Wall clock time and date at job start Tue Mar 31 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75876 * 125.20555 * 2 1 4 4 C 1.75881 * 90.97460 * 180.02562 * 3 2 1 5 5 C 1.33397 * 109.59209 * 359.72867 * 4 3 2 6 6 C 1.33387 * 125.20202 * 180.02562 * 2 1 3 7 7 C 1.50698 * 122.54213 * 359.97326 * 6 2 1 8 8 N 1.46902 * 109.46802 * 73.60616 * 7 6 2 9 9 C 1.46907 * 110.99745 * 187.16234 * 8 7 6 10 10 C 1.50706 * 109.46812 * 177.44909 * 9 8 7 11 11 H 1.07994 * 120.00105 * 5.40426 * 10 9 8 12 12 C 1.37876 * 119.99661 * 185.39816 * 10 9 8 13 13 N 1.31515 * 120.00252 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99873 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46966 * 89.99975 * 14 12 10 16 16 H 1.48498 * 109.47137 * 210.00159 * 14 12 10 17 17 H 1.48498 * 109.47292 * 330.00353 * 14 12 10 18 18 C 1.46898 * 110.99916 * 63.21211 * 8 7 6 19 19 C 1.53002 * 109.47460 * 81.39285 * 18 8 7 20 20 C 1.53003 * 109.47012 * 75.85389 * 19 18 8 21 21 C 1.52998 * 109.47110 * 195.85488 * 19 18 8 22 22 C 1.53001 * 109.46774 * 315.85613 * 19 18 8 23 23 H 1.08997 * 109.46596 * 269.97632 * 1 2 3 24 24 H 1.09001 * 109.46562 * 29.96919 * 1 2 3 25 25 H 1.08993 * 109.47231 * 149.97397 * 1 2 3 26 26 H 1.08000 * 125.20586 * 180.02562 * 4 3 2 27 27 H 1.07998 * 122.53967 * 180.24336 * 5 4 3 28 28 H 1.09002 * 109.47096 * 313.61214 * 7 6 2 29 29 H 1.09000 * 109.47626 * 193.60694 * 7 6 2 30 30 H 1.09000 * 109.47250 * 297.44581 * 9 8 7 31 31 H 1.08995 * 109.47237 * 57.45190 * 9 8 7 32 32 H 0.96996 * 119.99709 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.47104 * 201.39349 * 18 8 7 34 34 H 1.08999 * 109.46820 * 321.39079 * 18 8 7 35 35 H 1.08994 * 109.47286 * 39.43641 * 20 19 18 36 36 H 1.09000 * 109.46663 * 159.43421 * 20 19 18 37 37 H 1.09003 * 109.46931 * 279.42977 * 20 19 18 38 38 H 1.09002 * 109.46902 * 60.00100 * 21 19 18 39 39 H 1.09001 * 109.47108 * 179.97438 * 21 19 18 40 40 H 1.08998 * 109.47302 * 299.99605 * 21 19 18 41 41 H 1.08997 * 109.47414 * 71.11716 * 22 19 18 42 42 H 1.08999 * 109.46858 * 191.11564 * 22 19 18 43 43 H 1.09000 * 109.47016 * 311.10870 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9752 0.4477 -0.0008 5 6 3.6380 -0.8430 0.0050 6 6 2.2760 -1.0899 -0.0005 7 6 1.7052 -2.4846 -0.0005 8 7 1.1575 -2.7895 -1.3291 9 6 0.4421 -4.0726 -1.3218 10 6 -0.1576 -4.3210 -2.6819 11 1 0.0511 -3.6429 -3.4961 12 6 -0.9727 -5.4140 -2.8866 13 7 -1.2272 -6.2395 -1.8950 14 14 -1.7168 -5.7215 -4.5723 15 1 -0.7969 -6.5698 -5.3720 16 1 -3.0213 -6.4142 -4.4187 17 1 -1.9234 -4.4250 -5.2662 18 6 2.2149 -2.7821 -2.3488 19 6 2.9549 -4.1210 -2.3259 20 6 2.0916 -5.1924 -2.9951 21 6 4.2776 -3.9857 -3.0830 22 6 3.2355 -4.5239 -0.8768 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3632 0.8903 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 4.9863 0.8270 -0.0007 27 1 4.3721 -1.6351 0.0095 28 1 0.9118 -2.5526 0.7438 29 1 2.4921 -3.1993 0.2408 30 1 1.1384 -4.8754 -1.0797 31 1 -0.3512 -4.0420 -0.5750 32 1 -1.8004 -7.0086 -2.0392 33 1 1.7702 -2.6295 -3.3322 34 1 2.9169 -1.9753 -2.1383 35 1 1.5933 -4.7660 -3.8656 36 1 2.7227 -6.0239 -3.3087 37 1 1.3438 -5.5506 -2.2875 38 1 4.8926 -3.2224 -2.6062 39 1 4.8050 -4.9394 -3.0663 40 1 4.0777 -3.6987 -4.1153 41 1 2.3024 -4.8114 -0.3924 42 1 3.9275 -5.3660 -0.8613 43 1 3.6768 -3.6813 -0.3444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351403310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:56 Heat of formation + Delta-G solvation = 67.927338 kcal Electronic energy + Delta-G solvation = -21635.421824 eV Core-core repulsion = 18808.878947 eV Total energy + Delta-G solvation = -2826.542877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24072 -38.75960 -35.06419 -34.52677 -32.65652 -30.58607 -29.19074 -28.03000 -27.20184 -26.29659 -25.29491 -23.39511 -21.88892 -19.72355 -19.19974 -18.23821 -17.90335 -16.91203 -16.57643 -16.04835 -16.01059 -15.36847 -14.87014 -14.63765 -14.41268 -14.18950 -13.92449 -13.52553 -13.20233 -13.13817 -12.97604 -12.84994 -12.64435 -12.56027 -12.47690 -12.43261 -12.30987 -12.19240 -11.97858 -11.87839 -11.47213 -11.41920 -11.23468 -10.81808 -10.69296 -10.36109 -9.32680 -9.17347 -8.43407 -8.06110 -5.99344 0.21319 0.83761 1.18145 1.40770 1.43646 1.51397 1.87755 2.47748 3.26615 3.62184 4.06424 4.10588 4.13021 4.21084 4.29448 4.41895 4.59600 4.67307 4.72850 4.77923 4.80453 4.82547 4.88138 4.90853 5.01369 5.07442 5.14108 5.21668 5.27771 5.29449 5.34366 5.38158 5.48583 5.55274 5.59704 5.62210 5.73574 5.78729 5.83004 6.18788 6.26742 6.58418 6.85216 7.01519 7.55017 9.03960 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.005868 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.047435 B = 4770.144218 C = 5477.673774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.169 4.169 3 S 0.084 5.916 4 C -0.214 4.214 5 C -0.132 4.132 6 C -0.108 4.108 7 C 0.080 3.920 8 N -0.531 5.531 9 C 0.176 3.824 10 C -0.474 4.474 11 H 0.053 0.947 12 C 0.008 3.992 13 N -0.931 5.931 14 Si 0.936 3.064 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.273 1.273 18 C 0.088 3.912 19 C -0.090 4.090 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.157 4.157 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.188 0.812 27 H 0.147 0.853 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.032 0.968 31 H -0.010 1.010 32 H 0.258 0.742 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.012 0.988 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.455 11.171 3.822 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.286 4.286 3 S 0.347 5.653 4 C -0.348 4.348 5 C -0.163 4.163 6 C -0.120 4.120 7 C -0.049 4.049 8 N -0.254 5.254 9 C 0.051 3.949 10 C -0.513 4.513 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.573 5.573 14 Si 0.764 3.236 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.198 1.198 18 C -0.040 4.040 19 C -0.092 4.092 20 C -0.200 4.200 21 C -0.186 4.186 22 C -0.213 4.213 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.205 0.795 27 H 0.165 0.835 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.009 0.991 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.031 0.969 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.738 12.976 3.737 17.252 hybrid contribution -0.111 -2.663 -0.766 2.773 sum 10.627 10.313 2.971 15.103 Atomic orbital electron populations 1.20323 0.87986 1.03318 1.02442 1.24452 1.00347 0.95374 1.08459 1.83945 0.97438 1.09640 1.74248 1.25729 1.02343 0.96083 1.10691 1.20170 0.95191 0.97238 1.03654 1.18860 0.93252 0.95446 1.04442 1.21416 0.98993 0.92530 0.91945 1.62193 1.25450 1.34047 1.03709 1.20389 0.92525 0.86440 0.95595 1.21147 1.26446 1.07517 0.96185 0.92879 1.25399 0.97716 0.96605 0.99154 1.70026 1.39417 1.15450 1.32421 0.85864 0.77912 0.78111 0.81755 1.20312 1.21509 1.19771 1.21975 0.91723 0.95043 0.95301 1.21062 0.95828 0.96709 0.95563 1.22808 0.98450 0.96484 1.02212 1.21782 0.95608 1.01535 0.99680 1.22619 1.01427 1.00991 0.96273 0.90613 0.91093 0.90956 0.79529 0.83501 0.92675 0.90453 0.95125 0.99148 0.93260 0.93782 0.91298 0.93970 0.96868 0.88974 0.91750 0.92784 0.93253 0.92430 0.92888 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.37 9.97 71.24 0.71 -1.66 16 2 C -0.17 -4.91 6.50 24.59 0.16 -4.75 16 3 S 0.08 1.96 23.33 -56.49 -1.32 0.65 16 4 C -0.21 -4.59 11.23 66.72 0.75 -3.84 16 5 C -0.13 -3.28 8.93 21.22 0.19 -3.09 16 6 C -0.11 -3.23 4.22 -20.92 -0.09 -3.32 16 7 C 0.08 2.76 3.95 85.56 0.34 3.10 16 8 N -0.53 -21.38 4.16 -905.35 -3.76 -25.14 16 9 C 0.18 8.51 3.85 85.56 0.33 8.84 16 10 C -0.47 -24.85 4.95 25.60 0.13 -24.72 16 11 H 0.05 2.84 6.02 -2.91 -0.02 2.82 16 12 C 0.01 0.44 4.75 84.65 0.40 0.85 16 13 N -0.93 -53.49 13.28 21.45 0.28 -53.21 16 14 Si 0.94 43.81 29.54 68.60 2.03 45.84 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 C 0.09 3.25 4.52 86.30 0.39 3.64 16 19 C -0.09 -3.13 0.77 -52.18 -0.04 -3.17 16 20 C -0.14 -6.08 6.68 71.98 0.48 -5.60 16 21 C -0.13 -3.62 8.29 71.98 0.60 -3.02 16 22 C -0.16 -5.09 6.58 71.98 0.47 -4.61 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 2.55 7.02 -2.39 -0.02 2.53 16 26 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.15 3.19 7.28 -2.91 -0.02 3.17 16 28 H 0.05 2.02 7.97 -2.39 -0.02 2.00 16 29 H 0.08 2.51 3.20 -2.39 -0.01 2.50 16 30 H 0.03 1.55 2.46 -2.39 -0.01 1.55 16 31 H -0.01 -0.53 8.11 -2.39 -0.02 -0.55 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.04 1.82 6.63 -2.39 -0.02 1.81 16 34 H 0.07 2.30 5.88 -2.39 -0.01 2.29 16 35 H 0.04 1.91 5.93 -2.39 -0.01 1.89 16 36 H 0.01 0.50 7.96 -2.39 -0.02 0.48 16 37 H 0.09 4.55 3.30 -2.39 -0.01 4.54 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 2.20 4.14 -2.39 -0.01 2.19 16 42 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 43 H 0.07 2.10 5.26 -2.39 -0.01 2.09 16 Total: -1.00 -57.63 323.15 3.06 -54.58 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.01 Total: 18.66 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 4.82 Total: -41.36 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -3.48 Total: -78.35 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.32 Total: 0.65 kcal Total: -57.63 3.06 -54.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351403310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.503 kcal (2) G-P(sol) polarization free energy of solvation -57.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds