Wall clock time and date at job start Tue Mar 31 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99946 * 2 1 3 5 5 C 1.53005 * 109.47127 * 119.99686 * 2 1 3 6 6 H 1.08996 * 109.46960 * 186.44882 * 5 2 1 7 7 C 1.52995 * 109.46702 * 66.44977 * 5 2 1 8 8 O 1.42898 * 109.47385 * 301.98431 * 7 5 2 9 9 C 1.35959 * 117.00196 * 180.02562 * 8 7 5 10 10 C 1.38670 * 120.06010 * 359.97438 * 9 8 7 11 11 C 1.38181 * 119.96750 * 180.29699 * 10 9 8 12 12 C 1.38262 * 120.09367 * 359.45240 * 11 10 9 13 13 C 1.38261 * 120.12559 * 0.55221 * 12 11 10 14 14 C 1.38331 * 120.03207 * 359.72237 * 13 12 11 15 15 F 1.35098 * 120.04863 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.46840 * 306.45303 * 5 2 1 17 17 C 1.36936 * 119.99788 * 274.99322 * 16 5 2 18 18 H 1.08002 * 120.00087 * 0.02562 * 17 16 5 19 19 C 1.38809 * 119.99863 * 180.02562 * 17 16 5 20 20 N 1.31621 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99869 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47113 * 90.00278 * 21 19 17 23 23 H 1.48499 * 109.46890 * 209.99918 * 21 19 17 24 24 H 1.48489 * 109.47188 * 329.99794 * 21 19 17 25 25 H 1.09001 * 109.47638 * 289.04063 * 1 2 3 26 26 H 1.09005 * 109.47188 * 49.03860 * 1 2 3 27 27 H 1.09001 * 109.47181 * 169.03503 * 1 2 3 28 28 H 1.09004 * 109.46922 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46902 * 299.99862 * 3 2 1 30 30 H 1.09003 * 109.47314 * 59.99675 * 3 2 1 31 31 H 1.08999 * 109.46864 * 300.00077 * 4 2 1 32 32 H 1.09001 * 109.47121 * 59.99789 * 4 2 1 33 33 H 1.09004 * 109.47484 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.47314 * 181.98480 * 7 5 2 35 35 H 1.09002 * 109.47675 * 61.99093 * 7 5 2 36 36 H 1.07997 * 120.01378 * 0.03433 * 10 9 8 37 37 H 1.07996 * 119.95005 * 179.70408 * 11 10 9 38 38 H 1.08000 * 119.93537 * 180.27022 * 12 11 10 39 39 H 1.07998 * 119.98002 * 179.74091 * 13 12 11 40 40 H 0.97001 * 119.99810 * 94.99900 * 16 5 2 41 41 H 0.96995 * 119.99800 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1238 -0.6223 1.3089 7 6 1.6665 -2.2028 1.1709 8 8 0.2487 -2.3308 1.0462 9 6 -0.2524 -3.5920 0.9645 10 6 0.6027 -4.6830 1.0029 11 6 0.0919 -5.9638 0.9134 12 6 -1.2718 -6.1598 0.7970 13 6 -2.1279 -5.0748 0.7583 14 6 -1.6217 -3.7901 0.8417 15 9 -2.4580 -2.7297 0.8044 16 7 1.4289 -0.1259 2.4404 17 6 1.9876 0.9850 3.0139 18 1 2.8784 1.4225 2.5879 19 6 1.4090 1.5487 4.1427 20 7 0.3231 1.0157 4.6615 21 14 2.1708 3.0646 4.9246 22 1 1.5805 4.2844 4.3173 23 1 1.8996 3.0577 6.3846 24 1 3.6375 3.0566 4.6936 25 1 -0.3634 0.3353 0.9714 26 1 -0.3634 0.6737 -0.7761 27 1 -0.3633 -1.0089 -0.1955 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 1.9988 -2.7097 2.0769 35 1 2.1497 -2.6540 0.3043 36 1 1.6677 -4.5316 1.0984 37 1 0.7585 -6.8132 0.9386 38 1 -1.6687 -7.1621 0.7317 39 1 -3.1924 -5.2304 0.6631 40 1 0.6287 -0.5188 2.8227 41 1 -0.0809 1.4095 5.4505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343607784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:08 Heat of formation + Delta-G solvation = -66.837668 kcal Electronic energy + Delta-G solvation = -23133.904078 eV Core-core repulsion = 19735.304176 eV Total energy + Delta-G solvation = -3398.599902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.73600 -41.16339 -39.40514 -37.70674 -35.22917 -32.67434 -31.59700 -31.03315 -29.61231 -27.99584 -27.59704 -25.80515 -24.17860 -23.35082 -22.66382 -19.66648 -19.29789 -19.06484 -17.92177 -17.59514 -17.24296 -16.57790 -16.24313 -15.87736 -15.61279 -15.40603 -15.28116 -15.17950 -14.63733 -14.24427 -13.94430 -13.67421 -13.39825 -13.06329 -12.95315 -12.85544 -12.79886 -12.61067 -12.46906 -12.34447 -12.14985 -12.02404 -11.94494 -11.77306 -11.52909 -11.17320 -11.09285 -10.73812 -9.86361 -9.07431 -8.91228 -7.86795 -5.13170 0.20613 0.37687 1.47055 1.48488 1.56077 2.23589 2.59429 2.69547 3.36197 3.46117 3.78856 3.87750 3.93929 4.05800 4.11326 4.28066 4.29742 4.38874 4.42985 4.54887 4.58346 4.59928 4.83447 4.92805 4.98956 5.00551 5.08012 5.10872 5.16585 5.23627 5.32344 5.33433 5.44088 5.48585 5.53483 5.57332 5.77478 5.81254 5.86920 6.33170 6.47549 7.40511 8.16522 8.40186 9.37013 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.005319 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.720684 B = 5262.783977 C = 5821.059478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 C -0.133 4.133 4 C -0.132 4.132 5 C 0.181 3.819 6 H 0.072 0.928 7 C 0.057 3.943 8 O -0.305 6.305 9 C 0.076 3.924 10 C -0.191 4.191 11 C -0.083 4.083 12 C -0.131 4.131 13 C -0.119 4.119 14 C 0.023 3.977 15 F -0.156 7.156 16 N -0.724 5.724 17 C -0.215 4.215 18 H 0.081 0.919 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.962 3.038 22 H -0.294 1.294 23 H -0.302 1.302 24 H -0.266 1.266 25 H 0.025 0.975 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.156 0.844 40 H 0.373 0.627 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 -15.582 -12.472 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.083 4.083 3 C -0.190 4.190 4 C -0.190 4.190 5 C 0.072 3.928 6 H 0.090 0.910 7 C -0.018 4.018 8 O -0.219 6.219 9 C 0.029 3.971 10 C -0.210 4.210 11 C -0.101 4.101 12 C -0.149 4.149 13 C -0.137 4.137 14 C 0.003 3.997 15 F -0.135 7.135 16 N -0.363 5.363 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.272 4.272 20 N -0.625 5.625 21 Si 0.793 3.207 22 H -0.222 1.222 23 H -0.229 1.229 24 H -0.191 1.191 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.205 0.795 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.952 -15.205 -12.433 19.738 hybrid contribution -0.394 1.407 1.060 1.805 sum 1.558 -13.798 -11.373 17.949 Atomic orbital electron populations 1.21740 0.95778 1.00714 0.99406 1.21067 0.95342 0.95958 0.95925 1.21816 1.00104 0.96328 1.00784 1.21867 1.01176 0.99774 0.96151 1.20675 0.96346 0.88850 0.86879 0.90988 1.23377 0.78447 0.98398 1.01610 1.86463 1.25197 1.23155 1.87054 1.19579 0.92236 0.86396 0.98865 1.21471 1.00474 0.92204 1.06838 1.21459 0.96173 0.96512 0.95950 1.21325 0.92912 0.99377 1.01238 1.21321 1.02492 0.89310 1.00622 1.17626 0.85255 0.85108 1.11711 1.91448 1.71030 1.56387 1.94660 1.42545 1.31823 1.32229 1.29698 1.19579 1.06643 1.03065 1.05450 0.90072 1.25453 0.98894 1.02626 1.00200 1.69852 1.23769 1.43853 1.24980 0.85285 0.78431 0.80046 0.76961 1.22158 1.22881 1.19054 0.95569 0.94742 0.91859 0.92853 0.93320 0.93784 0.92573 0.92650 0.91490 0.92356 0.88587 0.83275 0.81777 0.81496 0.82679 0.79535 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 7.49 71.98 0.54 -4.22 16 2 C -0.08 -2.80 0.63 -52.18 -0.03 -2.84 16 3 C -0.13 -4.83 7.77 71.98 0.56 -4.27 16 4 C -0.13 -3.49 7.92 71.98 0.57 -2.92 16 5 C 0.18 6.85 2.25 44.99 0.10 6.95 16 6 H 0.07 2.61 8.08 -2.39 -0.02 2.59 16 7 C 0.06 1.80 3.88 71.98 0.28 2.08 16 8 O -0.31 -11.08 5.94 -93.09 -0.55 -11.64 16 9 C 0.08 2.39 6.69 22.53 0.15 2.54 16 10 C -0.19 -4.48 9.04 22.36 0.20 -4.28 16 11 C -0.08 -1.44 10.04 22.26 0.22 -1.21 16 12 C -0.13 -2.21 10.04 22.28 0.22 -1.98 16 13 C -0.12 -2.71 10.02 22.30 0.22 -2.48 16 14 C 0.02 0.72 7.31 22.45 0.16 0.88 16 15 F -0.16 -5.94 17.11 44.97 0.77 -5.17 16 16 N -0.72 -35.99 3.90 -322.94 -1.26 -37.25 16 17 C -0.22 -11.64 7.82 84.03 0.66 -10.99 16 18 H 0.08 4.16 7.30 -2.91 -0.02 4.14 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 21 Si 0.96 46.91 29.55 68.60 2.03 48.93 16 22 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H 0.03 1.26 6.99 -2.39 -0.02 1.24 16 26 H 0.03 1.27 8.10 -2.38 -0.02 1.25 16 27 H 0.06 2.49 5.62 -2.39 -0.01 2.48 16 28 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 1.95 5.99 -2.39 -0.01 1.93 16 31 H 0.06 1.40 6.38 -2.39 -0.02 1.39 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.87 7.66 -2.38 -0.02 1.85 16 35 H 0.10 2.33 5.97 -2.39 -0.01 2.32 16 36 H 0.15 2.97 6.30 -2.91 -0.02 2.95 16 37 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.37 21.03 7.33 -92.71 -0.68 20.36 16 41 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -69.33 328.05 5.95 -63.39 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.35 Total: 29.76 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.33 Total: -26.92 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -0.98 Total: -98.36 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.55 Total: -11.64 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.77 Total: -5.17 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -69.33 5.95 -63.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343607784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.451 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds