Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99946 * 2 1 3 5 5 C 1.53005 * 109.47127 * 119.99686 * 2 1 3 6 6 H 1.08996 * 109.46960 * 186.44882 * 5 2 1 7 7 C 1.52995 * 109.46702 * 66.44977 * 5 2 1 8 8 O 1.42898 * 109.47385 * 301.98431 * 7 5 2 9 9 C 1.35959 * 117.00196 * 180.02562 * 8 7 5 10 10 C 1.38670 * 120.06010 * 359.97438 * 9 8 7 11 11 C 1.38181 * 119.96750 * 180.29699 * 10 9 8 12 12 C 1.38262 * 120.09367 * 359.45240 * 11 10 9 13 13 C 1.38261 * 120.12559 * 0.55221 * 12 11 10 14 14 C 1.38331 * 120.03207 * 359.72237 * 13 12 11 15 15 F 1.35098 * 120.04863 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.46840 * 306.45303 * 5 2 1 17 17 C 1.36936 * 119.99788 * 274.99322 * 16 5 2 18 18 H 1.08002 * 120.00087 * 0.02562 * 17 16 5 19 19 C 1.38809 * 119.99863 * 180.02562 * 17 16 5 20 20 N 1.31621 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99869 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47113 * 90.00278 * 21 19 17 23 23 H 1.48499 * 109.46890 * 209.99918 * 21 19 17 24 24 H 1.48489 * 109.47188 * 329.99794 * 21 19 17 25 25 H 1.09001 * 109.47638 * 289.04063 * 1 2 3 26 26 H 1.09005 * 109.47188 * 49.03860 * 1 2 3 27 27 H 1.09001 * 109.47181 * 169.03503 * 1 2 3 28 28 H 1.09004 * 109.46922 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46902 * 299.99862 * 3 2 1 30 30 H 1.09003 * 109.47314 * 59.99675 * 3 2 1 31 31 H 1.08999 * 109.46864 * 300.00077 * 4 2 1 32 32 H 1.09001 * 109.47121 * 59.99789 * 4 2 1 33 33 H 1.09004 * 109.47484 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47314 * 181.98480 * 7 5 2 35 35 H 1.09002 * 109.47675 * 61.99093 * 7 5 2 36 36 H 1.07997 * 120.01378 * 0.03433 * 10 9 8 37 37 H 1.07996 * 119.95005 * 179.70408 * 11 10 9 38 38 H 1.08000 * 119.93537 * 180.27022 * 12 11 10 39 39 H 1.07998 * 119.98002 * 179.74091 * 13 12 11 40 40 H 0.97001 * 119.99810 * 94.99900 * 16 5 2 41 41 H 0.96995 * 119.99800 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1238 -0.6223 1.3089 7 6 1.6665 -2.2028 1.1709 8 8 0.2487 -2.3308 1.0462 9 6 -0.2524 -3.5920 0.9645 10 6 0.6027 -4.6830 1.0029 11 6 0.0919 -5.9638 0.9134 12 6 -1.2718 -6.1598 0.7970 13 6 -2.1279 -5.0748 0.7583 14 6 -1.6217 -3.7901 0.8417 15 9 -2.4580 -2.7297 0.8044 16 7 1.4289 -0.1259 2.4404 17 6 1.9876 0.9850 3.0139 18 1 2.8784 1.4225 2.5879 19 6 1.4090 1.5487 4.1427 20 7 0.3231 1.0157 4.6615 21 14 2.1708 3.0646 4.9246 22 1 1.5805 4.2844 4.3173 23 1 1.8996 3.0577 6.3846 24 1 3.6375 3.0566 4.6936 25 1 -0.3634 0.3353 0.9714 26 1 -0.3634 0.6737 -0.7761 27 1 -0.3633 -1.0089 -0.1955 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 1.9988 -2.7097 2.0769 35 1 2.1497 -2.6540 0.3043 36 1 1.6677 -4.5316 1.0984 37 1 0.7585 -6.8132 0.9386 38 1 -1.6687 -7.1621 0.7317 39 1 -3.1924 -5.2304 0.6631 40 1 0.6287 -0.5188 2.8227 41 1 -0.0809 1.4095 5.4505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343607784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -50.040188 kcal Electronic energy + Delta-G solvation = -23133.175685 eV Core-core repulsion = 19735.304176 eV Total energy + Delta-G solvation = -3397.871509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.50534 -39.98017 -38.14585 -36.44261 -33.33254 -30.95300 -30.63151 -29.76462 -28.20483 -26.44227 -26.18943 -24.12178 -22.72993 -22.33170 -21.34814 -18.37368 -17.93867 -17.15830 -16.79934 -16.36097 -15.99306 -15.10046 -15.00227 -14.53383 -14.25890 -14.02931 -13.83935 -13.63455 -13.03977 -12.96981 -12.57763 -12.39929 -12.10306 -11.85788 -11.65010 -11.48746 -11.16682 -11.04895 -10.92922 -10.84712 -10.77571 -10.48431 -10.18312 -10.04199 -10.01801 -9.66886 -9.36966 -8.89841 -8.81066 -7.99114 -6.91436 -5.72988 -3.01308 1.16977 1.35339 3.38772 3.45348 3.49842 3.51566 3.64396 4.39441 4.60160 4.76427 4.84878 5.18596 5.22938 5.30355 5.39036 5.44706 5.53908 5.61780 5.69426 5.74694 5.87846 6.03186 6.08549 6.16851 6.18629 6.22058 6.32018 6.38947 6.45507 6.49044 6.51099 6.57991 6.74937 6.93973 6.95153 7.03683 7.34817 7.43772 7.61202 7.72445 8.44377 9.56483 10.13089 10.49750 11.48987 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.005319 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.720684 B = 5262.783977 C = 5821.059478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.190 3.810 6 H 0.064 0.936 7 C 0.050 3.950 8 O -0.276 6.276 9 C 0.107 3.893 10 C -0.188 4.188 11 C -0.092 4.092 12 C -0.142 4.142 13 C -0.120 4.120 14 C 0.064 3.936 15 F -0.130 7.130 16 N -0.714 5.714 17 C -0.236 4.236 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.282 1.282 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.390 0.610 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -13.158 -10.570 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.199 4.199 5 C 0.080 3.920 6 H 0.082 0.918 7 C -0.026 4.026 8 O -0.188 6.188 9 C 0.059 3.941 10 C -0.207 4.207 11 C -0.110 4.110 12 C -0.161 4.161 13 C -0.139 4.139 14 C 0.045 3.955 15 F -0.109 7.109 16 N -0.355 5.355 17 C -0.367 4.367 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.225 0.775 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.129 -12.763 -10.477 16.513 hybrid contribution 0.170 0.811 0.578 1.011 sum 0.299 -11.952 -9.898 15.521 Atomic orbital electron populations 1.21880 0.94246 1.00662 1.02004 1.21157 0.96773 0.96032 0.94756 1.21880 0.99272 0.96143 1.02049 1.21975 0.99964 0.99831 0.98117 1.20389 0.96314 0.86965 0.88365 0.91799 1.23535 0.78250 1.00563 1.00250 1.86546 1.24819 1.21330 1.86140 1.19281 0.91689 0.86392 0.96730 1.21210 1.00110 0.92095 1.07283 1.20965 0.95363 0.96404 0.98299 1.20817 0.93140 0.98337 1.03772 1.20980 1.00991 0.90257 1.01636 1.17047 0.85117 0.84400 1.08985 1.91527 1.70296 1.54927 1.94122 1.42385 1.32307 1.32650 1.28131 1.19204 1.07478 1.03402 1.06658 0.90992 1.24725 0.97878 0.99446 0.98699 1.69676 1.21654 1.41962 1.24286 0.86272 0.78443 0.83360 0.78618 1.21775 1.21906 1.20825 0.90957 0.95377 0.92126 0.94323 0.94860 0.89740 0.93406 0.93605 0.93536 0.91915 0.92067 0.84639 0.85530 0.85373 0.84539 0.77548 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 7.49 37.15 0.28 -2.27 16 2 C -0.08 -1.51 0.63 -154.51 -0.10 -1.61 16 3 C -0.14 -2.54 7.77 37.16 0.29 -2.25 16 4 C -0.14 -2.08 7.92 37.16 0.29 -1.79 16 5 C 0.19 3.65 2.25 -67.93 -0.15 3.49 16 6 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 7 C 0.05 0.81 3.88 37.15 0.14 0.95 16 8 O -0.28 -4.93 5.94 -19.61 -0.12 -5.04 16 9 C 0.11 1.69 6.69 -39.17 -0.26 1.43 16 10 C -0.19 -2.42 9.04 -39.44 -0.36 -2.77 16 11 C -0.09 -0.98 10.04 -39.59 -0.40 -1.38 16 12 C -0.14 -1.48 10.04 -39.56 -0.40 -1.88 16 13 C -0.12 -1.46 10.02 -39.54 -0.40 -1.86 16 14 C 0.06 1.01 7.31 -39.30 -0.29 0.72 16 15 F -0.13 -2.32 17.11 2.25 0.04 -2.29 16 16 N -0.71 -17.23 3.90 -53.43 -0.21 -17.44 16 17 C -0.24 -6.27 7.82 -15.06 -0.12 -6.39 16 18 H 0.07 1.85 7.30 -52.49 -0.38 1.47 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 21 Si 0.90 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.07 1.67 6.99 -51.93 -0.36 1.31 16 26 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.06 1.16 5.62 -51.93 -0.29 0.87 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.86 5.99 -51.93 -0.31 1.55 16 31 H 0.05 0.67 6.38 -51.93 -0.33 0.34 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.02 7.66 -51.93 -0.40 0.63 16 35 H 0.06 0.83 5.97 -51.93 -0.31 0.52 16 36 H 0.14 1.54 6.30 -52.49 -0.33 1.21 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.39 10.43 7.33 -40.82 -0.30 10.13 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -29.87 328.05 -7.15 -37.02 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.95 Total: 8.84 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.55 Total: -16.00 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.52 Total: -44.65 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.12 Total: -5.04 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.87 -7.15 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343607784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.022 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds