Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 C 1.53000 * 109.46733 * 240.00422 * 2 1 3 5 5 C 1.52994 * 109.47209 * 120.00275 * 2 1 3 6 6 H 1.09003 * 109.47314 * 293.28843 * 5 2 1 7 7 C 1.53005 * 109.47283 * 53.29153 * 5 2 1 8 8 O 1.42892 * 109.47074 * 56.90384 * 7 5 2 9 9 C 1.35961 * 116.99762 * 179.97438 * 8 7 5 10 10 C 1.38662 * 120.06227 * 0.02562 * 9 8 7 11 11 C 1.38179 * 119.96802 * 179.74478 * 10 9 8 12 12 C 1.38269 * 120.09547 * 0.25181 * 11 10 9 13 13 C 1.38261 * 120.12477 * 0.02562 * 12 11 10 14 14 C 1.38325 * 120.02887 * 359.97285 * 13 12 11 15 15 F 1.35102 * 120.04551 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46892 * 173.28896 * 5 2 1 17 17 C 1.36937 * 120.00259 * 85.00358 * 16 5 2 18 18 H 1.08001 * 119.99667 * 359.97438 * 17 16 5 19 19 C 1.38809 * 120.00149 * 179.97438 * 17 16 5 20 20 N 1.31616 * 120.00241 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99849 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47062 * 119.99921 * 21 19 17 24 24 H 1.48499 * 109.46820 * 239.99597 * 21 19 17 25 25 H 1.09008 * 109.47280 * 299.99837 * 1 2 3 26 26 H 1.08999 * 109.47395 * 59.99784 * 1 2 3 27 27 H 1.08997 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46880 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47808 * 299.99804 * 3 2 1 30 30 H 1.08997 * 109.47518 * 60.00508 * 3 2 1 31 31 H 1.09003 * 109.47137 * 313.53463 * 4 2 1 32 32 H 1.09005 * 109.47610 * 73.53808 * 4 2 1 33 33 H 1.09006 * 109.46790 * 193.53721 * 4 2 1 34 34 H 1.09005 * 109.46491 * 296.90836 * 7 5 2 35 35 H 1.08996 * 109.47222 * 176.91349 * 7 5 2 36 36 H 1.07997 * 120.01438 * 0.02562 * 10 9 8 37 37 H 1.07991 * 119.95414 * 180.23406 * 11 10 9 38 38 H 1.08002 * 119.93574 * 179.97438 * 12 11 10 39 39 H 1.07992 * 119.98279 * 180.02562 * 13 12 11 40 40 H 0.97002 * 119.99835 * 264.99228 * 16 5 2 41 41 H 0.96999 * 120.00179 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.7781 -0.1429 2.1351 7 6 1.3971 -2.1070 1.3362 8 8 1.6806 -2.8394 0.1426 9 6 1.1786 -4.1002 0.0581 10 6 0.4287 -4.6206 1.1019 11 6 -0.0850 -5.9002 1.0118 12 6 0.1520 -6.6646 -0.1157 13 6 0.9040 -6.1517 -1.1564 14 6 1.4207 -4.8714 -1.0716 15 9 2.1560 -4.3700 -2.0881 16 7 3.4961 -0.8626 1.1711 17 6 4.3066 0.1585 1.5901 18 1 3.8723 1.0683 1.9777 19 6 5.6862 0.0244 1.5166 20 7 6.2154 -1.0844 1.0447 21 14 6.7918 1.4177 2.0875 22 1 5.9563 2.5463 2.5708 23 1 7.6629 0.9382 3.1905 24 1 7.6350 1.8764 0.9545 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.4936 -1.6556 -1.3779 32 1 1.8864 -0.0875 -2.1229 33 1 3.1030 -0.9343 -1.1373 34 1 0.3182 -2.0003 1.4495 35 1 1.8015 -2.6418 2.1956 36 1 0.2424 -4.0244 1.9830 37 1 -0.6721 -6.3039 1.8233 38 1 -0.2504 -7.6646 -0.1832 39 1 1.0874 -6.7506 -2.0361 40 1 3.8861 -1.6796 0.8228 41 1 7.1795 -1.1783 0.9937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343607782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = -50.313490 kcal Electronic energy + Delta-G solvation = -23134.208456 eV Core-core repulsion = 19736.325096 eV Total energy + Delta-G solvation = -3397.883360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.50720 -39.97960 -38.14731 -36.44246 -33.33641 -30.95612 -30.63315 -29.76784 -28.20238 -26.43840 -26.19319 -24.12330 -22.73195 -22.33155 -21.35386 -18.37609 -17.93715 -17.16464 -16.79927 -16.35748 -15.98944 -15.10048 -15.00183 -14.53237 -14.25961 -14.03066 -13.84314 -13.63320 -13.04299 -12.97571 -12.57695 -12.40540 -12.10343 -11.85290 -11.65273 -11.48720 -11.16542 -11.05680 -10.93619 -10.84393 -10.76855 -10.48928 -10.18541 -10.04064 -10.00001 -9.66891 -9.37206 -8.90041 -8.82021 -7.99460 -6.91863 -5.73540 -3.01831 1.16870 1.35185 3.38798 3.44925 3.49741 3.52093 3.64276 4.39293 4.59798 4.76311 4.84833 5.18576 5.22860 5.30606 5.38920 5.44430 5.53802 5.61865 5.69506 5.74343 5.88074 6.03069 6.08416 6.16780 6.18790 6.22107 6.31917 6.38859 6.45515 6.49020 6.50833 6.58530 6.74824 6.93447 6.95166 7.03901 7.34638 7.44274 7.61203 7.72667 8.43798 9.55997 10.12519 10.49073 11.48523 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.005302 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.230862 B = 5279.698041 C = 5826.027434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.130 4.130 5 C 0.190 3.810 6 H 0.064 0.936 7 C 0.050 3.950 8 O -0.276 6.276 9 C 0.107 3.893 10 C -0.188 4.188 11 C -0.092 4.092 12 C -0.142 4.142 13 C -0.120 4.120 14 C 0.064 3.936 15 F -0.130 7.130 16 N -0.714 5.714 17 C -0.236 4.236 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.928 5.928 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.292 1.292 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.389 0.611 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.958 -7.757 -1.344 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.187 4.187 5 C 0.080 3.920 6 H 0.082 0.918 7 C -0.026 4.026 8 O -0.189 6.189 9 C 0.059 3.941 10 C -0.207 4.207 11 C -0.110 4.110 12 C -0.161 4.161 13 C -0.139 4.139 14 C 0.044 3.956 15 F -0.109 7.109 16 N -0.355 5.355 17 C -0.367 4.367 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.224 0.776 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.700 -7.454 -1.432 16.544 hybrid contribution 0.810 0.570 0.198 1.009 sum -13.891 -6.884 -1.234 15.552 Atomic orbital electron populations 1.21975 0.96800 1.00517 1.00574 1.21149 0.92901 0.96482 0.98155 1.21879 1.04039 0.94541 0.98880 1.21867 1.03453 0.98642 0.94729 1.20392 0.86361 0.89564 0.95725 0.91788 1.23529 0.99466 0.93982 0.85610 1.86550 1.70754 1.21319 1.40231 1.19279 0.94569 0.86690 0.93542 1.21209 1.02498 0.97845 0.99144 1.20966 0.98721 0.93479 0.97858 1.20819 1.01023 1.00439 0.93789 1.20977 0.98901 0.93358 1.00628 1.17047 0.99520 0.93090 0.85897 1.91527 1.74706 1.87481 1.57167 1.42401 0.98247 1.19213 1.75636 1.19251 0.87756 0.95565 1.34107 0.90921 1.24725 0.96744 0.97256 1.02047 1.69683 1.10591 1.25663 1.51635 0.86205 0.81047 0.81593 0.77884 1.20574 1.22002 1.21949 0.93554 0.93617 0.93398 0.89755 0.94854 0.94330 0.92309 0.95353 0.90883 0.92092 0.91892 0.84637 0.85529 0.85372 0.84542 0.77571 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.89 37.16 0.29 -1.79 16 2 C -0.08 -1.50 0.62 -154.51 -0.10 -1.60 16 3 C -0.14 -2.54 7.76 37.16 0.29 -2.25 16 4 C -0.13 -2.53 7.48 37.16 0.28 -2.25 16 5 C 0.19 3.64 2.25 -67.93 -0.15 3.49 16 6 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 7 C 0.05 0.81 3.83 37.16 0.14 0.95 16 8 O -0.28 -4.92 5.99 -19.62 -0.12 -5.03 16 9 C 0.11 1.69 6.69 -39.18 -0.26 1.43 16 10 C -0.19 -2.42 9.04 -39.45 -0.36 -2.77 16 11 C -0.09 -0.98 10.04 -39.59 -0.40 -1.38 16 12 C -0.14 -1.48 10.04 -39.56 -0.40 -1.87 16 13 C -0.12 -1.46 10.02 -39.54 -0.40 -1.85 16 14 C 0.06 1.01 7.31 -39.30 -0.29 0.72 16 15 F -0.13 -2.32 17.11 2.25 0.04 -2.28 16 16 N -0.71 -17.21 3.89 -53.43 -0.21 -17.42 16 17 C -0.24 -6.24 7.83 -15.06 -0.12 -6.36 16 18 H 0.07 1.87 7.30 -52.49 -0.38 1.49 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 21 Si 0.90 22.19 29.55 -169.99 -5.02 17.16 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.68 6.40 -51.93 -0.33 0.35 16 28 H 0.08 1.85 5.99 -51.93 -0.31 1.54 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.12 5.73 -51.93 -0.30 0.82 16 32 H 0.03 0.51 8.07 -51.93 -0.42 0.10 16 33 H 0.07 1.69 6.88 -51.93 -0.36 1.33 16 34 H 0.06 0.83 6.04 -51.93 -0.31 0.51 16 35 H 0.06 1.03 7.66 -51.93 -0.40 0.63 16 36 H 0.14 1.54 6.30 -52.49 -0.33 1.21 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.39 10.41 7.32 -40.82 -0.30 10.11 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -29.86 328.05 -7.16 -37.02 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.96 Total: 8.77 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.56 Total: -15.97 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.52 Total: -44.61 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.12 Total: -5.03 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.86 -7.16 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343607782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.294 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds