Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46910 * 2 1 4 4 N 1.33867 * 119.80268 * 269.97545 * 3 2 1 5 5 C 1.30328 * 122.04686 * 180.02562 * 4 3 2 6 6 N 1.35783 * 121.44956 * 359.71482 * 5 4 3 7 7 H 0.96993 * 120.30714 * 180.31392 * 6 5 4 8 8 C 1.37973 * 119.38193 * 0.58246 * 6 5 4 9 9 N 1.31502 * 120.92173 * 179.70465 * 8 6 5 10 10 C 1.46499 * 120.00082 * 5.51400 * 9 8 6 11 11 C 1.53005 * 109.47031 * 115.25037 * 10 9 8 12 12 C 1.53002 * 109.47132 * 300.00461 * 11 10 9 13 13 C 1.53003 * 109.46679 * 60.00093 * 11 10 9 14 14 C 1.52997 * 109.47334 * 180.02562 * 11 10 9 15 15 C 1.50695 * 109.46976 * 180.02562 * 14 11 10 16 16 H 1.07994 * 120.00523 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99807 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00185 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46781 * 60.00331 * 19 17 15 21 21 H 1.48495 * 109.47228 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47175 * 300.00581 * 19 17 15 23 23 C 1.35737 * 119.80585 * 90.00267 * 3 2 1 24 24 F 1.35101 * 120.71353 * 0.02562 * 23 3 2 25 25 H 1.09004 * 109.47428 * 300.00336 * 1 2 3 26 26 H 1.09006 * 109.47189 * 60.00000 * 1 2 3 27 27 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47273 * 240.00348 * 2 1 3 29 29 H 1.08997 * 109.47087 * 119.99415 * 2 1 3 30 30 H 1.07998 * 119.27776 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47053 * 355.25551 * 10 9 8 32 32 H 1.08997 * 109.47690 * 235.25135 * 10 9 8 33 33 H 1.09006 * 109.47080 * 59.99705 * 12 11 10 34 34 H 1.08998 * 109.46741 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.46764 * 299.99472 * 12 11 10 36 36 H 1.08997 * 109.47055 * 60.00506 * 13 11 10 37 37 H 1.08998 * 109.46850 * 180.02562 * 13 11 10 38 38 H 1.08994 * 109.47365 * 299.99777 * 13 11 10 39 39 H 1.09000 * 109.47242 * 300.00614 * 14 11 10 40 40 H 1.09004 * 109.46947 * 60.00393 * 14 11 10 41 41 H 0.96997 * 120.00770 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2545 2.0480 -1.1616 5 6 2.6890 3.2756 -1.2127 6 7 2.9347 3.9877 -0.0829 7 1 3.2535 4.9019 -0.1402 8 6 2.7319 3.3968 1.1473 9 7 2.9657 4.0565 2.2606 10 6 3.3317 5.4741 2.2089 11 6 2.2358 6.3083 2.8754 12 6 0.9128 6.0959 2.1368 13 6 2.0808 5.8744 4.3344 14 6 2.6177 7.7889 2.8210 15 6 1.5386 8.6104 3.4779 16 1 0.6678 8.1251 3.8932 17 6 1.6636 9.9817 3.5498 18 7 2.7244 10.5727 3.0446 19 14 0.3258 11.0002 4.3636 20 1 0.1753 10.5789 5.7796 21 1 0.6965 12.4371 4.3108 22 1 -0.9583 10.7940 3.6467 23 6 2.2572 2.0569 1.1778 24 9 2.0361 1.4299 2.3539 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.8526 3.7384 -2.1746 31 1 3.4421 5.7832 1.1695 32 1 4.2742 5.6255 2.7351 33 1 0.6406 5.0410 2.1753 34 1 0.1321 6.6898 2.6119 35 1 1.0233 6.4050 1.0975 36 1 3.0233 6.0258 4.8605 37 1 1.2998 6.4683 4.8091 38 1 1.8085 4.8197 4.3728 39 1 3.5603 7.9406 3.3468 40 1 2.7278 8.0977 1.7814 41 1 2.8122 11.5374 3.0949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340899560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -2.763250 kcal Electronic energy + Delta-G solvation = -22317.071589 eV Core-core repulsion = 18953.542913 eV Total energy + Delta-G solvation = -3363.528676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.71037 -40.96857 -37.62783 -35.78693 -34.06030 -32.41040 -31.80795 -29.92028 -27.07296 -26.55041 -26.32482 -24.70927 -23.65479 -22.80243 -20.97476 -19.06724 -18.62580 -17.72405 -16.89358 -16.23032 -16.08673 -15.59167 -14.98225 -14.50967 -14.33092 -14.22190 -13.84419 -13.82535 -13.57003 -13.01909 -12.76491 -12.66033 -12.16559 -12.04107 -11.65582 -11.44858 -11.23522 -11.05273 -10.93312 -10.83617 -10.65474 -10.54378 -10.21736 -10.15028 -9.98678 -9.76886 -9.43075 -9.00632 -8.92630 -8.36417 -7.44039 -6.01189 -4.01617 0.54661 1.77434 2.64435 3.32134 3.33969 3.36603 3.39554 3.82659 3.88561 4.42017 4.45344 4.69214 4.93762 5.08420 5.14175 5.23136 5.34446 5.43896 5.55216 5.70821 5.71784 5.80366 5.88749 6.00326 6.06679 6.12756 6.25715 6.36365 6.45748 6.64172 6.70161 6.78582 6.80834 7.12509 7.21574 7.25638 7.61080 7.71213 7.75547 7.97252 8.02314 8.42715 9.02900 9.61498 11.10346 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.003740 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.185393 B = 7484.678081 C = 7662.505845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C 0.110 3.890 4 N -0.537 5.537 5 C 0.376 3.624 6 N -0.655 5.655 7 H 0.423 0.577 8 C 0.354 3.646 9 N -0.541 5.541 10 C 0.060 3.940 11 C -0.052 4.052 12 C -0.124 4.124 13 C -0.117 4.117 14 C 0.035 3.965 15 C -0.509 4.509 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.024 3.976 24 F -0.111 7.111 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.205 0.795 31 H 0.024 0.976 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -17.906 -10.042 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.009 4.009 4 N -0.260 5.260 5 C 0.088 3.912 6 N -0.287 5.287 7 H 0.265 0.735 8 C 0.083 3.917 9 N -0.265 5.265 10 C -0.070 4.070 11 C -0.052 4.052 12 C -0.181 4.181 13 C -0.175 4.175 14 C -0.002 4.002 15 C -0.547 4.547 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.003 4.003 24 F -0.090 7.090 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.221 0.779 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.366 -18.393 -9.571 20.738 hybrid contribution -0.224 2.044 0.542 2.127 sum -0.590 -16.349 -9.029 18.686 Atomic orbital electron populations 1.21693 0.93801 1.02166 1.02518 1.20397 0.96779 0.89811 1.03854 1.20771 0.96202 0.97285 0.86618 1.68032 1.22872 1.08442 1.26645 1.24957 0.87069 0.87869 0.91327 1.44347 1.60314 1.18273 1.05756 0.73488 1.20082 0.96565 0.93024 0.82057 1.73331 1.22463 1.09931 1.20779 1.22223 1.00368 0.86165 0.98215 1.20666 0.92585 0.96906 0.95063 1.21717 0.98485 0.98973 0.98948 1.21600 1.01207 0.99325 0.95339 1.19135 0.96909 0.87328 0.96842 1.21176 1.05348 0.91258 1.36909 0.92333 1.25004 0.95627 0.98088 0.95749 1.69945 1.27968 1.09791 1.46075 0.86706 0.82293 0.79191 0.80131 1.20227 1.21366 1.20331 1.17232 1.10529 0.89961 0.82561 1.91490 1.92358 1.80305 1.44825 0.92456 0.92137 0.91825 0.89493 0.89964 0.77914 0.95735 0.90083 0.94982 0.91631 0.94650 0.94001 0.92424 0.93821 0.96544 0.97002 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.07 -0.66 6.05 -27.88 -0.17 -0.83 16 3 C 0.11 1.30 6.02 -82.60 -0.50 0.81 16 4 N -0.54 -5.74 10.29 -10.55 -0.11 -5.85 16 5 C 0.38 3.21 12.40 -89.84 -1.11 2.09 16 6 N -0.65 -7.19 5.31 -13.02 -0.07 -7.26 16 7 H 0.42 4.21 6.33 -40.82 -0.26 3.95 16 8 C 0.35 5.23 7.37 -155.60 -1.15 4.08 16 9 N -0.54 -9.41 8.98 -60.01 -0.54 -9.95 16 10 C 0.06 1.07 5.24 -4.04 -0.02 1.05 16 11 C -0.05 -1.07 0.60 -154.50 -0.09 -1.16 16 12 C -0.12 -2.46 8.06 37.16 0.30 -2.16 16 13 C -0.12 -2.44 8.06 37.16 0.30 -2.14 16 14 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 15 C -0.51 -13.93 7.65 -34.44 -0.26 -14.19 16 16 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.02 0.35 7.30 -38.96 -0.28 0.06 16 24 F -0.11 -1.71 16.34 2.25 0.04 -1.68 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.74 7.61 -51.93 -0.40 0.35 16 30 H 0.20 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.02 0.39 5.47 -51.93 -0.28 0.10 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.03 0.60 7.48 -51.93 -0.39 0.22 16 34 H 0.06 1.39 6.62 -51.93 -0.34 1.05 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 38 H 0.04 0.87 7.60 -51.93 -0.39 0.47 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -32.35 336.26 -8.80 -41.15 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.07 Total: -1.19 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.83 Total: -11.03 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.02 Total: -48.88 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.35 -8.80 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340899560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.389 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds