Wall clock time and date at job start Tue Mar 31 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08990 * 109.47521 * 14.99796 * 7 6 2 9 9 C 1.53004 * 109.47126 * 254.99687 * 7 6 2 10 10 N 1.46902 * 109.46887 * 135.00010 * 7 6 2 11 11 C 1.46903 * 110.99882 * 204.99394 * 10 7 6 12 12 C 1.53002 * 109.47149 * 179.97438 * 11 10 7 13 13 C 1.52997 * 109.47567 * 300.00592 * 12 11 10 14 14 C 1.52999 * 109.46655 * 60.00443 * 12 11 10 15 15 C 1.52993 * 109.46982 * 180.02562 * 12 11 10 16 16 C 1.50706 * 109.46819 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00232 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99623 * 180.02562 * 16 15 12 19 19 N 1.31519 * 119.99481 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00303 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47141 * 89.99941 * 20 18 16 22 22 H 1.48499 * 109.46907 * 210.00095 * 20 18 16 23 23 H 1.48497 * 109.46837 * 329.99940 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 27 27 H 1.08004 * 122.53880 * 0.02562 * 3 2 1 28 28 H 1.07994 * 125.20325 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46951 * 59.99965 * 9 7 6 30 30 H 1.08992 * 109.47036 * 180.02562 * 9 7 6 31 31 H 1.09007 * 109.47124 * 300.00288 * 9 7 6 32 32 H 1.00897 * 111.00113 * 81.04640 * 10 7 6 33 33 H 1.08994 * 109.47784 * 300.00242 * 11 10 7 34 34 H 1.09009 * 109.46683 * 60.00502 * 11 10 7 35 35 H 1.09005 * 109.47062 * 59.99727 * 13 12 11 36 36 H 1.08997 * 109.47307 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.47138 * 300.00099 * 13 12 11 38 38 H 1.09001 * 109.47113 * 59.99897 * 14 12 11 39 39 H 1.09005 * 109.47491 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47720 * 299.99660 * 14 12 11 41 41 H 1.08997 * 109.47895 * 299.99994 * 15 12 11 42 42 H 1.08996 * 109.47156 * 60.00661 * 15 12 11 43 43 H 0.97001 * 119.99470 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5975 -2.4807 -0.2543 9 6 1.8055 -3.1259 1.4086 10 7 2.3750 -3.3480 -0.9629 11 6 1.5392 -4.4640 -1.4256 12 6 2.3225 -5.3022 -2.4379 13 6 2.7122 -4.4278 -3.6314 14 6 3.5866 -5.8526 -1.7746 15 6 1.4519 -6.4641 -2.9202 16 6 2.2237 -7.2901 -3.9169 17 1 3.2339 -7.0136 -4.1802 18 6 1.6396 -8.3981 -4.4933 19 7 2.3129 -9.1186 -5.3634 20 14 -0.1086 -8.8750 -4.0395 21 1 -1.0600 -8.2024 -4.9601 22 1 -0.2656 -10.3472 -4.1541 23 1 -0.3897 -8.4544 -2.6433 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.7965 2.1464 0.0004 28 1 4.3077 1.7823 0.0002 29 1 1.2703 -2.5108 2.1321 30 1 1.3930 -4.1347 1.4132 31 1 2.8618 -3.1643 1.6752 32 1 3.2455 -3.6834 -0.5786 33 1 1.2612 -5.0867 -0.5754 34 1 0.6388 -4.0718 -1.8985 35 1 3.3324 -3.5997 -3.2880 36 1 3.2706 -5.0249 -4.3523 37 1 1.8116 -4.0356 -4.1039 38 1 3.3090 -6.4756 -0.9244 39 1 4.1446 -6.4502 -2.4956 40 1 4.2068 -5.0246 -1.4312 41 1 1.1739 -7.0872 -2.0703 42 1 0.5515 -6.0716 -3.3929 43 1 1.9021 -9.8983 -5.7687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348242378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:13 Heat of formation + Delta-G solvation = -5.864099 kcal Electronic energy + Delta-G solvation = -20188.530488 eV Core-core repulsion = 17358.787773 eV Total energy + Delta-G solvation = -2829.742714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90203 -38.91430 -36.53491 -34.41128 -32.00699 -30.68715 -29.30651 -28.02925 -27.91479 -26.56048 -24.40168 -23.72518 -22.26341 -19.87475 -18.98414 -18.84971 -18.01597 -16.53947 -16.30047 -16.01937 -15.88026 -15.27346 -15.06986 -14.71081 -14.56203 -14.22538 -14.10588 -13.86679 -13.63569 -13.46844 -13.03037 -12.93496 -12.78332 -12.73884 -12.68679 -12.44657 -12.38894 -12.26070 -12.10834 -12.05439 -11.69546 -11.41711 -11.36958 -10.99603 -10.82651 -10.69084 -9.47046 -9.27900 -9.09037 -8.20770 -6.21115 0.19820 0.86267 1.25762 1.36965 1.38096 1.49229 1.86712 2.40420 3.14391 3.24596 3.83740 4.05287 4.15080 4.17064 4.25686 4.30221 4.34270 4.56259 4.61058 4.68052 4.72912 4.76937 4.84918 4.88908 4.90537 4.96529 5.04445 5.09097 5.15001 5.18522 5.21164 5.25218 5.37277 5.45617 5.52551 5.61785 5.63143 5.72067 5.75658 5.82365 6.11234 6.42183 6.46669 6.86378 7.41316 8.95596 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.003780 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.255167 B = 7405.716802 C = 7734.009882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.123 4.123 3 C -0.137 4.137 4 C -0.225 4.225 5 S 0.089 5.911 6 C -0.165 4.165 7 C 0.151 3.849 8 H 0.096 0.904 9 C -0.173 4.173 10 N -0.681 5.681 11 C 0.082 3.918 12 C -0.048 4.048 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.002 4.002 16 C -0.504 4.504 17 H 0.043 0.957 18 C 0.000 4.000 19 N -0.956 5.956 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.247 1.247 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.156 0.844 28 H 0.180 0.820 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.342 0.658 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 20.762 16.143 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C -0.168 4.168 4 C -0.361 4.361 5 S 0.354 5.646 6 C -0.283 4.283 7 C 0.040 3.960 8 H 0.114 0.886 9 C -0.232 4.232 10 N -0.313 5.313 11 C -0.047 4.047 12 C -0.048 4.048 13 C -0.166 4.166 14 C -0.181 4.181 15 C -0.040 4.040 16 C -0.542 4.542 17 H 0.061 0.939 18 C -0.195 4.195 19 N -0.598 5.598 20 Si 0.766 3.234 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.171 1.171 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.173 0.827 28 H 0.198 0.802 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.162 0.838 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.197 20.177 15.506 25.475 hybrid contribution -1.591 -0.513 0.233 1.687 sum -2.788 19.664 15.739 25.341 Atomic orbital electron populations 1.20540 0.88851 1.03286 1.02467 1.19107 0.98356 0.91610 1.04510 1.20258 0.92959 0.99741 1.03841 1.25860 1.00333 0.99082 1.10793 1.84311 1.06386 1.01128 1.72776 1.24368 0.95832 0.98437 1.09631 1.19994 0.97929 0.87155 0.90961 0.88607 1.22454 1.02558 1.01333 0.96858 1.60578 1.07140 1.22923 1.40651 1.21896 0.95653 0.90716 0.96421 1.20342 0.95435 0.94124 0.94891 1.21503 1.00146 0.98121 0.96782 1.21688 0.97174 0.99761 0.99491 1.19583 0.95218 0.94021 0.95141 1.21439 1.00696 1.09390 1.22657 0.93909 1.25938 1.02076 0.96577 0.94952 1.70075 1.39576 1.18849 1.31269 0.85783 0.80376 0.77000 0.80213 1.19668 1.21527 1.17078 0.91419 0.90179 0.91403 0.82679 0.80236 0.90867 0.91872 0.92356 0.83794 0.94785 0.91386 0.91891 0.95429 0.94390 0.93488 0.94550 0.91933 0.96677 0.96981 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 9.60 71.24 0.68 -0.75 16 2 C -0.12 -2.44 5.80 -20.92 -0.12 -2.56 16 3 C -0.14 -2.46 9.98 21.22 0.21 -2.25 16 4 C -0.23 -4.07 11.23 66.72 0.75 -3.32 16 5 S 0.09 1.88 23.17 -56.49 -1.31 0.57 16 6 C -0.16 -3.60 5.41 24.59 0.13 -3.47 16 7 C 0.15 3.26 2.70 44.17 0.12 3.38 16 8 H 0.10 2.04 6.30 -2.39 -0.02 2.02 16 9 C -0.17 -3.22 9.14 71.98 0.66 -2.56 16 10 N -0.68 -17.50 5.31 -495.44 -2.63 -20.13 16 11 C 0.08 2.44 4.44 86.30 0.38 2.82 16 12 C -0.05 -1.78 0.60 -52.18 -0.03 -1.81 16 13 C -0.11 -4.18 8.06 71.98 0.58 -3.60 16 14 C -0.12 -4.47 7.89 71.98 0.57 -3.90 16 15 C 0.00 -0.08 3.11 29.85 0.09 0.01 16 16 C -0.50 -28.40 8.20 25.60 0.21 -28.19 16 17 H 0.04 2.66 5.92 -2.91 -0.02 2.64 16 18 C 0.00 0.01 5.47 84.65 0.46 0.47 16 19 N -0.96 -60.44 13.96 21.45 0.30 -60.14 16 20 Si 0.94 44.66 27.47 68.60 1.88 46.55 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 26 H 0.07 0.99 6.93 -2.38 -0.02 0.98 16 27 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 31 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 32 H 0.34 8.63 6.51 -89.70 -0.58 8.05 16 33 H 0.03 0.96 7.43 -2.39 -0.02 0.95 16 34 H 0.07 2.03 8.06 -2.38 -0.02 2.01 16 35 H 0.06 2.18 7.60 -2.38 -0.02 2.17 16 36 H 0.03 1.21 6.62 -2.39 -0.02 1.20 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.54 6.62 -2.38 -0.02 1.53 16 40 H 0.06 1.89 6.57 -2.39 -0.02 1.87 16 41 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 42 H 0.01 0.54 7.57 -2.39 -0.02 0.53 16 43 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -64.83 346.35 3.29 -61.54 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.34 Total: 17.32 kcal Atomic # 6 Polarization: -50.41 SS G_CDS: 4.70 Total: -45.71 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.33 Total: -80.27 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.31 Total: 0.57 kcal Total: -64.83 3.29 -61.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348242378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.673 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds