Wall clock time and date at job start Tue Mar 31 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75876 * 125.20555 * 2 1 4 4 C 1.75881 * 90.97460 * 180.02562 * 3 2 1 5 5 C 1.33397 * 109.59209 * 359.72867 * 4 3 2 6 6 C 1.33387 * 125.20202 * 180.02562 * 2 1 3 7 7 C 1.50698 * 122.54213 * 359.97326 * 6 2 1 8 8 N 1.46902 * 109.46802 * 73.60616 * 7 6 2 9 9 C 1.46907 * 110.99745 * 187.16234 * 8 7 6 10 10 C 1.50706 * 109.46812 * 177.44909 * 9 8 7 11 11 H 1.07994 * 120.00105 * 5.40426 * 10 9 8 12 12 C 1.37876 * 119.99661 * 185.39816 * 10 9 8 13 13 N 1.31515 * 120.00252 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99873 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46966 * 89.99975 * 14 12 10 16 16 H 1.48498 * 109.47137 * 210.00159 * 14 12 10 17 17 H 1.48498 * 109.47292 * 330.00353 * 14 12 10 18 18 C 1.46898 * 110.99916 * 63.21211 * 8 7 6 19 19 C 1.53002 * 109.47460 * 81.39285 * 18 8 7 20 20 C 1.53003 * 109.47012 * 75.85389 * 19 18 8 21 21 C 1.52998 * 109.47110 * 195.85488 * 19 18 8 22 22 C 1.53001 * 109.46774 * 315.85613 * 19 18 8 23 23 H 1.08997 * 109.46596 * 269.97632 * 1 2 3 24 24 H 1.09001 * 109.46562 * 29.96919 * 1 2 3 25 25 H 1.08993 * 109.47231 * 149.97397 * 1 2 3 26 26 H 1.08000 * 125.20586 * 180.02562 * 4 3 2 27 27 H 1.07998 * 122.53967 * 180.24336 * 5 4 3 28 28 H 1.09002 * 109.47096 * 313.61214 * 7 6 2 29 29 H 1.09000 * 109.47626 * 193.60694 * 7 6 2 30 30 H 1.09000 * 109.47250 * 297.44581 * 9 8 7 31 31 H 1.08995 * 109.47237 * 57.45190 * 9 8 7 32 32 H 0.96996 * 119.99709 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.47104 * 201.39349 * 18 8 7 34 34 H 1.08999 * 109.46820 * 321.39079 * 18 8 7 35 35 H 1.08994 * 109.47286 * 39.43641 * 20 19 18 36 36 H 1.09000 * 109.46663 * 159.43421 * 20 19 18 37 37 H 1.09003 * 109.46931 * 279.42977 * 20 19 18 38 38 H 1.09002 * 109.46902 * 60.00100 * 21 19 18 39 39 H 1.09001 * 109.47108 * 179.97438 * 21 19 18 40 40 H 1.08998 * 109.47302 * 299.99605 * 21 19 18 41 41 H 1.08997 * 109.47414 * 71.11716 * 22 19 18 42 42 H 1.08999 * 109.46858 * 191.11564 * 22 19 18 43 43 H 1.09000 * 109.47016 * 311.10870 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9752 0.4477 -0.0008 5 6 3.6380 -0.8430 0.0050 6 6 2.2760 -1.0899 -0.0005 7 6 1.7052 -2.4846 -0.0005 8 7 1.1575 -2.7895 -1.3291 9 6 0.4421 -4.0726 -1.3218 10 6 -0.1576 -4.3210 -2.6819 11 1 0.0511 -3.6429 -3.4961 12 6 -0.9727 -5.4140 -2.8866 13 7 -1.2272 -6.2395 -1.8950 14 14 -1.7168 -5.7215 -4.5723 15 1 -0.7969 -6.5698 -5.3720 16 1 -3.0213 -6.4142 -4.4187 17 1 -1.9234 -4.4250 -5.2662 18 6 2.2149 -2.7821 -2.3488 19 6 2.9549 -4.1210 -2.3259 20 6 2.0916 -5.1924 -2.9951 21 6 4.2776 -3.9857 -3.0830 22 6 3.2355 -4.5239 -0.8768 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3632 0.8903 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 4.9863 0.8270 -0.0007 27 1 4.3721 -1.6351 0.0095 28 1 0.9118 -2.5526 0.7438 29 1 2.4921 -3.1993 0.2408 30 1 1.1384 -4.8754 -1.0797 31 1 -0.3512 -4.0420 -0.5750 32 1 -1.8004 -7.0086 -2.0392 33 1 1.7702 -2.6295 -3.3322 34 1 2.9169 -1.9753 -2.1383 35 1 1.5933 -4.7660 -3.8656 36 1 2.7227 -6.0239 -3.3087 37 1 1.3438 -5.5506 -2.2875 38 1 4.8926 -3.2224 -2.6062 39 1 4.8050 -4.9394 -3.0663 40 1 4.0777 -3.6987 -4.1153 41 1 2.3024 -4.8114 -0.3924 42 1 3.9275 -5.3660 -0.8613 43 1 3.6768 -3.6813 -0.3444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351403310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:56 Heat of formation + Delta-G solvation = 81.247453 kcal Electronic energy + Delta-G solvation = -21634.844220 eV Core-core repulsion = 18808.878947 eV Total energy + Delta-G solvation = -2825.965274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75630 -37.52624 -33.41179 -32.76936 -31.49478 -28.89590 -27.68080 -26.66316 -25.76319 -24.72531 -23.73592 -22.10553 -20.32547 -18.20833 -17.98697 -16.84217 -16.28101 -15.26787 -15.01714 -14.74733 -14.28188 -13.92070 -13.52830 -13.34114 -13.02482 -12.73579 -12.48518 -12.27388 -11.82866 -11.73569 -11.54667 -11.30521 -11.22633 -11.06770 -10.94192 -10.84505 -10.78466 -10.58914 -10.40632 -10.36864 -10.08859 -9.81272 -9.56584 -9.10896 -8.88000 -8.31248 -8.26080 -8.06435 -6.82633 -6.00939 -3.90220 1.29284 1.90128 2.24357 3.01281 3.32075 3.39611 3.43024 4.45529 5.06672 5.23176 5.31150 5.33581 5.49799 5.54510 5.61506 5.71951 5.77961 5.89734 5.92538 6.00896 6.07270 6.12319 6.23409 6.28499 6.36600 6.41256 6.44497 6.56522 6.58219 6.65772 6.75840 6.91037 6.94194 6.95179 7.10772 7.27057 7.38990 7.46806 7.82912 8.01127 8.15750 8.30265 8.59610 9.03333 9.61263 11.09590 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.005868 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.047435 B = 4770.144218 C = 5477.673774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.144 4.144 3 S 0.053 5.947 4 C -0.226 4.226 5 C -0.116 4.116 6 C -0.097 4.097 7 C 0.075 3.925 8 N -0.524 5.524 9 C 0.160 3.840 10 C -0.482 4.482 11 H 0.062 0.938 12 C 0.051 3.949 13 N -0.899 5.899 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.081 3.919 19 C -0.092 4.092 20 C -0.150 4.150 21 C -0.134 4.134 22 C -0.164 4.164 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.156 0.844 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.006 0.994 37 H 0.123 0.877 38 H 0.041 0.959 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 9.592 4.000 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.261 4.261 3 S 0.316 5.684 4 C -0.361 4.361 5 C -0.147 4.147 6 C -0.108 4.108 7 C -0.055 4.055 8 N -0.247 5.247 9 C 0.036 3.964 10 C -0.521 4.521 11 H 0.080 0.920 12 C -0.149 4.149 13 N -0.540 5.540 14 Si 0.714 3.286 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.048 4.048 19 C -0.094 4.094 20 C -0.206 4.206 21 C -0.192 4.192 22 C -0.220 4.220 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.174 0.826 27 H 0.151 0.849 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.141 0.859 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.307 11.379 3.921 14.625 hybrid contribution 0.620 -2.266 -0.854 2.499 sum 8.927 9.114 3.067 13.121 Atomic orbital electron populations 1.20412 0.87693 1.04326 1.02013 1.24278 0.99913 0.93918 1.08007 1.84034 0.97942 1.11277 1.75114 1.25323 1.01139 0.96681 1.12926 1.20105 0.96008 0.96119 1.02513 1.18910 0.92099 0.96602 1.03222 1.21500 0.99286 0.90790 0.93929 1.62360 1.24314 1.36192 1.01815 1.20686 0.93198 0.84599 0.97878 1.20997 1.27187 1.08312 0.95625 0.92005 1.24818 0.96973 0.96521 0.96584 1.69922 1.38363 1.14867 1.30835 0.86668 0.78699 0.78322 0.84896 1.20795 1.21422 1.19978 1.22058 0.91957 0.93856 0.96902 1.21120 0.95025 0.98540 0.94720 1.23020 0.98606 0.95333 1.03605 1.21855 0.97125 1.00255 0.99965 1.22748 1.02376 0.99702 0.97206 0.91681 0.92231 0.87848 0.82597 0.84898 0.91214 0.91325 0.95215 0.95455 0.93028 0.91436 0.93134 0.92017 0.97544 0.85895 0.93960 0.93635 0.93228 0.89821 0.94112 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.97 36.01 0.36 -0.88 16 2 C -0.14 -2.18 6.50 -36.00 -0.23 -2.42 16 3 S 0.05 0.70 23.33 -107.50 -2.51 -1.81 16 4 C -0.23 -2.88 11.23 29.04 0.33 -2.55 16 5 C -0.12 -1.63 8.93 -41.20 -0.37 -2.00 16 6 C -0.10 -1.52 4.22 -106.25 -0.45 -1.97 16 7 C 0.07 1.28 3.95 -4.98 -0.02 1.26 16 8 N -0.52 -10.36 4.16 -237.51 -0.99 -11.34 16 9 C 0.16 3.73 3.85 -4.97 -0.02 3.71 16 10 C -0.48 -12.23 4.95 -34.44 -0.17 -12.40 16 11 H 0.06 1.60 6.02 -52.49 -0.32 1.29 16 12 C 0.05 1.35 4.75 -17.82 -0.08 1.27 16 13 N -0.90 -25.00 13.28 55.43 0.74 -24.27 16 14 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.08 1.52 4.52 -3.82 -0.02 1.50 16 19 C -0.09 -1.66 0.77 -154.51 -0.12 -1.78 16 20 C -0.15 -3.16 6.68 37.16 0.25 -2.91 16 21 C -0.13 -2.09 8.29 37.16 0.31 -1.78 16 22 C -0.16 -2.79 6.58 37.16 0.24 -2.54 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.10 1.75 7.02 -51.93 -0.36 1.39 16 26 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.13 1.71 7.28 -52.49 -0.38 1.33 16 28 H 0.07 1.23 7.97 -51.93 -0.41 0.81 16 29 H 0.07 1.14 3.20 -51.93 -0.17 0.97 16 30 H 0.03 0.73 2.46 -51.93 -0.13 0.60 16 31 H 0.03 0.71 8.11 -51.93 -0.42 0.29 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.07 1.40 6.63 -51.93 -0.34 1.05 16 34 H 0.05 0.90 5.88 -51.93 -0.31 0.59 16 35 H 0.06 1.38 5.93 -51.93 -0.31 1.07 16 36 H 0.01 0.11 7.96 -51.93 -0.41 -0.30 16 37 H 0.12 2.96 3.30 -51.93 -0.17 2.79 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.59 4.14 -51.93 -0.22 1.38 16 42 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.05 0.82 5.26 -51.93 -0.27 0.55 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -26.26 323.15 -9.22 -35.48 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.31 Total: 4.63 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 0.01 Total: -23.49 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.25 Total: -35.61 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.26 -9.22 -35.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351403310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.728 kcal (2) G-P(sol) polarization free energy of solvation -26.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds