Wall clock time and date at job start Tue Mar 31 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75883 * 125.20542 * 2 1 4 4 C 1.75884 * 90.96828 * 180.02562 * 3 2 1 5 5 C 1.33382 * 109.59579 * 359.73393 * 4 3 2 6 6 C 1.33388 * 125.20088 * 180.02562 * 2 1 3 7 7 C 1.50704 * 122.54217 * 359.97438 * 6 2 1 8 8 N 1.46900 * 109.46655 * 59.76115 * 7 6 2 9 9 C 1.46910 * 111.00104 * 201.19922 * 8 7 6 10 10 C 1.50700 * 109.46871 * 71.93340 * 9 8 7 11 11 H 1.07999 * 120.00042 * 4.96755 * 10 9 8 12 12 C 1.37876 * 119.99900 * 184.95895 * 10 9 8 13 13 N 1.31509 * 119.99799 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00021 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46882 * 59.99902 * 14 12 10 16 16 H 1.48500 * 109.47111 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46826 * 300.00208 * 14 12 10 18 18 C 1.46905 * 111.00150 * 77.24699 * 8 7 6 19 19 C 1.52999 * 109.46929 * 286.94837 * 18 8 7 20 20 C 1.52998 * 109.46854 * 176.93549 * 19 18 8 21 21 C 1.53003 * 109.47090 * 174.99629 * 20 19 18 22 22 C 1.53001 * 109.47071 * 294.99925 * 20 19 18 23 23 H 1.08992 * 109.47364 * 273.71089 * 1 2 3 24 24 H 1.09003 * 109.46611 * 33.71049 * 1 2 3 25 25 H 1.09004 * 109.47035 * 153.70623 * 1 2 3 26 26 H 1.08007 * 125.19640 * 180.02562 * 4 3 2 27 27 H 1.07999 * 122.53947 * 180.24116 * 5 4 3 28 28 H 1.09002 * 109.47231 * 299.76976 * 7 6 2 29 29 H 1.08990 * 109.47410 * 179.76230 * 7 6 2 30 30 H 1.08997 * 109.46977 * 191.93639 * 9 8 7 31 31 H 1.08999 * 109.46526 * 311.93758 * 9 8 7 32 32 H 0.97004 * 119.99654 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46603 * 46.94522 * 18 8 7 34 34 H 1.08998 * 109.46886 * 166.94473 * 18 8 7 35 35 H 1.09004 * 109.46942 * 296.93449 * 19 18 8 36 36 H 1.08996 * 109.47044 * 56.93719 * 19 18 8 37 37 H 1.09004 * 109.47466 * 54.99984 * 20 19 18 38 38 H 1.09000 * 109.46314 * 60.00198 * 21 20 19 39 39 H 1.09001 * 109.46857 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.46989 * 300.00397 * 21 20 19 41 41 H 1.08998 * 109.47098 * 299.99626 * 22 20 19 42 42 H 1.08995 * 109.47436 * 60.00494 * 22 20 19 43 43 H 1.09003 * 109.46672 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 6 3.6379 -0.8429 0.0048 6 6 2.2759 -1.0900 -0.0005 7 6 1.7051 -2.4847 -0.0005 8 7 0.8737 -2.6734 -1.1968 9 6 -0.0786 -3.7759 -1.0076 10 6 -1.1549 -3.3499 -0.0427 11 1 -1.1796 -2.3347 0.3249 12 6 -2.1082 -4.2561 0.3706 13 7 -2.0779 -5.4924 -0.0768 14 14 -3.4429 -3.7279 1.5662 15 1 -4.2340 -2.6227 0.9681 16 1 -4.3364 -4.8793 1.8508 17 1 -2.8186 -3.2620 2.8305 18 6 1.7061 -2.8951 -2.3868 19 6 2.3693 -1.5790 -2.7977 20 6 3.2956 -1.8253 -3.9903 21 6 3.8623 -0.4911 -4.4800 22 6 4.4442 -2.7414 -3.5632 23 1 -0.3633 0.0665 1.0254 24 1 -0.3633 0.8549 -0.5704 25 1 -0.3633 -0.9214 -0.4552 26 1 4.9863 0.8270 -0.0007 27 1 4.3720 -1.6351 0.0093 28 1 1.0956 -2.6279 0.8917 29 1 2.5185 -3.2102 -0.0052 30 1 -0.5305 -4.0340 -1.9653 31 1 0.4454 -4.6438 -0.6074 32 1 -2.7489 -6.1299 0.2138 33 1 2.4747 -3.6341 -2.1600 34 1 1.0826 -3.2584 -3.2037 35 1 1.6019 -0.8570 -3.0767 36 1 2.9494 -1.1880 -1.9618 37 1 2.7335 -2.2986 -4.7954 38 1 4.4245 -0.0179 -3.6749 39 1 4.5226 -0.6667 -5.3293 40 1 3.0440 0.1614 -4.7841 41 1 5.0064 -2.2681 -2.7583 42 1 4.0405 -3.6919 -3.2145 43 1 5.1043 -2.9165 -4.4128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351403331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:48 Heat of formation + Delta-G solvation = 19.504701 kcal Electronic energy + Delta-G solvation = -21034.532385 eV Core-core repulsion = 18205.889745 eV Total energy + Delta-G solvation = -2828.642640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.00931 -36.49691 -35.22116 -32.51155 -31.41224 -29.02474 -28.19946 -27.02714 -25.77777 -24.39819 -22.40891 -22.16559 -20.13027 -19.61059 -17.94999 -16.72429 -16.36687 -15.23832 -15.15107 -14.77946 -14.21274 -14.08303 -13.65643 -13.26105 -13.04055 -12.88329 -12.62472 -12.16142 -12.05592 -12.00902 -11.92036 -11.68183 -11.46280 -11.36670 -11.07407 -10.90584 -10.86472 -10.72417 -10.66318 -10.34546 -10.29376 -10.23334 -9.96931 -9.63855 -9.18611 -8.43863 -8.14457 -7.84505 -7.19702 -6.02916 -4.04776 1.40865 2.01118 2.36160 3.10381 3.32709 3.37347 3.39621 4.41437 4.87283 5.11833 5.19002 5.19879 5.32414 5.38351 5.46203 5.68993 5.72336 5.74884 5.85877 5.92567 5.96747 6.01302 6.05251 6.08460 6.14803 6.20868 6.26551 6.28129 6.39251 6.45319 6.49963 6.52967 6.73786 6.81966 6.87952 7.01690 7.07439 7.30276 7.39147 7.85557 8.11458 8.20337 8.54940 9.03881 9.60078 11.07331 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.006096 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.526656 B = 4592.031808 C = 5762.283149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.130 4.130 3 S 0.044 5.956 4 C -0.228 4.228 5 C -0.115 4.115 6 C -0.099 4.099 7 C 0.120 3.880 8 N -0.530 5.530 9 C 0.192 3.808 10 C -0.510 4.510 11 H 0.070 0.930 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.058 3.942 19 C -0.121 4.121 20 C -0.096 4.096 21 C -0.142 4.142 22 C -0.146 4.146 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.130 0.870 26 H 0.154 0.846 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.027 0.973 31 H -0.005 1.005 32 H 0.261 0.739 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.961 9.900 -3.382 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.247 4.247 3 S 0.307 5.693 4 C -0.363 4.363 5 C -0.147 4.147 6 C -0.111 4.111 7 C -0.010 4.010 8 N -0.254 5.254 9 C 0.067 3.933 10 C -0.549 4.549 11 H 0.088 0.912 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.721 3.279 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.071 4.071 19 C -0.159 4.159 20 C -0.116 4.116 21 C -0.200 4.200 22 C -0.203 4.203 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.172 0.828 27 H 0.149 0.851 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.013 0.987 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.323 11.709 -3.442 16.648 hybrid contribution 0.140 -2.022 0.725 2.153 sum 11.462 9.687 -2.717 15.251 Atomic orbital electron populations 1.20769 0.87382 1.05843 1.01975 1.24242 1.00039 0.93258 1.07207 1.84060 0.98004 1.11809 1.75386 1.25249 1.01066 0.96637 1.13381 1.20028 0.95924 0.96130 1.02590 1.18918 0.91868 0.96880 1.03385 1.20649 0.95147 0.89392 0.95848 1.61954 1.16157 1.46383 1.00908 1.19765 0.89683 0.86761 0.97089 1.21246 1.10496 0.97233 1.25894 0.91230 1.24978 0.97992 0.94852 0.96618 1.69947 1.35566 1.03631 1.44600 0.86638 0.81755 0.78016 0.81498 1.20123 1.21452 1.20251 1.22145 0.95169 0.95611 0.94158 1.21972 0.98219 0.98206 0.97460 1.21100 0.96477 0.95633 0.98345 1.21794 1.00502 0.97288 1.00385 1.21867 0.97985 0.99855 1.00594 0.91936 0.92850 0.85214 0.82789 0.85092 0.88951 0.95349 0.95513 0.98722 0.92917 0.95818 0.91984 0.92129 0.90040 0.91814 0.92968 0.93412 0.92932 0.93038 0.92463 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.89 36.01 0.36 -1.37 16 2 C -0.13 -2.13 6.43 -36.00 -0.23 -2.36 16 3 S 0.04 0.61 23.33 -107.50 -2.51 -1.90 16 4 C -0.23 -2.96 11.23 29.04 0.33 -2.64 16 5 C -0.12 -1.64 8.03 -41.21 -0.33 -1.97 16 6 C -0.10 -1.64 3.13 -106.25 -0.33 -1.97 16 7 C 0.12 2.26 4.65 -4.97 -0.02 2.24 16 8 N -0.53 -10.71 2.75 -237.50 -0.65 -11.36 16 9 C 0.19 4.74 4.72 -4.97 -0.02 4.72 16 10 C -0.51 -13.45 8.07 -34.44 -0.28 -13.73 16 11 H 0.07 1.77 5.69 -52.49 -0.30 1.47 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 14 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.06 1.02 4.80 -3.82 -0.02 1.00 16 19 C -0.12 -1.85 4.34 -26.73 -0.12 -1.97 16 20 C -0.10 -1.25 2.92 -90.62 -0.26 -1.51 16 21 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 22 C -0.15 -1.75 8.95 37.16 0.33 -1.42 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.13 2.59 3.87 -51.93 -0.20 2.39 16 26 H 0.15 1.61 8.06 -52.48 -0.42 1.18 16 27 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.94 7.11 -51.93 -0.37 1.57 16 29 H 0.03 0.52 7.63 -51.93 -0.40 0.12 16 30 H 0.03 0.71 7.71 -51.93 -0.40 0.31 16 31 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.02 0.42 6.06 -51.93 -0.31 0.10 16 34 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.25 3.61 -51.93 -0.19 1.06 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.73 6.50 -51.93 -0.34 0.39 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -27.23 343.68 -9.73 -36.97 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.11 Total: 1.17 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -0.36 Total: -20.82 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.08 Total: -36.62 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.51 Total: -1.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.23 -9.73 -36.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351403331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.472 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds