Wall clock time and date at job start Tue Mar 31 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47387 * 2 1 4 4 C 1.53001 * 109.47118 * 305.57342 * 3 2 1 5 5 C 1.52997 * 109.47116 * 293.36430 * 4 3 2 6 6 C 1.53001 * 109.46923 * 65.57277 * 3 2 1 7 7 N 1.46504 * 109.47160 * 66.48929 * 6 3 2 8 8 C 1.46497 * 119.99772 * 83.75423 * 7 6 3 9 9 C 1.50707 * 109.46778 * 94.92266 * 8 7 6 10 10 H 1.07994 * 119.99930 * 355.02551 * 9 8 7 11 11 C 1.37876 * 119.99430 * 175.02302 * 9 8 7 12 12 N 1.31509 * 120.00631 * 5.18899 * 11 9 8 13 13 Si 1.86806 * 119.99656 * 185.18999 * 11 9 8 14 14 H 1.48503 * 109.46956 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47230 * 119.99924 * 13 11 9 16 16 H 1.48505 * 109.46993 * 240.00335 * 13 11 9 17 17 C 1.38536 * 119.99602 * 263.75717 * 7 6 3 18 18 N 1.32454 * 119.19033 * 354.47884 * 17 7 6 19 19 C 1.32304 * 120.76310 * 179.76204 * 18 17 7 20 20 C 1.38782 * 119.16412 * 0.50495 * 19 18 17 21 21 F 1.35105 * 120.74149 * 179.72948 * 20 19 18 22 22 C 1.38776 * 118.51293 * 359.75341 * 20 19 18 23 23 N 1.32292 * 119.16889 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47285 * 186.80863 * 1 2 3 25 25 H 1.09002 * 109.46528 * 306.80866 * 1 2 3 26 26 H 1.09001 * 109.47510 * 66.79910 * 1 2 3 27 27 H 1.09004 * 109.46776 * 240.00050 * 2 1 3 28 28 H 1.08995 * 109.47331 * 120.00350 * 2 1 3 29 29 H 1.08997 * 109.47291 * 185.57140 * 3 2 1 30 30 H 1.08994 * 109.47345 * 53.36917 * 4 3 2 31 31 H 1.09007 * 109.46884 * 173.36800 * 4 3 2 32 32 H 1.08994 * 109.47187 * 185.59447 * 5 4 3 33 33 H 1.08999 * 109.47436 * 305.59588 * 5 4 3 34 34 H 1.08999 * 109.46858 * 65.59905 * 5 4 3 35 35 H 1.09004 * 109.47291 * 306.48772 * 6 3 2 36 36 H 1.09000 * 109.47017 * 186.48664 * 6 3 2 37 37 H 1.08995 * 109.47330 * 334.91852 * 8 7 6 38 38 H 1.09003 * 109.46956 * 214.91442 * 8 7 6 39 39 H 0.97003 * 120.00620 * 179.97438 * 12 11 9 40 40 H 1.07997 * 120.41322 * 180.24189 * 19 18 17 41 41 H 1.08004 * 120.41424 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4189 2.2031 -1.1733 5 6 1.9429 1.6260 -2.4898 6 6 1.6476 2.1221 1.3134 7 7 2.3648 1.4901 2.4236 8 6 3.7305 1.9102 2.7471 9 6 3.6911 2.9514 3.8359 10 1 2.7424 3.3271 4.1898 11 6 4.8663 3.4243 4.3803 12 7 6.0221 3.0441 3.8811 13 14 4.8168 4.6051 5.8269 14 1 3.4043 4.8749 6.1975 15 1 5.5258 4.0010 6.9834 16 1 5.4809 5.8786 5.4493 17 6 1.7515 0.4953 3.1674 18 7 0.4806 0.2044 2.9336 19 6 -0.1345 -0.7432 3.6223 20 6 0.5659 -1.4272 4.6060 21 9 -0.0324 -2.3968 5.3320 22 6 1.8943 -1.0925 4.8275 23 7 2.4490 -0.1382 4.0984 24 1 -0.3634 -1.0204 0.1218 25 1 -0.3632 0.6157 0.8228 26 1 -0.3634 0.4048 -0.9445 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.1254 1.4441 -0.0998 30 1 0.3342 2.1019 -1.1384 31 1 1.6879 3.2573 -1.1061 32 1 1.5793 2.2296 -3.3213 33 1 3.0328 1.6362 -2.4828 34 1 1.5898 0.6010 -2.6033 35 1 0.5737 2.0192 1.4691 36 1 1.9084 3.1795 1.2674 37 1 4.2012 2.3311 1.8586 38 1 4.3043 1.0488 3.0888 39 1 6.8489 3.3771 4.2639 40 1 -1.1698 -0.9784 3.4243 41 1 2.4682 -1.6048 5.5856 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339057768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:15 Heat of formation + Delta-G solvation = -10.886296 kcal Electronic energy + Delta-G solvation = -22876.859190 eV Core-core repulsion = 19512.978273 eV Total energy + Delta-G solvation = -3363.880918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.68891 -41.84128 -39.17979 -36.68584 -34.76828 -34.55867 -31.91805 -31.55777 -30.04885 -28.10002 -26.06694 -25.31869 -24.88812 -24.10182 -22.38957 -19.95462 -18.97561 -18.80414 -18.46015 -18.11144 -16.95138 -16.61594 -16.52632 -16.22485 -15.72900 -15.41281 -15.07200 -14.81385 -14.49085 -14.31308 -13.96594 -13.78418 -13.58421 -13.35086 -12.97472 -12.81057 -12.72805 -12.51706 -12.49253 -12.40159 -12.11731 -12.02473 -11.85497 -11.69678 -11.32464 -11.27680 -11.19017 -10.68014 -10.61344 -9.87602 -8.63751 -8.13139 -6.32968 0.13496 0.21854 1.35471 1.37562 1.48444 1.95561 2.38686 2.90649 3.09393 3.15508 3.30850 3.65225 3.91678 3.95056 4.00914 4.02766 4.11304 4.43626 4.49932 4.61049 4.67627 4.71724 4.75544 4.90199 4.95513 4.98643 5.05900 5.11528 5.18298 5.25362 5.35797 5.37428 5.44234 5.52466 5.54750 5.66599 5.74021 5.94413 6.04197 6.16555 6.62264 6.79196 7.32019 7.44250 8.86148 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.007556 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.050576 B = 3704.542149 C = 5873.648484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C -0.097 4.097 4 C -0.112 4.112 5 C -0.146 4.146 6 C 0.130 3.870 7 N -0.566 5.566 8 C 0.280 3.720 9 C -0.534 4.534 10 H 0.044 0.956 11 C 0.017 3.983 12 N -0.923 5.923 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.273 1.273 17 C 0.554 3.446 18 N -0.547 5.547 19 C 0.174 3.826 20 C -0.096 4.096 21 F -0.131 7.131 22 C 0.162 3.838 23 N -0.571 5.571 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.022 0.978 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.266 0.734 40 H 0.210 0.790 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 -6.596 -6.956 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.117 4.117 4 C -0.150 4.150 5 C -0.204 4.204 6 C 0.007 3.993 7 N -0.277 5.277 8 C 0.159 3.841 9 C -0.573 4.573 10 H 0.062 0.938 11 C -0.182 4.182 12 N -0.563 5.563 13 Si 0.784 3.216 14 H -0.199 1.199 15 H -0.204 1.204 16 H -0.199 1.199 17 C 0.199 3.801 18 N -0.270 5.270 19 C 0.004 3.996 20 C -0.125 4.125 21 F -0.110 7.110 22 C -0.008 4.008 23 N -0.293 5.293 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.226 0.774 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.126 -5.648 -7.614 15.392 hybrid contribution 0.325 -0.270 1.677 1.730 sum -11.801 -5.919 -5.936 14.475 Atomic orbital electron populations 1.21818 0.93963 1.01614 1.02486 1.21295 0.97788 0.95206 0.99532 1.21544 0.99235 0.96275 0.94660 1.21521 1.01325 0.98937 0.93240 1.21743 1.00520 1.01352 0.96752 1.21690 0.97714 0.95587 0.84275 1.46735 1.15837 1.34504 1.30641 1.18742 0.76980 0.94014 0.94393 1.21616 0.92200 1.22788 1.20662 0.93775 1.25665 0.94870 0.98290 0.99398 1.70036 0.97930 1.46008 1.42276 0.85508 0.77967 0.78745 0.79387 1.19875 1.20395 1.19865 1.19502 0.85666 0.87846 0.87055 1.68061 1.08367 1.19804 1.30724 1.23576 1.01154 0.87433 0.87457 1.18982 0.94874 0.97359 1.01245 1.91465 1.83207 1.60206 1.76147 1.23456 0.91548 0.90503 0.95276 1.68130 1.39771 1.11315 1.10055 0.93513 0.91121 0.91639 0.92195 0.95958 0.93777 0.89935 0.92166 0.91420 0.93893 0.92275 0.88346 0.91952 0.96623 0.96454 0.92460 0.77364 0.79552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.47 71.98 0.61 -2.65 16 2 C -0.10 -2.84 4.90 30.59 0.15 -2.69 16 3 C -0.10 -2.92 2.34 -10.79 -0.03 -2.94 16 4 C -0.11 -2.58 5.10 30.59 0.16 -2.42 16 5 C -0.15 -2.95 9.57 71.98 0.69 -2.26 16 6 C 0.13 4.57 4.84 86.38 0.42 4.99 16 7 N -0.57 -24.49 2.35 -715.11 -1.68 -26.17 16 8 C 0.28 14.70 5.18 85.64 0.44 15.14 16 9 C -0.53 -30.16 9.36 25.60 0.24 -29.92 16 10 H 0.04 2.54 7.82 -2.91 -0.02 2.52 16 11 C 0.02 0.97 5.45 84.66 0.46 1.44 16 12 N -0.92 -54.44 13.29 21.45 0.29 -54.16 16 13 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.55 22.62 6.66 261.46 1.74 24.36 16 18 N -0.55 -18.06 6.32 -197.78 -1.25 -19.32 16 19 C 0.17 4.66 11.29 84.75 0.96 5.62 16 20 C -0.10 -2.74 7.38 22.53 0.17 -2.58 16 21 F -0.13 -3.41 17.30 44.97 0.78 -2.63 16 22 C 0.16 5.41 11.29 84.75 0.96 6.37 16 23 N -0.57 -24.33 9.16 -197.79 -1.81 -26.14 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.77 4.73 -2.39 -0.01 1.76 16 26 H 0.06 1.26 6.61 -2.39 -0.02 1.24 16 27 H 0.06 1.56 7.02 -2.38 -0.02 1.54 16 28 H 0.02 0.76 6.20 -2.39 -0.01 0.75 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.65 6.11 -2.39 -0.01 1.63 16 31 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.12 7.02 -2.39 -0.02 1.10 16 35 H 0.10 3.17 5.27 -2.38 -0.01 3.16 16 36 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 37 H 0.02 0.87 8.03 -2.39 -0.02 0.85 16 38 H 0.02 1.01 7.42 -2.39 -0.02 1.00 16 39 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.21 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.19 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -64.53 330.58 6.33 -58.20 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.02 Total: 11.09 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.96 Total: 12.45 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -4.46 Total: -125.78 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.53 6.33 -58.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339057768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.312 kcal (2) G-P(sol) polarization free energy of solvation -64.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds