Wall clock time and date at job start Tue Mar 31 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47284 * 2 1 4 4 C 1.50703 * 109.47088 * 240.00385 * 2 1 3 5 5 C 1.38233 * 119.99753 * 290.41771 * 4 2 1 6 6 C 1.38238 * 119.99931 * 179.81354 * 5 4 2 7 7 C 1.38233 * 120.00102 * 0.39539 * 6 5 4 8 8 C 1.38239 * 119.99609 * 359.85574 * 7 6 5 9 9 C 1.38233 * 120.00106 * 110.69610 * 4 2 1 10 10 N 1.46504 * 109.47358 * 120.00473 * 2 1 3 11 11 C 1.36936 * 119.99492 * 8.89320 * 10 2 1 12 12 H 1.07999 * 120.00476 * 40.51224 * 11 10 2 13 13 C 1.38813 * 119.99868 * 220.78230 * 11 10 2 14 14 N 1.31619 * 120.00080 * 213.16332 * 13 11 10 15 15 Si 1.86801 * 119.99971 * 33.16592 * 13 11 10 16 16 H 1.48492 * 109.47227 * 85.65806 * 15 13 11 17 17 H 1.48501 * 109.47174 * 205.66300 * 15 13 11 18 18 H 1.48503 * 109.46930 * 325.65774 * 15 13 11 19 19 C 1.46498 * 120.00221 * 188.89598 * 10 2 1 20 20 C 1.50692 * 109.47154 * 265.24817 * 19 10 2 21 21 C 1.38233 * 120.00221 * 269.72810 * 20 19 10 22 22 C 1.38233 * 119.99943 * 179.77070 * 21 20 19 23 23 C 1.38241 * 120.00100 * 0.49851 * 22 21 20 24 24 C 1.38232 * 119.99804 * 359.75597 * 23 22 21 25 25 C 1.38234 * 120.00178 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47195 * 182.76536 * 1 2 3 27 27 H 1.08997 * 109.46955 * 302.76874 * 1 2 3 28 28 H 1.09003 * 109.46892 * 62.76597 * 1 2 3 29 29 H 1.08001 * 120.00247 * 359.97438 * 5 4 2 30 30 H 1.07997 * 119.99908 * 180.23211 * 6 5 4 31 31 H 1.08001 * 120.00404 * 179.83949 * 7 6 5 32 32 H 1.08002 * 119.99589 * 179.97438 * 8 7 6 33 33 H 1.07994 * 120.00277 * 359.97195 * 9 4 2 34 34 H 0.96995 * 119.99716 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.46727 * 25.25065 * 19 10 2 36 36 H 1.09001 * 109.46764 * 145.24666 * 19 10 2 37 37 H 1.08002 * 119.99701 * 359.97438 * 21 20 19 38 38 H 1.07999 * 120.00214 * 180.23259 * 22 21 20 39 39 H 1.08001 * 119.99997 * 179.72448 * 23 22 21 40 40 H 1.07999 * 120.00282 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.00414 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.8689 -2.0774 -1.3545 6 6 2.3263 -2.7284 -2.4850 7 6 2.9543 -2.0137 -3.4878 8 6 3.1223 -0.6474 -3.3614 9 6 2.6616 0.0042 -2.2326 10 7 2.0184 -0.6907 1.1961 11 6 1.1419 -1.3676 2.0016 12 1 0.3484 -1.9545 1.5632 13 6 1.2700 -1.2948 3.3819 14 7 0.9507 -2.3311 4.1280 15 14 1.8953 0.2738 4.1806 16 1 0.7604 1.2074 4.3932 17 1 2.5204 -0.0514 5.4877 18 1 2.9024 0.9123 3.2955 19 6 3.4443 -0.6572 1.5305 20 6 4.1188 -1.8862 0.9778 21 6 4.2075 -3.0311 1.7474 22 6 4.8221 -4.1600 1.2386 23 6 5.3571 -4.1407 -0.0359 24 6 5.2731 -2.9942 -0.8035 25 6 4.6536 -1.8671 -0.2968 26 1 -0.3633 -1.0264 0.0496 27 1 -0.3633 0.5562 0.8641 28 1 -0.3633 0.4703 -0.9138 29 1 1.3817 -2.6364 -0.5694 30 1 2.1953 -3.7959 -2.5835 31 1 3.3139 -2.5227 -4.3698 32 1 3.6133 -0.0890 -4.1447 33 1 2.7929 1.0716 -2.1340 34 1 1.0406 -2.2804 5.0924 35 1 3.8986 0.2332 1.0957 36 1 3.5630 -0.6336 2.6137 37 1 3.7937 -3.0446 2.7449 38 1 4.8881 -5.0557 1.8384 39 1 5.8412 -5.0213 -0.4317 40 1 5.6914 -2.9789 -1.7991 41 1 4.5883 -0.9711 -0.8964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343011620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:37 Heat of formation + Delta-G solvation = 79.317053 kcal Electronic energy + Delta-G solvation = -22780.389599 eV Core-core repulsion = 19818.896665 eV Total energy + Delta-G solvation = -2961.492933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.33542 -38.10973 -36.12326 -32.53249 -31.72186 -30.40492 -30.14787 -29.86591 -28.17919 -25.51817 -24.00119 -22.19794 -21.82635 -21.75929 -20.54303 -19.45884 -16.89769 -16.25501 -15.81203 -15.23819 -14.89729 -14.76786 -14.41059 -14.14891 -13.70150 -13.34494 -13.02006 -12.82580 -12.69870 -12.56425 -12.21737 -12.10651 -11.85991 -11.44687 -11.27432 -11.00232 -10.90534 -10.68087 -10.58586 -10.37322 -10.17926 -10.08387 -9.84301 -9.57638 -8.51954 -8.45208 -8.24842 -8.07214 -7.80328 -6.79548 -6.11278 -3.42321 1.87555 1.94456 2.11094 2.18758 3.35041 3.46773 3.51189 4.30688 4.48579 4.54079 5.05888 5.27383 5.36691 5.39650 5.46435 5.54356 5.58011 5.67933 5.70353 5.89554 5.98943 6.05670 6.13297 6.15633 6.20859 6.26104 6.40631 6.43386 6.50123 6.62442 6.64214 6.78131 6.78581 6.86245 6.94876 7.01183 7.11054 7.17445 7.24672 7.35324 7.54436 7.56485 7.77559 7.99347 8.38409 8.96400 9.67782 10.12855 11.03316 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.008823 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.809024 B = 3172.773993 C = 4218.627479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.201 3.799 3 H 0.039 0.961 4 C -0.077 4.077 5 C -0.074 4.074 6 C -0.120 4.120 7 C -0.132 4.132 8 C -0.130 4.130 9 C -0.129 4.129 10 N -0.583 5.583 11 C -0.271 4.271 12 H 0.076 0.924 13 C 0.054 3.946 14 N -0.875 5.875 15 Si 0.844 3.156 16 H -0.288 1.288 17 H -0.297 1.297 18 H -0.262 1.262 19 C 0.180 3.820 20 C -0.077 4.077 21 C -0.090 4.090 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.127 4.127 25 C -0.104 4.104 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.263 0.737 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 1.322 -11.000 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.095 3.905 3 H 0.057 0.943 4 C -0.079 4.079 5 C -0.092 4.092 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.147 4.147 10 N -0.305 5.305 11 C -0.399 4.399 12 H 0.093 0.907 13 C -0.149 4.149 14 N -0.514 5.514 15 Si 0.671 3.329 16 H -0.216 1.216 17 H -0.224 1.224 18 H -0.187 1.187 19 C 0.055 3.945 20 C -0.079 4.079 21 C -0.108 4.108 22 C -0.148 4.148 23 C -0.157 4.157 24 C -0.145 4.145 25 C -0.123 4.123 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.653 1.263 -10.788 12.245 hybrid contribution 0.357 0.641 0.511 0.894 sum 6.010 1.904 -10.277 12.057 Atomic orbital electron populations 1.21762 0.94265 1.02705 0.99820 1.19515 0.93895 0.92672 0.84447 0.94306 1.20864 0.96315 0.94559 0.96142 1.21026 0.97606 0.94266 0.96343 1.21043 0.99152 0.99156 0.94440 1.20906 1.00992 0.94323 0.98849 1.20914 1.01437 0.94635 0.97861 1.20980 1.00083 0.99251 0.94410 1.44108 1.01177 1.59839 1.25331 1.18486 1.11813 1.23137 0.86485 0.90690 1.25473 0.96916 0.96202 0.96325 1.70061 1.48252 1.27456 1.05605 0.87509 0.79011 0.87727 0.78650 1.21566 1.22355 1.18669 1.20233 0.84210 0.91752 0.98350 1.20808 0.95014 0.98059 0.94061 1.21128 0.96803 0.92354 1.00551 1.21035 0.99741 0.98154 0.95829 1.20880 1.02025 0.97694 0.95096 1.20851 1.01055 0.93772 0.98827 1.20980 0.98051 0.98018 0.95269 0.91725 0.92004 0.94230 0.85827 0.87326 0.87445 0.87325 0.87105 0.92719 0.93832 0.92210 0.85913 0.87301 0.87661 0.87761 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.11 37.16 0.30 -2.04 16 2 C 0.20 3.80 3.12 -69.08 -0.22 3.58 16 3 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 4 C -0.08 -1.32 2.99 -104.62 -0.31 -1.63 16 5 C -0.07 -1.32 7.18 -39.58 -0.28 -1.61 16 6 C -0.12 -1.88 9.83 -39.58 -0.39 -2.27 16 7 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 8 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 9 C -0.13 -1.94 8.46 -39.58 -0.34 -2.28 16 10 N -0.58 -12.70 1.72 -168.34 -0.29 -12.99 16 11 C -0.27 -6.83 8.30 -15.06 -0.12 -6.95 16 12 H 0.08 2.06 6.76 -52.49 -0.35 1.71 16 13 C 0.05 1.42 5.08 -17.43 -0.09 1.33 16 14 N -0.88 -24.76 13.97 55.49 0.78 -23.99 16 15 Si 0.84 20.42 26.60 -169.99 -4.52 15.90 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 18 H -0.26 -6.04 5.69 56.52 0.32 -5.72 16 19 C 0.18 3.80 4.29 -5.20 -0.02 3.77 16 20 C -0.08 -1.52 4.83 -104.63 -0.51 -2.03 16 21 C -0.09 -1.82 9.70 -39.58 -0.38 -2.21 16 22 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 23 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 24 C -0.13 -2.07 10.05 -39.59 -0.40 -2.47 16 25 C -0.10 -1.86 6.81 -39.58 -0.27 -2.13 16 26 H 0.06 1.27 6.64 -51.93 -0.34 0.92 16 27 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.12 2.57 7.92 -52.49 -0.42 2.15 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.11 1.51 7.97 -52.49 -0.42 1.09 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 36 H 0.06 1.36 4.37 -51.93 -0.23 1.13 16 37 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.91 6.24 -52.49 -0.33 1.59 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -26.95 327.84 -9.64 -36.59 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.93 Total: 6.25 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -4.62 Total: -26.70 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.49 Total: -36.98 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.52 Total: 15.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.95 -9.64 -36.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343011620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.906 kcal (2) G-P(sol) polarization free energy of solvation -26.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds