Wall clock time and date at job start Tue Mar 31 2020 05:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 C 1.53000 * 109.46733 * 240.00422 * 2 1 3 5 5 C 1.52994 * 109.47209 * 120.00275 * 2 1 3 6 6 H 1.09003 * 109.47314 * 293.28843 * 5 2 1 7 7 C 1.53005 * 109.47283 * 53.29153 * 5 2 1 8 8 O 1.42892 * 109.47074 * 56.90384 * 7 5 2 9 9 C 1.35961 * 116.99762 * 179.97438 * 8 7 5 10 10 C 1.38662 * 120.06227 * 0.02562 * 9 8 7 11 11 C 1.38179 * 119.96802 * 179.74478 * 10 9 8 12 12 C 1.38269 * 120.09547 * 0.25181 * 11 10 9 13 13 C 1.38261 * 120.12477 * 0.02562 * 12 11 10 14 14 C 1.38325 * 120.02887 * 359.97285 * 13 12 11 15 15 F 1.35102 * 120.04551 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46892 * 173.28896 * 5 2 1 17 17 C 1.36937 * 120.00259 * 85.00358 * 16 5 2 18 18 H 1.08001 * 119.99667 * 359.97438 * 17 16 5 19 19 C 1.38809 * 120.00149 * 179.97438 * 17 16 5 20 20 N 1.31616 * 120.00241 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99849 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47062 * 119.99921 * 21 19 17 24 24 H 1.48499 * 109.46820 * 239.99597 * 21 19 17 25 25 H 1.09008 * 109.47280 * 299.99837 * 1 2 3 26 26 H 1.08999 * 109.47395 * 59.99784 * 1 2 3 27 27 H 1.08997 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46880 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47808 * 299.99804 * 3 2 1 30 30 H 1.08997 * 109.47518 * 60.00508 * 3 2 1 31 31 H 1.09003 * 109.47137 * 313.53463 * 4 2 1 32 32 H 1.09005 * 109.47610 * 73.53808 * 4 2 1 33 33 H 1.09006 * 109.46790 * 193.53721 * 4 2 1 34 34 H 1.09005 * 109.46491 * 296.90836 * 7 5 2 35 35 H 1.08996 * 109.47222 * 176.91349 * 7 5 2 36 36 H 1.07997 * 120.01438 * 0.02562 * 10 9 8 37 37 H 1.07991 * 119.95414 * 180.23406 * 11 10 9 38 38 H 1.08002 * 119.93574 * 179.97438 * 12 11 10 39 39 H 1.07992 * 119.98279 * 180.02562 * 13 12 11 40 40 H 0.97002 * 119.99835 * 264.99228 * 16 5 2 41 41 H 0.96999 * 120.00179 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.7781 -0.1429 2.1351 7 6 1.3971 -2.1070 1.3362 8 8 1.6806 -2.8394 0.1426 9 6 1.1786 -4.1002 0.0581 10 6 0.4287 -4.6206 1.1019 11 6 -0.0850 -5.9002 1.0118 12 6 0.1520 -6.6646 -0.1157 13 6 0.9040 -6.1517 -1.1564 14 6 1.4207 -4.8714 -1.0716 15 9 2.1560 -4.3700 -2.0881 16 7 3.4961 -0.8626 1.1711 17 6 4.3066 0.1585 1.5901 18 1 3.8723 1.0683 1.9777 19 6 5.6862 0.0244 1.5166 20 7 6.2154 -1.0844 1.0447 21 14 6.7918 1.4177 2.0875 22 1 5.9563 2.5463 2.5708 23 1 7.6629 0.9382 3.1905 24 1 7.6350 1.8764 0.9545 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.4936 -1.6556 -1.3779 32 1 1.8864 -0.0875 -2.1229 33 1 3.1030 -0.9343 -1.1373 34 1 0.3182 -2.0003 1.4495 35 1 1.8015 -2.6418 2.1956 36 1 0.2424 -4.0244 1.9830 37 1 -0.6721 -6.3039 1.8233 38 1 -0.2504 -7.6646 -0.1832 39 1 1.0874 -6.7506 -2.0361 40 1 3.8861 -1.6796 0.8228 41 1 7.1795 -1.1783 0.9937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343607782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:06 Heat of formation + Delta-G solvation = -67.085808 kcal Electronic energy + Delta-G solvation = -23134.935759 eV Core-core repulsion = 19736.325096 eV Total energy + Delta-G solvation = -3398.610663 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.73487 -41.16129 -39.40647 -37.70556 -35.23187 -32.67742 -31.59743 -31.03422 -29.60910 -27.99450 -27.59993 -25.80605 -24.17923 -23.34959 -22.66818 -19.66751 -19.29462 -19.07154 -17.92068 -17.58759 -17.23934 -16.57964 -16.23512 -15.87736 -15.61652 -15.40511 -15.28334 -15.18081 -14.63955 -14.24872 -13.94517 -13.67145 -13.40062 -13.06163 -12.95197 -12.89657 -12.79533 -12.61474 -12.43518 -12.33594 -12.15031 -12.00898 -11.95357 -11.75598 -11.53881 -11.17399 -11.09557 -10.75045 -9.86431 -9.07554 -8.91588 -7.87210 -5.13551 0.20623 0.37659 1.46749 1.47789 1.56819 2.23960 2.59128 2.69530 3.36175 3.45999 3.78912 3.87544 3.93860 4.05914 4.11139 4.27855 4.29920 4.38872 4.43014 4.54904 4.58398 4.59962 4.83707 4.92762 4.98959 5.00488 5.08021 5.10876 5.16741 5.23629 5.32364 5.33378 5.43808 5.48584 5.53697 5.57571 5.77480 5.81291 5.87088 6.32995 6.47555 7.40242 8.16046 8.39681 9.36820 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.005302 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.230862 B = 5279.698041 C = 5826.027434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C -0.133 4.133 4 C -0.118 4.118 5 C 0.181 3.819 6 H 0.073 0.927 7 C 0.057 3.943 8 O -0.305 6.305 9 C 0.076 3.924 10 C -0.191 4.191 11 C -0.083 4.083 12 C -0.131 4.131 13 C -0.119 4.119 14 C 0.023 3.977 15 F -0.156 7.156 16 N -0.724 5.724 17 C -0.214 4.214 18 H 0.082 0.918 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.962 3.038 22 H -0.263 1.263 23 H -0.298 1.298 24 H -0.302 1.302 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.156 0.844 40 H 0.373 0.627 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.237 -8.361 -0.164 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.083 4.083 3 C -0.190 4.190 4 C -0.175 4.175 5 C 0.073 3.927 6 H 0.090 0.910 7 C -0.018 4.018 8 O -0.219 6.219 9 C 0.029 3.971 10 C -0.210 4.210 11 C -0.101 4.101 12 C -0.149 4.149 13 C -0.137 4.137 14 C 0.003 3.997 15 F -0.135 7.135 16 N -0.363 5.363 17 C -0.346 4.346 18 H 0.100 0.900 19 C -0.272 4.272 20 N -0.625 5.625 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.225 1.225 24 H -0.230 1.230 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.205 0.795 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.048 -8.032 -0.237 19.756 hybrid contribution 1.669 0.650 -0.187 1.801 sum -16.379 -7.382 -0.424 17.971 Atomic orbital electron populations 1.21866 0.93441 1.01554 1.02085 1.21059 0.95490 0.95401 0.96311 1.21816 1.01374 0.95464 1.00376 1.21723 1.00517 0.99232 0.96040 1.20676 0.83679 0.91955 0.96440 0.90968 1.23369 1.00981 0.92175 0.85290 1.86467 1.71975 1.22769 1.40643 1.19576 0.96333 0.86261 0.94889 1.21468 1.01887 0.99073 0.98572 1.21458 0.97568 0.92292 0.98785 1.21326 0.99158 1.01813 0.92557 1.21318 0.98331 0.92028 1.02064 1.17624 1.01242 0.94850 0.85968 1.91449 1.75705 1.88060 1.58301 1.42562 1.00485 1.17923 1.75337 1.19618 0.88037 0.95830 1.31129 0.90030 1.25449 0.98390 0.99446 1.03902 1.69854 1.10043 1.27917 1.54658 0.85223 0.79227 0.79559 0.76751 1.18680 1.22526 1.22974 0.91502 0.92671 0.92612 0.93754 0.93306 0.92877 0.92022 0.94815 0.95439 0.88616 0.92378 0.83295 0.81794 0.81500 0.82673 0.79547 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 7.89 71.98 0.57 -2.93 16 2 C -0.08 -2.79 0.62 -52.18 -0.03 -2.82 16 3 C -0.13 -4.82 7.76 71.98 0.56 -4.26 16 4 C -0.12 -4.71 7.48 71.98 0.54 -4.17 16 5 C 0.18 6.84 2.25 44.99 0.10 6.94 16 6 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 7 C 0.06 1.81 3.83 71.98 0.28 2.09 16 8 O -0.30 -11.04 5.99 -93.11 -0.56 -11.60 16 9 C 0.08 2.39 6.69 22.53 0.15 2.54 16 10 C -0.19 -4.48 9.04 22.36 0.20 -4.28 16 11 C -0.08 -1.44 10.04 22.26 0.22 -1.22 16 12 C -0.13 -2.21 10.04 22.28 0.22 -1.98 16 13 C -0.12 -2.70 10.02 22.30 0.22 -2.48 16 14 C 0.02 0.72 7.31 22.45 0.16 0.89 16 15 F -0.16 -5.92 17.11 44.97 0.77 -5.15 16 16 N -0.72 -35.93 3.89 -322.94 -1.26 -37.18 16 17 C -0.21 -11.56 7.83 84.03 0.66 -10.90 16 18 H 0.08 4.18 7.30 -2.91 -0.02 4.16 16 19 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 20 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 21 Si 0.96 46.88 29.55 68.60 2.03 48.91 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 25 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.40 6.40 -2.39 -0.02 1.39 16 28 H 0.04 1.95 5.99 -2.38 -0.01 1.94 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 2.42 5.73 -2.39 -0.01 2.40 16 32 H 0.03 1.25 8.07 -2.38 -0.02 1.23 16 33 H 0.03 1.32 6.88 -2.38 -0.02 1.30 16 34 H 0.10 2.33 6.04 -2.38 -0.01 2.31 16 35 H 0.06 1.87 7.66 -2.39 -0.02 1.85 16 36 H 0.15 2.97 6.30 -2.91 -0.02 2.95 16 37 H 0.16 1.64 8.06 -2.92 -0.02 1.61 16 38 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 40 H 0.37 20.99 7.32 -92.71 -0.68 20.31 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.22 328.05 5.94 -63.28 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.35 Total: 29.57 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.32 Total: -26.77 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -0.97 Total: -98.24 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.56 Total: -11.60 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.77 Total: -5.15 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -69.22 5.94 -63.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343607782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.808 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds