Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 C 1.53000 * 109.47005 * 65.00480 * 3 2 1 5 5 C 1.52998 * 109.47397 * 184.90238 * 4 3 2 6 6 C 1.52997 * 109.46882 * 185.00314 * 3 2 1 7 7 H 1.09007 * 109.47026 * 182.05283 * 6 3 2 8 8 N 1.46893 * 109.47423 * 62.05161 * 6 3 2 9 9 C 1.46903 * 111.00109 * 153.94267 * 8 6 3 10 10 C 1.53006 * 109.46966 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.46900 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99607 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99666 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00489 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47191 * 89.99737 * 15 13 11 17 17 H 1.48496 * 109.47384 * 209.99827 * 15 13 11 18 18 H 1.48500 * 109.47116 * 330.00016 * 15 13 11 19 19 C 1.50697 * 109.47169 * 302.04744 * 6 3 2 20 20 C 1.33391 * 125.20918 * 259.72016 * 19 6 3 21 21 C 1.38423 * 114.92173 * 179.86300 * 20 19 6 22 22 C 1.33388 * 114.92215 * 0.42860 * 21 20 19 23 23 S 1.75888 * 125.19872 * 80.02991 * 19 6 3 24 24 H 1.08996 * 109.46754 * 299.99210 * 1 2 3 25 25 H 1.08997 * 109.47344 * 59.99545 * 1 2 3 26 26 H 1.08997 * 109.46921 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46931 * 240.00393 * 2 1 3 28 28 H 1.08997 * 109.47344 * 120.00454 * 2 1 3 29 29 H 1.09003 * 109.47381 * 305.00565 * 3 2 1 30 30 H 1.09007 * 109.47181 * 304.90317 * 4 3 2 31 31 H 1.09002 * 109.47209 * 64.90030 * 4 3 2 32 32 H 1.09001 * 109.47259 * 54.21754 * 5 4 3 33 33 H 1.08996 * 109.47401 * 174.23062 * 5 4 3 34 34 H 1.09009 * 109.46694 * 294.22848 * 5 4 3 35 35 H 1.00901 * 110.99784 * 29.99548 * 8 6 3 36 36 H 1.09002 * 109.46431 * 60.00682 * 9 8 6 37 37 H 1.08994 * 109.47507 * 300.00341 * 9 8 6 38 38 H 1.09003 * 109.47076 * 300.00161 * 10 9 8 39 39 H 1.09000 * 109.47236 * 60.00194 * 10 9 8 40 40 H 0.97001 * 119.99480 * 180.02562 * 14 13 11 41 41 H 1.08002 * 122.53352 * 0.02562 * 20 19 6 42 42 H 1.07997 * 122.53403 * 180.20294 * 21 20 19 43 43 H 1.07994 * 125.20304 * 179.75125 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0376 3.6018 1.2570 6 6 3.5648 1.4443 -0.1258 7 1 3.9312 2.4703 -0.0891 8 7 3.9515 0.8316 -1.4036 9 6 5.2552 1.3354 -1.8559 10 6 5.6228 0.6764 -3.1869 11 6 6.9605 1.1928 -3.6506 12 1 7.4948 1.9187 -3.0556 13 6 7.5017 0.7392 -4.8348 14 7 8.6689 1.1903 -5.2396 15 14 6.5772 -0.5157 -5.8641 16 1 5.6923 0.1886 -6.8265 17 1 7.5482 -1.3569 -6.6089 18 1 5.7561 -1.3766 -4.9754 19 6 4.1635 0.6563 1.0107 20 6 4.6953 1.1824 2.1151 21 6 5.1824 0.2595 3.0246 22 6 5.0544 -1.0156 2.6548 23 16 4.2750 -1.0977 1.0801 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6053 1.9816 -0.8418 30 1 0.5561 2.0484 1.4394 31 1 2.1396 1.6407 2.1428 32 1 1.6159 4.0631 0.3640 33 1 1.6593 4.1120 2.1428 34 1 3.1244 3.6812 1.2282 35 1 3.2425 0.9817 -2.1058 36 1 6.0146 1.0984 -1.1107 37 1 5.2011 2.4159 -1.9886 38 1 5.6768 -0.4042 -3.0546 39 1 4.8633 0.9137 -3.9319 40 1 9.0495 0.8714 -6.0730 41 1 4.7398 2.2476 2.2878 42 1 5.6352 0.5502 3.9610 43 1 5.3799 -1.8674 3.2335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341576854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = -9.620438 kcal Electronic energy + Delta-G solvation = -20429.669908 eV Core-core repulsion = 17599.764307 eV Total energy + Delta-G solvation = -2829.905601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16809 -37.81562 -36.56000 -34.76590 -32.65021 -32.30793 -30.26449 -28.20922 -25.96318 -25.02944 -23.56580 -23.31307 -22.24149 -20.94846 -19.76303 -18.98426 -17.58331 -16.99573 -16.44912 -16.18683 -15.89199 -15.61487 -15.33379 -14.87343 -14.67596 -14.25032 -14.16325 -13.96773 -13.50161 -13.44988 -13.33379 -12.96027 -12.92420 -12.82592 -12.60009 -12.38000 -12.11603 -11.96289 -11.79247 -11.70174 -11.46366 -11.41627 -11.38601 -11.27454 -11.06864 -10.77063 -9.41796 -9.40444 -9.10884 -8.30237 -6.34698 0.24096 0.91880 1.35681 1.35773 1.38792 1.51759 1.95470 2.36480 3.05607 3.22187 3.72709 3.88817 4.04820 4.22526 4.32375 4.40060 4.42224 4.51006 4.54050 4.61063 4.66703 4.72693 4.77743 4.80421 4.91177 4.93991 4.95924 5.13455 5.16406 5.22581 5.31725 5.32446 5.34560 5.43789 5.47707 5.49577 5.55751 5.60723 5.64318 5.69399 6.11719 6.24931 6.51935 6.73812 7.30130 8.86672 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.004921 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.512410 B = 5688.696366 C = 6148.859660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.078 4.078 4 C -0.114 4.114 5 C -0.153 4.153 6 C 0.155 3.845 7 H 0.057 0.943 8 N -0.684 5.684 9 C 0.095 3.905 10 C -0.001 4.001 11 C -0.533 4.533 12 H 0.029 0.971 13 C 0.006 3.994 14 N -0.952 5.952 15 Si 0.953 3.047 16 H -0.264 1.264 17 H -0.285 1.285 18 H -0.248 1.248 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.140 4.140 22 C -0.244 4.244 23 S 0.119 5.881 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.348 0.652 36 H 0.045 0.955 37 H 0.017 0.983 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.267 0.733 41 H 0.141 0.859 42 H 0.153 0.847 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.999 -1.787 16.636 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.097 4.097 4 C -0.151 4.151 5 C -0.211 4.211 6 C 0.044 3.956 7 H 0.075 0.925 8 N -0.316 5.316 9 C -0.034 4.034 10 C -0.039 4.039 11 C -0.571 4.571 12 H 0.047 0.953 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.776 3.224 16 H -0.189 1.189 17 H -0.211 1.211 18 H -0.171 1.171 19 C -0.270 4.270 20 C -0.191 4.191 21 C -0.171 4.171 22 C -0.379 4.379 23 S 0.383 5.617 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.168 0.832 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.159 0.841 42 H 0.171 0.829 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.028 -3.554 15.838 24.259 hybrid contribution 0.838 1.755 -0.038 1.945 sum -17.189 -1.799 15.800 23.417 Atomic orbital electron populations 1.21786 0.94772 1.01797 1.02055 1.21657 0.96387 0.95537 1.02476 1.21352 0.91471 0.97438 0.99410 1.21567 1.01718 0.95427 0.96432 1.21823 1.01003 0.96159 1.02064 1.20104 0.95153 0.93960 0.86393 0.92509 1.60462 1.04491 1.61454 1.05171 1.21571 0.90146 0.95413 0.96290 1.19402 0.94316 0.96522 0.93636 1.21395 1.04473 1.24842 1.06406 0.95293 1.25991 0.95641 0.98523 0.98900 1.70075 1.19502 1.46103 1.23550 0.85614 0.78674 0.79309 0.78781 1.18906 1.21053 1.17119 1.24598 1.06065 0.96541 0.99824 1.20256 1.02765 1.01439 0.94647 1.20294 1.03074 0.91924 1.01786 1.26036 1.09131 1.01831 1.00922 1.84493 1.57087 1.04416 1.15673 0.91979 0.92587 0.92643 0.92184 0.91915 0.90215 0.90389 0.92137 0.92658 0.91817 0.93630 0.83182 0.93675 0.96458 0.96074 0.96106 0.92465 0.84150 0.82909 0.80550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.67 71.98 0.70 -1.71 16 2 C -0.12 -2.53 4.45 30.60 0.14 -2.40 16 3 C -0.08 -1.59 1.53 -10.79 -0.02 -1.61 16 4 C -0.11 -2.01 5.11 30.59 0.16 -1.85 16 5 C -0.15 -2.60 9.52 71.98 0.69 -1.92 16 6 C 0.16 4.10 2.07 44.17 0.09 4.19 16 7 H 0.06 1.58 6.22 -2.38 -0.01 1.57 16 8 N -0.68 -21.60 5.33 -495.45 -2.64 -24.25 16 9 C 0.09 3.84 5.42 86.30 0.47 4.31 16 10 C 0.00 -0.05 4.30 29.85 0.13 0.08 16 11 C -0.53 -31.46 9.66 25.60 0.25 -31.21 16 12 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 13 C 0.01 0.37 5.47 84.65 0.46 0.83 16 14 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 15 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 16 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 19 C -0.15 -4.11 3.78 24.59 0.09 -4.01 16 20 C -0.16 -4.01 9.16 21.22 0.19 -3.82 16 21 C -0.14 -3.22 10.18 21.22 0.22 -3.00 16 22 C -0.24 -5.70 11.23 66.72 0.75 -4.95 16 23 S 0.12 3.22 20.71 -56.49 -1.17 2.05 16 24 H 0.06 0.90 6.46 -2.39 -0.02 0.89 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.43 7.46 -2.38 -0.02 1.41 16 28 H 0.06 1.39 5.84 -2.39 -0.01 1.38 16 29 H 0.08 1.56 8.09 -2.39 -0.02 1.55 16 30 H 0.08 1.18 6.35 -2.38 -0.02 1.17 16 31 H 0.06 1.18 6.48 -2.39 -0.02 1.17 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.86 6.81 -2.38 -0.02 0.85 16 35 H 0.35 10.05 8.23 -89.69 -0.74 9.31 16 36 H 0.04 1.99 8.04 -2.39 -0.02 1.97 16 37 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 38 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 39 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 40 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 42 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -66.27 345.61 2.86 -63.41 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.18 Total: 19.27 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 4.31 Total: -47.08 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -2.34 Total: -84.64 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.17 Total: 2.05 kcal Total: -66.27 2.86 -63.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341576854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.791 kcal (2) G-P(sol) polarization free energy of solvation -66.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds