Wall clock time and date at job start Tue Mar 31 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00113 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99923 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47375 * 89.99678 * 9 7 5 11 11 H 1.48508 * 109.47196 * 209.99673 * 9 7 5 12 12 H 1.48504 * 109.47051 * 329.99297 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 N 1.46899 * 109.47254 * 300.00134 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 C 1.50696 * 109.46800 * 180.02562 * 15 14 13 17 17 C 1.38179 * 119.96099 * 90.00755 * 16 15 14 18 18 C 1.38725 * 119.99880 * 179.97438 * 17 16 15 19 19 O 1.35894 * 120.04287 * 179.97438 * 18 17 16 20 20 C 1.38716 * 119.91195 * 0.02562 * 18 17 16 21 21 C 1.38340 * 119.91994 * 359.97438 * 20 18 17 22 22 F 1.35101 * 119.99750 * 179.97438 * 21 20 18 23 23 C 1.38207 * 119.96259 * 269.72687 * 16 15 14 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 29 29 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 30 30 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 32 32 H 0.97008 * 120.00167 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 35 35 H 1.00902 * 111.00582 * 303.95797 * 14 13 2 36 36 H 1.08995 * 109.47167 * 300.00240 * 15 14 13 37 37 H 1.09003 * 109.46442 * 60.00214 * 15 14 13 38 38 H 1.08000 * 120.00056 * 359.96778 * 17 16 15 39 39 H 0.96699 * 113.99603 * 90.00813 * 19 18 17 40 40 H 1.07997 * 120.04032 * 179.97438 * 20 18 17 41 41 H 1.08001 * 119.95316 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 1.4324 0.1382 -4.8057 9 14 2.9453 -2.0001 -3.9034 10 1 2.0868 -3.2110 -3.9494 11 1 3.7377 -1.9073 -5.1560 12 1 3.8654 -2.0895 -2.7412 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0209 -0.6953 3.6703 16 6 1.4993 0.0414 4.8771 17 6 0.2830 -0.3126 5.4291 18 6 -0.1977 0.3646 6.5403 19 8 -1.3939 0.0176 7.0837 20 6 0.5439 1.3972 7.0954 21 6 1.7611 1.7486 6.5399 22 9 2.4844 2.7544 7.0789 23 6 2.2406 1.0663 5.4338 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 -0.7207 -1.2494 31 1 1.6767 -1.7488 -1.2493 32 1 1.6674 -0.1927 -5.6868 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 1.8197 0.9436 2.4402 36 1 1.6572 -1.7226 3.6869 37 1 3.1108 -0.6954 3.6872 38 1 -0.2934 -1.1164 4.9955 39 1 -1.3321 -0.6610 7.7699 40 1 0.1714 1.9260 7.9602 41 1 3.1929 1.3386 5.0032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342287506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:50 Heat of formation + Delta-G solvation = -78.591325 kcal Electronic energy + Delta-G solvation = -21510.760139 eV Core-core repulsion = 18111.650560 eV Total energy + Delta-G solvation = -3399.109579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.17477 -40.04361 -37.99548 -37.00314 -34.48509 -32.30827 -30.96416 -30.00913 -27.78086 -26.43904 -26.34923 -24.35852 -22.97908 -22.01377 -21.58365 -18.71686 -17.81863 -17.06846 -16.94701 -16.76187 -16.43766 -15.88706 -15.37185 -14.99225 -14.80686 -14.27256 -14.01660 -13.97451 -13.35644 -13.05625 -12.87773 -12.59286 -12.31056 -12.05863 -12.02726 -11.87073 -11.64926 -11.12066 -11.00423 -10.95586 -10.86152 -10.50915 -10.37690 -9.80444 -9.69807 -9.38272 -9.11840 -8.93228 -8.90516 -8.49929 -8.24912 -5.99951 -3.96249 0.76230 0.82748 3.10426 3.31812 3.39534 3.42302 3.57831 4.09279 4.33200 4.47968 4.54272 4.67459 4.78789 4.98791 5.08351 5.31186 5.33390 5.47918 5.58813 5.64045 5.70192 5.74097 5.85786 5.95303 6.10451 6.16852 6.22411 6.39445 6.43884 6.59093 6.67333 6.79425 7.05073 7.10412 7.16984 7.24179 7.25364 7.32040 7.43225 7.54471 7.85070 8.59765 9.06081 9.62991 11.13180 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.003096 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.642562 B = 9040.948321 C = 9256.324751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.680 5.680 15 C 0.094 3.906 16 C -0.030 4.030 17 C -0.132 4.132 18 C 0.134 3.866 19 O -0.493 6.493 20 C -0.186 4.186 21 C 0.115 3.885 22 F -0.138 7.138 23 C -0.158 4.158 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.342 0.658 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.139 0.861 39 H 0.393 0.607 40 H 0.139 0.861 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -1.365 25.070 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.049 4.049 3 C -0.189 4.189 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.312 5.312 15 C -0.035 4.035 16 C -0.031 4.031 17 C -0.151 4.151 18 C 0.089 3.911 19 O -0.304 6.304 20 C -0.206 4.206 21 C 0.096 3.904 22 F -0.116 7.116 23 C -0.177 4.177 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.156 0.844 39 H 0.250 0.750 40 H 0.157 0.843 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.325 -1.251 24.493 24.527 hybrid contribution 1.800 -0.697 0.192 1.940 sum 1.475 -1.948 24.684 24.805 Atomic orbital electron populations 1.21621 0.94453 1.00691 1.00797 1.20426 0.96278 0.95071 0.93162 1.21788 0.99589 0.96449 1.01038 1.19625 0.95798 0.95459 0.93289 1.21138 1.31458 1.13255 0.88683 0.90414 1.25019 0.95818 0.96744 0.96026 1.69910 1.46104 1.40663 0.97832 0.86844 0.81271 0.84053 0.77451 1.20436 1.21587 1.19206 1.22179 0.96412 0.98214 0.89329 1.60589 1.63613 1.06626 1.00413 1.20928 0.97209 0.98034 0.87348 1.19559 0.93479 0.94604 0.95448 1.21404 0.95622 1.01482 0.96565 1.18095 0.85097 0.94254 0.93629 1.84851 1.25928 1.61908 1.57689 1.21335 0.94424 1.01473 1.03347 1.17370 0.90674 0.87979 0.94411 1.91516 1.76950 1.57919 1.85237 1.21103 1.02219 0.97811 0.96591 0.93624 0.92105 0.94195 0.94124 0.91086 0.94576 0.96944 0.97133 0.92884 0.95673 0.91361 0.83798 0.89740 0.94123 0.84362 0.75043 0.84317 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.02 16 3 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 4 C 0.00 -0.09 3.11 -27.89 -0.09 -0.18 16 5 C -0.51 -13.91 8.20 -34.44 -0.28 -14.20 16 6 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.71 13.96 55.43 0.77 -26.94 16 9 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.07 1.04 4.65 -3.83 -0.02 1.02 16 14 N -0.68 -8.95 5.70 -115.06 -0.66 -9.60 16 15 C 0.09 0.99 5.81 -4.98 -0.03 0.96 16 16 C -0.03 -0.30 5.39 -104.66 -0.56 -0.87 16 17 C -0.13 -1.30 9.64 -39.42 -0.38 -1.68 16 18 C 0.13 1.27 6.70 -39.22 -0.26 1.00 16 19 O -0.49 -4.05 13.50 -19.41 -0.26 -4.31 16 20 C -0.19 -1.77 9.97 -39.37 -0.39 -2.16 16 21 C 0.12 1.19 7.30 -39.44 -0.29 0.90 16 22 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 23 C -0.16 -1.57 9.68 -39.49 -0.38 -1.96 16 24 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 25 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 29 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 30 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 31 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.34 4.48 6.76 -39.29 -0.27 4.22 16 36 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.39 1.15 9.06 45.56 0.41 1.57 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -31.19 336.26 -7.31 -38.50 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.32 Total: 2.25 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.28 Total: -20.45 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.12 Total: -36.54 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.26 Total: -4.31 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.19 -7.31 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342287506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.087 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds