Wall clock time and date at job start Tue Mar 31 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47668 * 2 1 4 4 C 1.50693 * 109.47334 * 120.00411 * 2 1 3 5 5 C 1.38241 * 120.00182 * 50.03411 * 4 2 1 6 6 C 1.38231 * 120.00301 * 179.97438 * 5 4 2 7 7 C 1.38236 * 120.00021 * 0.09367 * 6 5 4 8 8 C 1.38241 * 119.99911 * 0.02562 * 7 6 5 9 9 C 1.38233 * 120.00089 * 230.17248 * 4 2 1 10 10 N 1.46502 * 109.47021 * 240.00214 * 2 1 3 11 11 C 1.36936 * 120.00248 * 305.45603 * 10 2 1 12 12 H 1.07997 * 119.99498 * 319.76451 * 11 10 2 13 13 C 1.38816 * 120.00306 * 139.76542 * 11 10 2 14 14 N 1.31618 * 119.99584 * 348.84368 * 13 11 10 15 15 Si 1.86799 * 119.99994 * 168.84209 * 13 11 10 16 16 H 1.48504 * 109.47077 * 60.00098 * 15 13 11 17 17 H 1.48498 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47129 * 300.00125 * 15 13 11 19 19 C 1.46504 * 119.99987 * 125.45177 * 10 2 1 20 20 C 1.50706 * 109.46836 * 84.46657 * 19 10 2 21 21 C 1.38231 * 119.99892 * 270.81235 * 20 19 10 22 22 C 1.38241 * 119.99961 * 179.76206 * 21 20 19 23 23 C 1.38238 * 119.99860 * 0.51652 * 22 21 20 24 24 C 1.38239 * 119.99845 * 359.73696 * 23 22 21 25 25 C 1.38233 * 119.99819 * 91.08791 * 20 19 10 26 26 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47342 * 300.00109 * 1 2 3 28 28 H 1.09006 * 109.47236 * 59.99534 * 1 2 3 29 29 H 1.08000 * 119.99378 * 0.09143 * 5 4 2 30 30 H 1.07999 * 120.00241 * 180.36832 * 6 5 4 31 31 H 1.07999 * 119.99982 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.99596 * 179.97438 * 8 7 6 33 33 H 1.07994 * 120.00161 * 359.97415 * 9 4 2 34 34 H 0.97003 * 119.99428 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.47323 * 204.46232 * 19 10 2 36 36 H 1.08997 * 109.47246 * 324.46456 * 19 10 2 37 37 H 1.08002 * 120.00423 * 0.02562 * 21 20 19 38 38 H 1.07997 * 120.00168 * 180.23001 * 22 21 20 39 39 H 1.08000 * 119.99974 * 179.72119 * 23 22 21 40 40 H 1.07993 * 119.99743 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00447 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 1.5378 -1.9591 1.5579 6 6 1.9990 -2.6111 2.6862 7 6 2.9533 -2.0136 3.4881 8 6 3.4461 -0.7639 3.1620 9 6 2.9856 -0.1123 2.0330 10 7 2.0183 -0.6906 -1.1962 11 6 1.5980 -1.9646 -1.4709 12 1 1.4948 -2.6833 -0.6715 13 6 1.3044 -2.3322 -2.7769 14 7 1.2158 -1.4133 -3.7151 15 14 1.0354 -4.1310 -3.2029 16 1 -0.1071 -4.6605 -2.4157 17 1 0.7381 -4.2573 -4.6523 18 1 2.2606 -4.9050 -2.8790 19 6 2.9563 -0.0181 -2.0986 20 6 4.3620 -0.1951 -1.5849 21 6 4.8939 0.7212 -0.6971 22 6 6.1816 0.5562 -0.2221 23 6 6.9410 -0.5194 -0.6430 24 6 6.4109 -1.4329 -1.5349 25 6 5.1213 -1.2708 -2.0058 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7924 -2.4260 0.9311 30 1 1.6169 -3.5891 2.9388 31 1 3.3134 -2.5228 4.3699 32 1 4.1914 -0.2969 3.7887 33 1 3.3707 0.8639 1.7782 34 1 1.0110 -1.6703 -4.6278 35 1 2.8763 -0.4524 -3.0952 36 1 2.7175 1.0443 -2.1451 37 1 4.3020 1.5639 -0.3714 38 1 6.5958 1.2701 0.4744 39 1 7.9486 -0.6459 -0.2754 40 1 7.0043 -2.2730 -1.8641 41 1 4.7072 -1.9845 -2.7025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343011619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:34 Heat of formation + Delta-G solvation = 68.521060 kcal Electronic energy + Delta-G solvation = -22360.051656 eV Core-core repulsion = 19398.090573 eV Total energy + Delta-G solvation = -2961.961083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.00223 -38.31940 -35.86012 -32.56350 -31.49183 -30.38459 -30.13472 -29.43301 -28.00784 -25.57460 -23.85463 -22.10346 -21.92473 -21.76790 -20.33710 -19.47404 -17.08193 -16.04590 -15.65925 -15.18892 -14.78525 -14.45353 -14.24898 -14.20932 -13.57606 -13.33550 -13.10854 -12.84466 -12.70178 -12.29271 -12.14368 -11.95405 -11.44014 -11.36464 -11.15318 -10.95352 -10.79947 -10.68818 -10.53207 -10.33925 -10.27364 -9.89167 -9.85241 -9.77169 -8.54267 -8.32474 -8.21253 -8.09665 -7.89886 -6.56623 -5.81914 -3.45979 1.97919 2.02531 2.09467 2.13794 3.32795 3.38679 3.41128 4.32316 4.50328 4.54118 5.30328 5.37150 5.43915 5.49472 5.52450 5.56713 5.62675 5.68497 5.77069 5.94767 6.02929 6.13461 6.19373 6.21462 6.29207 6.40080 6.52959 6.58483 6.62393 6.71003 6.77060 6.84440 6.87526 7.04744 7.06853 7.11837 7.19430 7.23345 7.43813 7.47241 7.64936 7.69270 7.77778 7.83193 8.52324 9.15151 9.74128 10.33681 11.18011 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.009089 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.261469 B = 3080.034895 C = 4257.757638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.203 3.797 3 H 0.054 0.946 4 C -0.064 4.064 5 C -0.096 4.096 6 C -0.131 4.131 7 C -0.138 4.138 8 C -0.129 4.129 9 C -0.114 4.114 10 N -0.562 5.562 11 C -0.250 4.250 12 H 0.065 0.935 13 C 0.015 3.985 14 N -0.891 5.891 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.172 3.828 20 C -0.069 4.069 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.128 4.128 25 C -0.100 4.100 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.256 0.744 35 H 0.114 0.886 36 H 0.030 0.970 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.975 2.669 8.127 9.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.096 3.904 3 H 0.072 0.928 4 C -0.067 4.067 5 C -0.115 4.115 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.147 4.147 9 C -0.133 4.133 10 N -0.280 5.280 11 C -0.380 4.380 12 H 0.082 0.918 13 C -0.185 4.185 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.216 1.216 18 H -0.208 1.208 19 C 0.047 3.953 20 C -0.072 4.072 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.163 4.163 24 C -0.146 4.146 25 C -0.119 4.119 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.048 0.952 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.870 2.666 7.891 9.648 hybrid contribution 0.144 -1.158 -0.129 1.174 sum 5.015 1.507 7.762 9.363 Atomic orbital electron populations 1.22047 0.96674 1.02116 0.99387 1.19396 0.92769 0.93188 0.85034 0.92777 1.20780 0.94985 0.95208 0.95708 1.21267 1.00044 0.94740 0.95413 1.21092 0.98322 0.99545 0.95963 1.20914 0.98765 0.96010 0.99971 1.20938 1.00325 0.95654 0.97797 1.20960 0.97525 0.99798 0.95026 1.43724 1.46810 1.14389 1.23048 1.19078 1.38936 0.87353 0.92597 0.91752 1.25270 0.98639 0.97158 0.97428 1.69815 1.50479 1.31486 1.01603 0.86492 0.78446 0.85375 0.77216 1.20681 1.21561 1.20841 1.20204 0.81973 0.95193 0.97968 1.21296 0.98069 0.93009 0.94825 1.20969 0.95013 0.99535 0.98376 1.20936 0.95097 0.98087 1.00428 1.20852 0.99306 0.96251 0.99874 1.21059 0.96162 0.98890 0.98473 1.21084 0.93239 0.97681 0.99931 0.92035 0.94784 0.92700 0.85357 0.87161 0.87409 0.87351 0.87213 0.93379 0.86877 0.95170 0.87482 0.87545 0.87576 0.87397 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.77 37.16 0.33 -2.45 16 2 C 0.20 4.07 3.07 -69.09 -0.21 3.86 16 3 H 0.05 1.04 7.61 -51.93 -0.40 0.64 16 4 C -0.06 -1.23 4.97 -104.63 -0.52 -1.75 16 5 C -0.10 -1.83 7.80 -39.58 -0.31 -2.13 16 6 C -0.13 -2.21 10.05 -39.58 -0.40 -2.60 16 7 C -0.14 -2.17 10.05 -39.58 -0.40 -2.56 16 8 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 9 C -0.11 -1.98 9.67 -39.58 -0.38 -2.36 16 10 N -0.56 -12.85 2.34 -168.34 -0.39 -13.24 16 11 C -0.25 -6.24 7.81 -15.06 -0.12 -6.36 16 12 H 0.07 1.63 5.08 -52.49 -0.27 1.36 16 13 C 0.01 0.38 5.13 -17.43 -0.09 0.29 16 14 N -0.89 -23.90 11.12 55.49 0.62 -23.29 16 15 Si 0.90 20.76 29.57 -169.99 -5.03 15.74 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.17 3.86 5.29 -5.19 -0.03 3.83 16 20 C -0.07 -1.40 5.46 -104.62 -0.57 -1.98 16 21 C -0.12 -2.16 9.71 -39.58 -0.38 -2.54 16 22 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 23 C -0.14 -2.35 10.05 -39.58 -0.40 -2.74 16 24 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 25 C -0.10 -2.03 9.70 -39.58 -0.38 -2.41 16 26 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.13 2.55 5.33 -52.49 -0.28 2.27 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.76 7.97 -52.49 -0.42 1.34 16 34 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.11 2.86 5.33 -51.93 -0.28 2.59 16 36 H 0.03 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -26.79 336.62 -10.53 -37.31 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.74 Total: 7.87 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -5.06 Total: -29.47 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.22 Total: -36.53 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.79 -10.53 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343011619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.835 kcal (2) G-P(sol) polarization free energy of solvation -26.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds