Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47379 * 2 1 4 4 C 1.52999 * 109.46924 * 119.99733 * 2 1 3 5 5 F 1.39900 * 109.46947 * 179.97438 * 4 2 1 6 6 N 1.46900 * 109.47056 * 239.99662 * 2 1 3 7 7 C 1.46896 * 111.00195 * 84.99938 * 6 2 1 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 2 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 H 1.08989 * 109.47362 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46729 * 300.00191 * 1 2 3 27 27 H 1.08996 * 109.46750 * 60.00177 * 1 2 3 28 28 H 1.09002 * 109.47480 * 299.99617 * 4 2 1 29 29 H 1.09003 * 109.47074 * 59.99679 * 4 2 1 30 30 H 1.00901 * 111.00271 * 208.95658 * 6 2 1 31 31 H 1.09005 * 109.46944 * 59.99947 * 7 6 2 32 32 H 1.09002 * 109.47398 * 300.00389 * 7 6 2 33 33 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 34 34 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 35 35 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 36 36 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 37 37 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 38 38 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 39 39 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 40 40 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 9 3.4390 -0.7217 1.2490 6 7 2.0197 -0.6926 -1.1994 7 6 2.0825 0.2224 -2.3469 8 6 2.5885 -0.5218 -3.5557 9 6 3.9454 -0.5736 -3.8170 10 6 4.4129 -1.2559 -4.9248 11 6 3.5251 -1.8919 -5.7711 12 6 2.1631 -1.8370 -5.5141 13 8 1.2876 -2.4577 -6.3478 14 6 1.8388 -3.1438 -7.4736 15 6 0.7091 -3.7758 -8.2891 16 6 1.2905 -4.4998 -9.4760 17 1 2.3590 -4.5087 -9.6327 18 6 0.4584 -5.1518 -10.3612 19 7 -0.8427 -5.1413 -10.1700 20 14 1.1790 -6.0487 -11.8328 21 1 2.6575 -5.9104 -11.8213 22 1 0.8162 -7.4869 -11.7623 23 1 0.6363 -5.4621 -13.0844 24 6 1.6965 -1.1519 -4.4014 25 1 -0.3633 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6767 -0.2073 2.1393 29 1 1.6766 -1.7489 1.2493 30 1 2.9173 -1.1206 -1.0287 31 1 2.7589 1.0460 -2.1183 32 1 1.0871 0.6162 -2.5526 33 1 4.6414 -0.0810 -3.1541 34 1 5.4731 -1.2954 -5.1265 35 1 3.8910 -2.4282 -6.6343 36 1 2.3863 -2.4371 -8.0973 37 1 2.5168 -3.9239 -7.1273 38 1 0.1620 -4.4825 -7.6651 39 1 0.0307 -2.9960 -8.6353 40 1 -1.4281 -5.6003 -10.7926 41 1 0.6369 -1.1110 -4.1969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342193988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -85.072101 kcal Electronic energy + Delta-G solvation = -20896.797613 eV Core-core repulsion = 17497.407006 eV Total energy + Delta-G solvation = -3399.390607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.01296 -39.81619 -37.89156 -36.60854 -33.39389 -32.67742 -30.85159 -29.80632 -29.02199 -26.98609 -25.43971 -24.63372 -22.33633 -21.63291 -21.12376 -20.16410 -17.69868 -16.81987 -16.51630 -16.25921 -16.12156 -15.66237 -15.56612 -15.29974 -14.85196 -14.53883 -14.37798 -13.96174 -13.44529 -13.09986 -12.86670 -12.66876 -12.37346 -12.33915 -12.22259 -11.92880 -11.54841 -11.39938 -11.32705 -11.17340 -10.98920 -10.87816 -10.67892 -10.42624 -9.85312 -9.65213 -9.28020 -8.83978 -8.64147 -8.44881 -7.82942 -6.10179 -4.14677 1.44893 1.69051 3.26743 3.33765 3.37433 3.66447 3.85058 4.09934 4.12596 4.40990 4.48338 4.61126 4.69710 4.86790 4.95766 5.05279 5.14171 5.26347 5.28537 5.32586 5.41817 5.48202 5.48512 5.58158 5.71043 5.84429 5.95346 6.04690 6.07683 6.20186 6.55609 6.58242 6.64143 6.68038 6.74769 6.99983 7.07793 7.51794 7.64878 7.82235 8.07852 8.24462 8.91185 9.49667 11.01489 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.002615 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.669267 B =10705.964263 C =11190.740277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 H 0.054 0.946 4 C 0.057 3.943 5 F -0.219 7.219 6 N -0.678 5.678 7 C 0.104 3.896 8 C -0.053 4.053 9 C -0.166 4.166 10 C -0.080 4.080 11 C -0.210 4.210 12 C 0.144 3.856 13 O -0.315 6.315 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.138 4.138 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.348 0.652 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 11.851 21.014 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 H 0.072 0.928 4 C 0.001 3.999 5 F -0.200 7.200 6 N -0.311 5.311 7 C -0.024 4.024 8 C -0.053 4.053 9 C -0.185 4.185 10 C -0.098 4.098 11 C -0.229 4.229 12 C 0.097 3.903 13 O -0.229 6.229 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.157 4.157 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.168 0.832 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.587 11.523 20.777 24.407 hybrid contribution 1.397 -0.074 -0.784 1.604 sum 6.984 11.449 19.994 24.075 Atomic orbital electron populations 1.21744 0.93073 1.03164 1.01950 1.22144 0.97344 0.96699 0.89707 0.92801 1.22286 0.75470 1.03309 0.98795 1.92760 1.31449 1.98133 1.97686 1.60564 1.34329 1.32841 1.03383 1.20880 1.00944 0.92557 0.88066 1.19354 0.92957 0.97844 0.95184 1.20783 0.94624 1.03789 0.99254 1.20844 0.99077 0.95932 0.93996 1.21398 0.92721 1.05753 1.03041 1.19197 0.88894 0.91705 0.90486 1.86175 1.34977 1.64712 1.36996 1.23324 0.99774 0.93855 0.83917 1.19128 0.92654 0.95951 0.93497 1.21010 0.93464 1.33324 1.08569 0.92326 1.24996 0.94807 0.96289 0.98143 1.69991 1.02669 1.42982 1.37131 0.86431 0.79271 0.79427 0.82262 1.19646 1.20827 1.20834 1.20249 1.00299 1.00978 0.94198 0.91344 0.92300 0.91778 0.90104 0.89634 0.83242 0.94212 0.89938 0.86770 0.86207 0.85257 0.93165 0.93145 0.95373 0.95398 0.92760 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.42 37.16 0.35 -0.60 16 2 C 0.05 0.38 3.00 -67.71 -0.20 0.18 16 3 H 0.05 0.40 7.80 -51.93 -0.41 -0.01 16 4 C 0.06 0.38 7.07 37.16 0.26 0.64 16 5 F -0.22 -2.06 16.64 2.25 0.04 -2.03 16 6 N -0.68 -6.63 6.30 -107.99 -0.68 -7.31 16 7 C 0.10 1.06 5.61 -4.98 -0.03 1.03 16 8 C -0.05 -0.68 5.39 -104.65 -0.56 -1.25 16 9 C -0.17 -2.05 9.70 -39.56 -0.38 -2.44 16 10 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 11 C -0.21 -3.35 9.04 -39.43 -0.36 -3.71 16 12 C 0.14 2.57 6.69 -39.22 -0.26 2.30 16 13 O -0.32 -6.62 10.14 -19.43 -0.20 -6.82 16 14 C 0.07 1.42 4.68 37.16 0.17 1.59 16 15 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 16 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.14 -2.14 9.64 -39.43 -0.38 -2.52 16 25 H 0.07 0.50 8.14 -51.94 -0.42 0.08 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.35 3.54 7.76 -39.29 -0.31 3.23 16 31 H 0.04 0.36 8.00 -51.93 -0.42 -0.05 16 32 H 0.08 0.81 7.38 -51.93 -0.38 0.43 16 33 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 2.03 6.30 -52.48 -0.33 1.70 16 36 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 37 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -30.69 346.48 -8.62 -39.31 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.37 Total: 0.32 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.35 Total: -19.17 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.06 Total: -33.17 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.20 Total: -6.82 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.69 -8.62 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342193988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.764 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds