Wall clock time and date at job start Tue Mar 31 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47475 * 2 1 4 4 N 1.46906 * 109.47094 * 120.00176 * 2 1 3 5 5 C 1.46901 * 110.99391 * 275.00180 * 4 2 1 6 6 C 1.50709 * 109.46732 * 179.97438 * 5 4 2 7 7 C 1.38632 * 119.74919 * 269.72556 * 6 5 4 8 8 C 1.37621 * 120.24608 * 179.72049 * 7 6 5 9 9 C 1.40719 * 119.74349 * 0.57260 * 8 7 6 10 10 C 1.41396 * 120.24300 * 179.68087 * 9 8 7 11 11 H 1.08006 * 119.99651 * 24.40960 * 10 9 8 12 12 C 1.39943 * 119.99858 * 204.41043 * 10 9 8 13 13 N 1.30821 * 119.99924 * 17.85541 * 12 10 9 14 14 Si 1.86800 * 119.99767 * 197.85648 * 12 10 9 15 15 H 1.48499 * 109.47406 * 60.00200 * 14 12 10 16 16 H 1.48504 * 109.46924 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47300 * 299.99840 * 14 12 10 18 18 C 1.40716 * 119.51227 * 359.70410 * 9 8 7 19 19 C 1.37618 * 119.74664 * 359.97438 * 18 9 8 20 20 C 1.50698 * 109.47382 * 239.99904 * 2 1 3 21 21 C 1.38240 * 119.99982 * 279.87031 * 20 2 1 22 22 C 1.38239 * 120.00145 * 180.02562 * 21 20 2 23 23 C 1.38232 * 119.99773 * 0.07206 * 22 21 20 24 24 C 1.38233 * 120.00111 * 359.97438 * 23 22 21 25 25 C 1.38227 * 120.00117 * 99.99677 * 20 2 1 26 26 H 1.09001 * 109.47546 * 299.99925 * 1 2 3 27 27 H 1.08998 * 109.47016 * 60.00079 * 1 2 3 28 28 H 1.09003 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.00897 * 111.00402 * 151.04480 * 4 2 1 30 30 H 1.08998 * 109.47075 * 299.99378 * 5 4 2 31 31 H 1.08992 * 109.47484 * 60.00255 * 5 4 2 32 32 H 1.08001 * 119.87464 * 359.97438 * 7 6 5 33 33 H 1.08003 * 120.12550 * 180.28227 * 8 7 6 34 34 H 0.97004 * 119.99450 * 179.97438 * 13 12 10 35 35 H 1.08000 * 120.12583 * 179.97438 * 18 9 8 36 36 H 1.07993 * 119.87614 * 179.97438 * 19 18 9 37 37 H 1.08001 * 120.00179 * 0.10509 * 21 20 2 38 38 H 1.07994 * 120.00065 * 180.34170 * 22 21 20 39 39 H 1.08001 * 120.00229 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00148 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.99939 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0823 0.2226 2.3469 6 6 2.5872 -0.5218 3.5561 7 6 1.6866 -1.1471 4.4045 8 6 2.1368 -1.8346 5.5085 9 6 3.5162 -1.8911 5.7811 10 6 3.9898 -2.5887 6.9161 11 1 3.3989 -3.3836 7.3467 12 6 5.2241 -2.2492 7.4813 13 7 5.7750 -1.0953 7.2047 14 14 6.0851 -3.4436 8.6309 15 1 6.3573 -4.7140 7.9116 16 1 7.3664 -2.8508 9.0916 17 1 5.2159 -3.7153 9.8040 18 6 4.4206 -1.2477 4.9161 19 6 3.9484 -0.5717 3.8144 20 6 2.0323 -0.7104 -1.2304 21 6 2.0693 -2.0919 -1.2643 22 6 2.5306 -2.7436 -2.3927 23 6 2.9564 -2.0138 -3.4868 24 6 2.9204 -0.6323 -3.4526 25 6 2.4587 0.0194 -2.3242 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9172 -1.1206 1.0288 30 1 2.7588 1.0461 2.1182 31 1 1.0870 0.6163 2.5525 32 1 0.6280 -1.0980 4.1960 33 1 1.4338 -2.3249 6.1656 34 1 6.6305 -0.8599 7.5968 35 1 5.4813 -1.2844 5.1161 36 1 4.6407 -0.0769 3.1494 37 1 1.7365 -2.6621 -0.4095 38 1 2.5543 -3.8229 -2.4212 39 1 3.3173 -2.5228 -4.3683 40 1 3.2534 -0.0621 -4.3072 41 1 2.4313 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343677159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:42 Heat of formation + Delta-G solvation = 31.582865 kcal Electronic energy + Delta-G solvation = -20437.418266 eV Core-core repulsion = 17473.855423 eV Total energy + Delta-G solvation = -2963.562843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.53282 -37.75506 -36.15075 -33.81738 -31.92257 -30.91890 -29.75423 -29.21270 -28.68943 -26.16070 -23.77289 -22.92898 -22.21772 -20.96039 -20.20061 -19.81215 -17.27017 -17.03202 -15.75991 -15.50479 -15.23291 -14.62380 -14.34291 -14.02690 -13.86569 -13.54869 -13.40675 -13.34679 -12.64838 -12.53647 -12.15854 -12.07943 -11.93594 -11.84030 -11.49738 -11.33561 -11.07946 -11.05331 -10.91786 -10.60705 -10.49274 -10.34000 -9.55435 -9.36752 -9.10665 -8.94316 -8.75330 -8.07534 -7.42385 -7.27463 -6.75027 -4.33205 1.30770 1.38215 2.76825 3.06711 3.09361 3.11504 3.20845 3.75866 3.93835 4.42975 4.68424 4.74445 4.92400 4.95653 5.12327 5.33338 5.45340 5.50414 5.58436 5.72906 5.79339 5.88912 5.89820 5.95339 6.03762 6.06826 6.29211 6.33784 6.40817 6.44247 6.44917 6.49727 6.61564 6.96923 6.97804 7.09227 7.30017 7.40209 7.43623 7.63857 7.75565 7.91935 8.07609 8.17035 8.32856 8.66111 8.91636 9.00274 10.19528 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.003193 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.844134 B = 8766.601311 C = 9246.099473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.119 3.881 3 H 0.046 0.954 4 N -0.677 5.677 5 C 0.125 3.875 6 C -0.213 4.213 7 C -0.068 4.068 8 C -0.229 4.229 9 C 0.113 3.887 10 C -0.464 4.464 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.166 4.166 19 C -0.095 4.095 20 C -0.084 4.084 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.117 4.117 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.342 0.658 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.280 0.720 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 1.263 -15.833 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.064 0.936 4 N -0.309 5.309 5 C -0.003 4.003 6 C -0.215 4.215 7 C -0.087 4.087 8 C -0.248 4.248 9 C 0.110 3.890 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.185 4.185 19 C -0.114 4.114 20 C -0.085 4.085 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.136 4.136 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.660 1.189 -15.590 16.315 hybrid contribution 1.297 0.110 0.320 1.341 sum -3.362 1.300 -15.271 15.690 Atomic orbital electron populations 1.21758 0.93914 1.02461 1.00909 1.20469 0.95958 0.95109 0.87505 0.93638 1.60800 1.33806 1.33291 1.03007 1.20603 0.98929 0.92025 0.88746 1.18878 0.93398 1.10232 0.98991 1.20321 0.96635 0.97113 0.94600 1.20971 0.95248 1.08094 1.00535 1.17616 0.90649 0.89345 0.91354 1.19573 1.02453 1.16629 1.10685 0.90524 1.25905 0.96926 0.94741 0.96560 1.69825 1.16310 1.18601 1.37181 0.86387 0.78681 0.81337 0.80418 1.18819 1.20377 1.19024 1.21270 0.99766 1.02910 0.94600 1.20523 0.93746 0.99725 0.97399 1.20056 0.98759 0.94179 0.95477 1.21175 0.98199 0.94037 0.98220 1.21206 0.99270 0.99933 0.93632 1.21132 1.00522 0.94222 0.98555 1.21072 1.00477 0.94652 0.98055 1.21043 0.99484 0.99646 0.93407 0.92349 0.93076 0.91916 0.83877 0.96292 0.91958 0.89497 0.89145 0.90879 0.86592 0.89989 0.84864 0.86136 0.86442 0.86380 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.39 37.16 0.35 -1.25 16 2 C 0.12 1.56 2.82 -68.86 -0.19 1.37 16 3 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 4 N -0.68 -10.61 5.68 -109.22 -0.62 -11.23 16 5 C 0.12 2.18 5.60 -4.97 -0.03 2.15 16 6 C -0.21 -4.60 5.42 -104.32 -0.56 -5.17 16 7 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 8 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 9 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 10 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 11 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 12 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 13 N -0.79 -20.64 10.95 55.55 0.61 -20.03 16 14 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 19 C -0.09 -2.20 9.67 -39.66 -0.38 -2.59 16 20 C -0.08 -1.05 4.71 -104.63 -0.49 -1.55 16 21 C -0.10 -1.23 9.00 -39.58 -0.36 -1.58 16 22 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 23 C -0.13 -1.29 10.05 -39.59 -0.40 -1.68 16 24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 25 C -0.12 -1.32 9.67 -39.58 -0.38 -1.70 16 26 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.34 5.59 7.98 -39.29 -0.31 5.28 16 30 H 0.02 0.33 7.99 -51.93 -0.42 -0.09 16 31 H 0.06 1.05 7.37 -51.93 -0.38 0.67 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 34 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 35 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.13 1.74 7.72 -52.49 -0.40 1.33 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -27.23 343.10 -11.23 -38.46 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.98 Total: 10.45 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -5.38 Total: -36.54 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: -0.01 Total: -31.26 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.23 -11.23 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343677159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.042 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds