Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47387 * 2 1 4 4 C 1.53001 * 109.47118 * 305.57342 * 3 2 1 5 5 C 1.52997 * 109.47116 * 293.36430 * 4 3 2 6 6 C 1.53001 * 109.46923 * 65.57277 * 3 2 1 7 7 N 1.46504 * 109.47160 * 66.48929 * 6 3 2 8 8 C 1.46497 * 119.99772 * 83.75423 * 7 6 3 9 9 C 1.50707 * 109.46778 * 94.92266 * 8 7 6 10 10 H 1.07994 * 119.99930 * 355.02551 * 9 8 7 11 11 C 1.37876 * 119.99430 * 175.02302 * 9 8 7 12 12 N 1.31509 * 120.00631 * 5.18899 * 11 9 8 13 13 Si 1.86806 * 119.99656 * 185.18999 * 11 9 8 14 14 H 1.48503 * 109.46956 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47230 * 119.99924 * 13 11 9 16 16 H 1.48505 * 109.46993 * 240.00335 * 13 11 9 17 17 C 1.38536 * 119.99602 * 263.75717 * 7 6 3 18 18 N 1.32454 * 119.19033 * 354.47884 * 17 7 6 19 19 C 1.32304 * 120.76310 * 179.76204 * 18 17 7 20 20 C 1.38782 * 119.16412 * 0.50495 * 19 18 17 21 21 F 1.35105 * 120.74149 * 179.72948 * 20 19 18 22 22 C 1.38776 * 118.51293 * 359.75341 * 20 19 18 23 23 N 1.32292 * 119.16889 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47285 * 186.80863 * 1 2 3 25 25 H 1.09002 * 109.46528 * 306.80866 * 1 2 3 26 26 H 1.09001 * 109.47510 * 66.79910 * 1 2 3 27 27 H 1.09004 * 109.46776 * 240.00050 * 2 1 3 28 28 H 1.08995 * 109.47331 * 120.00350 * 2 1 3 29 29 H 1.08997 * 109.47291 * 185.57140 * 3 2 1 30 30 H 1.08994 * 109.47345 * 53.36917 * 4 3 2 31 31 H 1.09007 * 109.46884 * 173.36800 * 4 3 2 32 32 H 1.08994 * 109.47187 * 185.59447 * 5 4 3 33 33 H 1.08999 * 109.47436 * 305.59588 * 5 4 3 34 34 H 1.08999 * 109.46858 * 65.59905 * 5 4 3 35 35 H 1.09004 * 109.47291 * 306.48772 * 6 3 2 36 36 H 1.09000 * 109.47017 * 186.48664 * 6 3 2 37 37 H 1.08995 * 109.47330 * 334.91852 * 8 7 6 38 38 H 1.09003 * 109.46956 * 214.91442 * 8 7 6 39 39 H 0.97003 * 120.00620 * 179.97438 * 12 11 9 40 40 H 1.07997 * 120.41322 * 180.24189 * 19 18 17 41 41 H 1.08004 * 120.41424 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4189 2.2031 -1.1733 5 6 1.9429 1.6260 -2.4898 6 6 1.6476 2.1221 1.3134 7 7 2.3648 1.4901 2.4236 8 6 3.7305 1.9102 2.7471 9 6 3.6911 2.9514 3.8359 10 1 2.7424 3.3271 4.1898 11 6 4.8663 3.4243 4.3803 12 7 6.0221 3.0441 3.8811 13 14 4.8168 4.6051 5.8269 14 1 3.4043 4.8749 6.1975 15 1 5.5258 4.0010 6.9834 16 1 5.4809 5.8786 5.4493 17 6 1.7515 0.4953 3.1674 18 7 0.4806 0.2044 2.9336 19 6 -0.1345 -0.7432 3.6223 20 6 0.5659 -1.4272 4.6060 21 9 -0.0324 -2.3968 5.3320 22 6 1.8943 -1.0925 4.8275 23 7 2.4490 -0.1382 4.0984 24 1 -0.3634 -1.0204 0.1218 25 1 -0.3632 0.6157 0.8228 26 1 -0.3634 0.4048 -0.9445 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.1254 1.4441 -0.0998 30 1 0.3342 2.1019 -1.1384 31 1 1.6879 3.2573 -1.1061 32 1 1.5793 2.2296 -3.3213 33 1 3.0328 1.6362 -2.4828 34 1 1.5898 0.6010 -2.6033 35 1 0.5737 2.0192 1.4691 36 1 1.9084 3.1795 1.2674 37 1 4.2012 2.3311 1.8586 38 1 4.3043 1.0488 3.0888 39 1 6.8489 3.3771 4.2639 40 1 -1.1698 -0.9784 3.4243 41 1 2.4682 -1.6048 5.5856 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339057768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = 2.335706 kcal Electronic energy + Delta-G solvation = -22876.285841 eV Core-core repulsion = 19512.978273 eV Total energy + Delta-G solvation = -3363.307569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.44751 -40.44172 -37.90052 -35.20164 -33.32093 -32.61400 -30.89431 -30.16704 -28.44111 -26.52308 -24.66785 -24.01056 -23.28416 -22.90009 -20.91809 -18.75045 -17.58914 -17.27927 -16.86812 -16.42195 -15.61035 -15.39675 -14.98206 -14.71197 -14.38822 -14.03126 -13.73003 -13.37293 -13.30523 -12.80894 -12.57773 -12.50250 -12.40686 -11.77664 -11.54957 -11.43600 -11.23158 -11.06122 -11.00326 -10.90115 -10.62223 -10.45957 -10.36765 -10.16214 -10.13143 -9.98742 -9.78566 -9.13614 -8.53546 -8.42152 -7.04204 -6.07581 -4.13241 1.50579 1.51331 3.26468 3.34453 3.36845 3.46712 4.28765 4.41026 4.46282 4.58289 4.94464 5.07901 5.09399 5.15315 5.24935 5.29978 5.39109 5.45341 5.59050 5.63135 5.88059 5.90855 5.93997 5.99079 6.06115 6.09201 6.13342 6.28651 6.35227 6.44132 6.55920 6.62112 6.72917 6.82126 6.97978 7.28483 7.43158 7.70490 7.87424 8.16941 8.21768 8.77823 8.95201 9.51515 10.98414 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.007556 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.050576 B = 3704.542149 C = 5873.648484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.104 4.104 4 C -0.118 4.118 5 C -0.149 4.149 6 C 0.128 3.872 7 N -0.552 5.552 8 C 0.256 3.744 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.284 1.284 17 C 0.568 3.432 18 N -0.554 5.554 19 C 0.168 3.832 20 C -0.112 4.112 21 F -0.142 7.142 22 C 0.174 3.826 23 N -0.522 5.522 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.165 0.835 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 -6.283 -6.785 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.124 4.124 4 C -0.156 4.156 5 C -0.207 4.207 6 C 0.004 3.996 7 N -0.261 5.261 8 C 0.136 3.864 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.210 1.210 17 C 0.213 3.787 18 N -0.278 5.278 19 C -0.002 4.002 20 C -0.141 4.141 21 F -0.121 7.121 22 C 0.002 3.998 23 N -0.243 5.243 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.182 0.818 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.726 -5.299 -7.454 13.350 hybrid contribution -0.332 -0.234 1.585 1.637 sum -10.059 -5.533 -5.868 12.893 Atomic orbital electron populations 1.21903 0.95829 1.01251 1.01816 1.21365 0.96301 0.96126 1.00667 1.21627 1.00698 0.95443 0.94634 1.21546 1.00642 0.99437 0.93989 1.21765 1.01169 1.00737 0.96984 1.21563 0.97553 0.96266 0.84197 1.46973 1.16896 1.33186 1.29077 1.19397 0.74810 0.96100 0.96057 1.21428 0.92651 1.22296 1.19998 0.92614 1.24877 0.95223 0.96635 0.96968 1.69934 0.97341 1.44796 1.41002 0.86498 0.78060 0.80526 0.82656 1.19935 1.20817 1.21000 1.19424 0.84622 0.87737 0.86902 1.67991 1.09891 1.19240 1.30634 1.22849 0.99652 0.88982 0.88756 1.19029 0.95537 0.97842 1.01677 1.91428 1.83548 1.60699 1.76416 1.23081 0.90365 0.91088 0.95303 1.68187 1.38050 1.09455 1.08597 0.94148 0.90226 0.93611 0.93120 0.92824 0.90999 0.91528 0.92026 0.93243 0.92814 0.92853 0.89573 0.90648 0.94795 0.93209 0.92745 0.81808 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.47 37.16 0.31 -1.61 16 2 C -0.11 -1.54 4.90 -26.73 -0.13 -1.67 16 3 C -0.10 -1.54 2.34 -90.62 -0.21 -1.76 16 4 C -0.12 -1.43 5.10 -26.73 -0.14 -1.57 16 5 C -0.15 -1.63 9.57 37.16 0.36 -1.27 16 6 C 0.13 2.20 4.84 -4.04 -0.02 2.18 16 7 N -0.55 -11.48 2.35 -177.38 -0.42 -11.90 16 8 C 0.26 6.34 5.18 -5.19 -0.03 6.32 16 9 C -0.52 -14.34 9.36 -34.44 -0.32 -14.66 16 10 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 11 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 12 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.57 11.43 6.66 -322.72 -2.15 9.28 16 18 N -0.55 -9.49 6.32 -13.87 -0.09 -9.58 16 19 C 0.17 2.48 11.29 -17.15 -0.19 2.29 16 20 C -0.11 -1.71 7.38 -39.18 -0.29 -2.00 16 21 F -0.14 -2.05 17.30 2.25 0.04 -2.01 16 22 C 0.17 2.95 11.29 -17.15 -0.19 2.76 16 23 N -0.52 -10.87 9.16 -13.87 -0.13 -11.00 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.09 4.73 -51.93 -0.25 0.85 16 26 H 0.04 0.52 6.61 -51.93 -0.34 0.17 16 27 H 0.05 0.68 7.02 -51.93 -0.36 0.32 16 28 H 0.05 0.92 6.20 -51.93 -0.32 0.60 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.75 6.11 -51.93 -0.32 0.44 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.57 7.02 -51.93 -0.36 0.20 16 35 H 0.09 1.41 5.27 -51.93 -0.27 1.14 16 36 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 37 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 38 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.17 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -29.08 330.58 -8.95 -38.03 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.96 Total: -0.14 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -3.10 Total: 0.00 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.10 Total: -57.36 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.08 -8.95 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339057768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.369 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds