Wall clock time and date at job start Tue Mar 31 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08997 * 109.47695 * 344.99786 * 7 6 2 9 9 C 1.52996 * 109.47127 * 105.00075 * 7 6 2 10 10 N 1.46906 * 109.46834 * 224.99790 * 7 6 2 11 11 C 1.46897 * 110.99985 * 155.00129 * 10 7 6 12 12 C 1.52996 * 109.47368 * 179.97438 * 11 10 7 13 13 C 1.53001 * 109.47155 * 299.99963 * 12 11 10 14 14 C 1.52997 * 109.47098 * 59.99990 * 12 11 10 15 15 C 1.53001 * 109.47217 * 180.02562 * 12 11 10 16 16 C 1.50706 * 109.46890 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00165 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99707 * 179.97438 * 16 15 12 19 19 N 1.31517 * 120.00069 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47236 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46951 * 120.00283 * 20 18 16 23 23 H 1.48508 * 109.46892 * 239.99874 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 27 27 H 1.08004 * 122.53880 * 0.02562 * 3 2 1 28 28 H 1.07992 * 125.20624 * 180.02562 * 4 3 2 29 29 H 1.09006 * 109.47363 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.47134 * 300.00027 * 9 7 6 31 31 H 1.09002 * 109.47271 * 59.99752 * 9 7 6 32 32 H 1.00899 * 111.00098 * 278.95583 * 10 7 6 33 33 H 1.08998 * 109.47339 * 300.00517 * 11 10 7 34 34 H 1.09008 * 109.47213 * 59.99790 * 11 10 7 35 35 H 1.09003 * 109.46962 * 59.99879 * 13 12 11 36 36 H 1.09001 * 109.47170 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.47457 * 299.99879 * 13 12 11 38 38 H 1.09000 * 109.46959 * 60.00371 * 14 12 11 39 39 H 1.09002 * 109.47533 * 179.97438 * 14 12 11 40 40 H 1.09003 * 109.47094 * 300.00167 * 14 12 11 41 41 H 1.08993 * 109.46915 * 299.99841 * 15 12 11 42 42 H 1.08997 * 109.47168 * 60.00259 * 15 12 11 43 43 H 0.97003 * 119.99642 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5973 -2.4782 0.2776 9 6 1.8066 -3.1393 -1.3780 10 7 2.3742 -3.3385 0.9958 11 6 1.5381 -4.4499 1.4687 12 6 2.3210 -5.2791 2.4887 13 6 3.5851 -5.8360 1.8307 14 6 2.7108 -4.3938 3.6741 15 6 1.4504 -6.4370 2.9807 16 6 2.2214 -7.2533 3.9859 17 1 3.2312 -6.9739 4.2479 18 6 1.6373 -8.3562 4.5718 19 7 0.4074 -8.6962 4.2531 20 14 2.5927 -9.3677 5.8183 21 1 3.9444 -8.7805 6.0004 22 1 1.8715 -9.3634 7.1163 23 1 2.7218 -10.7637 5.3283 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.7965 2.1464 0.0004 28 1 4.3077 1.7822 0.0010 29 1 1.3941 -4.1483 -1.3733 30 1 1.2720 -2.5313 -2.1079 31 1 2.8630 -3.1803 -1.6434 32 1 3.2451 -3.6776 0.6155 33 1 0.6373 -4.0533 1.9370 34 1 1.2608 -5.0809 0.6242 35 1 4.2055 -5.0113 1.4798 36 1 4.1431 -6.4263 2.5575 37 1 3.3075 -6.4666 0.9862 38 1 1.8102 -3.9972 4.1429 39 1 3.2682 -4.9846 4.4011 40 1 3.3312 -3.5691 3.3232 41 1 0.5497 -6.0407 3.4493 42 1 1.1732 -7.0676 2.1360 43 1 -0.0034 -9.4724 4.6651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348242375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:11 Heat of formation + Delta-G solvation = -8.119007 kcal Electronic energy + Delta-G solvation = -20139.050085 eV Core-core repulsion = 17309.209591 eV Total energy + Delta-G solvation = -2829.840494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.89546 -38.88396 -36.52574 -34.42378 -31.94520 -30.59498 -28.80413 -28.02255 -27.88643 -26.64513 -24.64786 -23.91281 -22.28888 -19.92282 -18.98979 -18.32181 -18.02134 -16.60517 -16.47009 -15.98660 -15.82168 -15.29825 -15.00183 -14.58149 -14.50130 -14.29675 -13.92543 -13.85272 -13.62007 -13.37792 -13.05610 -12.85714 -12.79394 -12.69986 -12.68217 -12.48926 -12.42345 -12.27761 -12.13251 -12.04180 -11.86465 -11.41538 -11.38766 -10.86315 -10.74480 -10.50273 -9.48460 -9.28696 -9.09343 -8.13506 -6.20081 0.19924 0.86124 1.25384 1.40144 1.41463 1.53444 1.86893 2.44185 3.20650 3.24509 3.82116 4.06780 4.15140 4.18213 4.26985 4.30806 4.39418 4.55914 4.61023 4.68026 4.73392 4.76761 4.83810 4.88361 4.92348 4.97576 5.08007 5.13497 5.19929 5.21580 5.22468 5.25930 5.52369 5.54753 5.58628 5.63312 5.64896 5.72142 5.87742 5.93603 6.07242 6.37894 6.46185 6.95141 7.47220 8.98986 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.003550 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.267171 B = 7885.053493 C = 8125.333815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.123 4.123 3 C -0.137 4.137 4 C -0.224 4.224 5 S 0.093 5.907 6 C -0.166 4.166 7 C 0.149 3.851 8 H 0.092 0.908 9 C -0.172 4.172 10 N -0.677 5.677 11 C 0.085 3.915 12 C -0.054 4.054 13 C -0.122 4.122 14 C -0.106 4.106 15 C 0.041 3.959 16 C -0.513 4.513 17 H 0.065 0.935 18 C -0.004 4.004 19 N -0.937 5.937 20 Si 0.955 3.045 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.156 0.844 28 H 0.182 0.818 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.342 0.658 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.064 0.936 41 H -0.016 1.016 42 H -0.014 1.014 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 19.311 -11.971 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C -0.168 4.168 4 C -0.359 4.359 5 S 0.358 5.642 6 C -0.284 4.284 7 C 0.038 3.962 8 H 0.110 0.890 9 C -0.231 4.231 10 N -0.309 5.309 11 C -0.044 4.044 12 C -0.054 4.054 13 C -0.179 4.179 14 C -0.163 4.163 15 C 0.003 3.997 16 C -0.551 4.551 17 H 0.083 0.917 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.780 3.220 21 H -0.186 1.186 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.174 0.826 28 H 0.199 0.801 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.697 18.754 -11.403 22.676 hybrid contribution -1.235 -0.724 0.072 1.434 sum 4.462 18.030 -11.330 21.757 Atomic orbital electron populations 1.20551 0.89025 1.02908 1.02722 1.19101 0.98284 0.91693 1.04512 1.20242 0.92984 0.99648 1.03905 1.25868 1.00288 0.99087 1.10653 1.84244 1.06061 1.01101 1.72786 1.24320 0.96078 0.98257 1.09719 1.20010 0.97820 0.87424 0.90944 0.89033 1.22436 1.02624 1.01094 0.96926 1.60604 1.07053 1.23283 1.39958 1.21832 0.95582 0.90725 0.96280 1.20482 0.95627 0.94447 0.94882 1.21680 0.96913 0.99769 0.99555 1.21491 0.99907 0.98143 0.96800 1.18995 0.93919 0.92437 0.94308 1.21651 1.00316 1.10245 1.22887 0.91706 1.25895 0.95829 0.99135 0.99162 1.70114 1.14903 1.27641 1.45232 0.85547 0.79187 0.78479 0.78762 1.18550 1.20874 1.20784 0.90377 0.90535 0.92238 0.82628 0.80064 0.92283 0.90800 0.92099 0.83754 0.92376 0.95729 0.91796 0.93462 0.94227 0.95173 0.94324 0.91737 0.99723 0.99572 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.82 71.24 0.70 -0.90 16 2 C -0.12 -2.59 5.80 -20.92 -0.12 -2.71 16 3 C -0.14 -2.54 9.98 21.22 0.21 -2.33 16 4 C -0.22 -4.09 11.23 66.72 0.75 -3.34 16 5 S 0.09 2.00 23.18 -56.49 -1.31 0.69 16 6 C -0.17 -3.84 5.41 24.59 0.13 -3.71 16 7 C 0.15 3.58 2.86 44.17 0.13 3.71 16 8 H 0.09 2.25 5.93 -2.39 -0.01 2.24 16 9 C -0.17 -3.58 9.14 71.98 0.66 -2.93 16 10 N -0.68 -18.89 5.31 -495.46 -2.63 -21.52 16 11 C 0.08 2.87 4.44 86.30 0.38 3.25 16 12 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 13 C -0.12 -4.42 7.89 71.98 0.57 -3.85 16 14 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 15 C 0.04 2.12 4.04 29.85 0.12 2.24 16 16 C -0.51 -28.48 7.65 25.60 0.20 -28.28 16 17 H 0.06 3.47 5.68 -2.91 -0.02 3.46 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -57.36 13.29 21.45 0.28 -57.08 16 20 Si 0.95 44.67 29.54 68.60 2.03 46.69 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 26 H 0.06 1.12 6.49 -2.38 -0.02 1.11 16 27 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 29 H 0.06 1.29 7.45 -2.38 -0.02 1.28 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.34 9.15 6.51 -89.69 -0.58 8.57 16 33 H 0.06 2.06 8.05 -2.39 -0.02 2.05 16 34 H 0.02 0.83 7.44 -2.38 -0.02 0.82 16 35 H 0.06 1.91 6.57 -2.39 -0.02 1.90 16 36 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 40 H 0.06 2.22 7.60 -2.39 -0.02 2.20 16 41 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -63.24 349.52 3.50 -59.73 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.40 Total: 15.80 kcal Atomic # 6 Polarization: -49.06 SS G_CDS: 4.74 Total: -44.32 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -2.35 Total: -78.60 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.31 Total: 0.69 kcal Total: -63.24 3.50 -59.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348242375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.616 kcal (2) G-P(sol) polarization free energy of solvation -63.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds