15.62 4.32 -900.82 -3.89 -19.51 16 4 C 0.07 1.94 5.22 86.31 0.45 2.39 16 5 C 0.06 2.15 6.13 71.98 0.44 2.60 16 6 O -0.39 -20.09 10.27 -148.98 -1.53 -21.62 16 7 C 0.21 12.54 5.69 71.24 0.41 12.94 16 8 C -0.54 -33.93 9.43 25.60 0.24 -33.69 16 9 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 10 C 0.01 0.41 5.46 84.66 0.46 0.87 16 11 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 12 Si 0.98 46.43 29.54 68.60 2.03 48.46 16 13 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 16 C 0.09 2.27 4.94 85.56 0.42 2.69 16 17 C -0.05 -1.27 4.94 -19.87 -0.10 -1.37 16 18 C -0.12 -2.07 7.84 22.27 0.17 -1.89 16 19 C -0.08 -1.30 10.04 22.26 0.22 -1.07 16 20 C -0.16 -3.27 10.03 22.31 0.22 -3.05 16 21 C 0.07 2.02 7.30 22.37 0.16 2.18 16 22 F -0.16 -5.31 17.27 44.97 0.78 -4.54 16 23 C -0.16 -4.90 9.68 22.31 0.22 -4.69 16 24 H 0.05 1.22 6.52 -2.39 -0.02 1.20 16 25 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.69 5.10 -2.38 -0.01 1.68 16 28 H 0.05 0.91 8.05 -2.39 -0.02 0.89 16 29 H 0.08 2.36 6.24 -2.39 -0.01 2.34 16 30 H 0.08 1.63 7.99 -2.38 -0.02 1.62 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 1.23 6.69 -2.39 -0.02 1.22 16 33 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 34 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 37 H 0.07 1.89 6.54 -2.39 -0.02 1.87 16 38 H 0.16 1.71 7.71 -2.91 -0.02 1.69 16 39 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.10 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -74.60 342.13 3.20 -71.41 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.01 Total: 6.86 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.52 Total: -23.34 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.61 Total: -77.23 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.53 Total: -21.62 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.60 3.20 -71.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338914135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.775 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds