Wall clock time and date at job start Tue Mar 31 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08997 * 109.47695 * 344.99786 * 7 6 2 9 9 C 1.52996 * 109.47127 * 105.00075 * 7 6 2 10 10 N 1.46906 * 109.46834 * 224.99790 * 7 6 2 11 11 C 1.46897 * 110.99985 * 155.00129 * 10 7 6 12 12 C 1.52996 * 109.47368 * 179.97438 * 11 10 7 13 13 C 1.53001 * 109.47155 * 299.99963 * 12 11 10 14 14 C 1.52997 * 109.47098 * 59.99990 * 12 11 10 15 15 C 1.53001 * 109.47217 * 180.02562 * 12 11 10 16 16 C 1.50706 * 109.46890 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00165 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99707 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00069 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47236 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46951 * 120.00283 * 20 18 16 23 23 H 1.48508 * 109.46892 * 239.99874 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 27 27 H 1.08004 * 122.53880 * 0.02562 * 3 2 1 28 28 H 1.07992 * 125.20624 * 180.02562 * 4 3 2 29 29 H 1.09006 * 109.47363 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.47134 * 300.00027 * 9 7 6 31 31 H 1.09002 * 109.47271 * 59.99752 * 9 7 6 32 32 H 1.00899 * 111.00098 * 278.95583 * 10 7 6 33 33 H 1.08998 * 109.47339 * 300.00517 * 11 10 7 34 34 H 1.09008 * 109.47213 * 59.99790 * 11 10 7 35 35 H 1.09003 * 109.46962 * 59.99879 * 13 12 11 36 36 H 1.09001 * 109.47170 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.47457 * 299.99879 * 13 12 11 38 38 H 1.09000 * 109.46959 * 60.00371 * 14 12 11 39 39 H 1.09002 * 109.47533 * 179.97438 * 14 12 11 40 40 H 1.09003 * 109.47094 * 300.00167 * 14 12 11 41 41 H 1.08993 * 109.46915 * 299.99841 * 15 12 11 42 42 H 1.08997 * 109.47168 * 60.00259 * 15 12 11 43 43 H 0.97003 * 119.99642 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5973 -2.4782 0.2776 9 6 1.8066 -3.1393 -1.3780 10 7 2.3742 -3.3385 0.9958 11 6 1.5381 -4.4499 1.4687 12 6 2.3210 -5.2791 2.4887 13 6 3.5851 -5.8360 1.8307 14 6 2.7108 -4.3938 3.6741 15 6 1.4504 -6.4370 2.9807 16 6 2.2214 -7.2533 3.9859 17 1 3.2312 -6.9739 4.2479 18 6 1.6373 -8.3562 4.5718 19 7 0.4074 -8.6962 4.2531 20 14 2.5927 -9.3677 5.8183 21 1 3.9444 -8.7805 6.0004 22 1 1.8715 -9.3634 7.1163 23 1 2.7218 -10.7637 5.3283 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.7965 2.1464 0.0004 28 1 4.3077 1.7822 0.0010 29 1 1.3941 -4.1483 -1.3733 30 1 1.2720 -2.5313 -2.1079 31 1 2.8630 -3.1803 -1.6434 32 1 3.2451 -3.6776 0.6155 33 1 0.6373 -4.0533 1.9370 34 1 1.2608 -5.0809 0.6242 35 1 4.2055 -5.0113 1.4798 36 1 4.1431 -6.4263 2.5575 37 1 3.3075 -6.4666 0.9862 38 1 1.8102 -3.9972 4.1429 39 1 3.2682 -4.9846 4.4011 40 1 3.3312 -3.5691 3.3232 41 1 0.5497 -6.0407 3.4493 42 1 1.1732 -7.0676 2.1360 43 1 -0.0034 -9.4724 4.6651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348242375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:11 Heat of formation + Delta-G solvation = 7.157132 kcal Electronic energy + Delta-G solvation = -20138.387662 eV Core-core repulsion = 17309.209591 eV Total energy + Delta-G solvation = -2829.178071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.87186 -37.59360 -35.20564 -32.41043 -30.94516 -29.49806 -27.17924 -26.86459 -26.30679 -25.14404 -23.41249 -22.45937 -21.28227 -18.70096 -17.77566 -17.01475 -16.21837 -15.48167 -14.97668 -14.83677 -14.33387 -14.10050 -13.94735 -13.25653 -13.14216 -12.92530 -12.87679 -12.51812 -12.22707 -12.00916 -11.94954 -11.90017 -11.71165 -11.56249 -11.19290 -10.98568 -10.86528 -10.73829 -10.55657 -10.47364 -10.26031 -10.10210 -9.67782 -9.02928 -8.82722 -8.56565 -8.30898 -8.29310 -8.08697 -5.95359 -3.95207 1.04449 1.70277 2.09256 2.68908 3.33235 3.41154 3.44826 4.36068 4.51467 4.77631 4.89042 5.06876 5.20104 5.34940 5.37343 5.40694 5.45837 5.55975 5.63303 5.70053 5.73931 5.81637 5.92957 5.97474 6.02847 6.08683 6.26867 6.34028 6.44469 6.51818 6.53188 6.68927 6.80870 6.85288 7.21885 7.22406 7.28305 7.38617 7.62975 7.71910 7.86692 8.05185 8.49757 9.10412 9.67684 11.16360 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.003550 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.267171 B = 7885.053493 C = 8125.333815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.120 4.120 3 C -0.127 4.127 4 C -0.229 4.229 5 S 0.112 5.888 6 C -0.143 4.143 7 C 0.147 3.853 8 H 0.096 0.904 9 C -0.178 4.178 10 N -0.679 5.679 11 C 0.071 3.929 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.034 3.966 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.134 0.866 28 H 0.159 0.841 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.339 0.661 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 17.712 -11.537 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.158 4.158 4 C -0.365 4.365 5 S 0.377 5.623 6 C -0.262 4.262 7 C 0.035 3.965 8 H 0.113 0.887 9 C -0.237 4.237 10 N -0.310 5.310 11 C -0.058 4.058 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.152 0.848 28 H 0.176 0.824 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.440 17.140 -10.960 20.824 hybrid contribution -0.819 -0.318 -0.029 0.879 sum 3.621 16.822 -10.989 20.417 Atomic orbital electron populations 1.20503 0.90095 1.02723 1.01849 1.18756 0.97274 0.91554 1.05666 1.19965 0.92877 0.98964 1.04023 1.25535 0.99692 0.99475 1.11754 1.84236 1.06159 0.99573 1.72284 1.24352 0.95628 0.98368 1.07814 1.20032 0.98252 0.87351 0.90849 0.88663 1.22510 1.02307 1.01408 0.97498 1.60688 1.07178 1.24500 1.38654 1.22151 0.96096 0.90338 0.97170 1.20624 0.95597 0.95783 0.93799 1.21773 0.97590 0.99004 1.00277 1.21598 1.00310 0.97982 0.97455 1.19124 0.94286 0.91143 0.95808 1.21281 1.00037 1.10169 1.22892 0.92232 1.25014 0.94907 0.97678 0.97011 1.69980 1.13179 1.26894 1.43731 0.86616 0.80222 0.80186 0.81466 1.19766 1.21157 1.21211 0.91643 0.91762 0.91381 0.84814 0.82358 0.91683 0.91990 0.92380 0.84107 0.91463 0.95599 0.94880 0.91676 0.94098 0.94203 0.92715 0.93844 0.96683 0.96924 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.82 36.01 0.35 -0.53 16 2 C -0.12 -1.38 5.80 -106.25 -0.62 -2.00 16 3 C -0.13 -1.35 9.98 -41.21 -0.41 -1.76 16 4 C -0.23 -2.39 11.23 29.04 0.33 -2.06 16 5 S 0.11 1.30 23.18 -107.50 -2.49 -1.19 16 6 C -0.14 -1.77 5.41 -36.00 -0.19 -1.97 16 7 C 0.15 1.84 2.86 -68.87 -0.20 1.65 16 8 H 0.10 1.20 5.93 -51.93 -0.31 0.89 16 9 C -0.18 -1.97 9.14 37.16 0.34 -1.63 16 10 N -0.68 -9.85 5.31 -107.96 -0.57 -10.42 16 11 C 0.07 1.20 4.44 -3.83 -0.02 1.18 16 12 C -0.06 -1.14 0.60 -154.51 -0.09 -1.24 16 13 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16 14 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 16 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 17 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 26 H 0.07 0.68 6.49 -51.93 -0.34 0.34 16 27 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 28 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.34 4.82 6.51 -39.29 -0.26 4.57 16 33 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.03 0.44 7.44 -51.92 -0.39 0.05 16 35 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 36 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 40 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -29.35 349.52 -9.65 -39.00 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.18 Total: 1.18 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -0.39 Total: -24.34 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.16 Total: -36.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.49 Total: -1.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.35 -9.65 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348242375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.153 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds