Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75883 * 125.20542 * 2 1 4 4 C 1.75884 * 90.96828 * 180.02562 * 3 2 1 5 5 C 1.33382 * 109.59579 * 359.73393 * 4 3 2 6 6 C 1.33388 * 125.20088 * 180.02562 * 2 1 3 7 7 C 1.50704 * 122.54217 * 359.97438 * 6 2 1 8 8 N 1.46900 * 109.46655 * 59.76115 * 7 6 2 9 9 C 1.46910 * 111.00104 * 201.19922 * 8 7 6 10 10 C 1.50700 * 109.46871 * 71.93340 * 9 8 7 11 11 H 1.07999 * 120.00042 * 4.96755 * 10 9 8 12 12 C 1.37876 * 119.99900 * 184.95895 * 10 9 8 13 13 N 1.31509 * 119.99799 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00021 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46882 * 59.99902 * 14 12 10 16 16 H 1.48500 * 109.47111 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46826 * 300.00208 * 14 12 10 18 18 C 1.46905 * 111.00150 * 77.24699 * 8 7 6 19 19 C 1.52999 * 109.46929 * 286.94837 * 18 8 7 20 20 C 1.52998 * 109.46854 * 176.93549 * 19 18 8 21 21 C 1.53003 * 109.47090 * 174.99629 * 20 19 18 22 22 C 1.53001 * 109.47071 * 294.99925 * 20 19 18 23 23 H 1.08992 * 109.47364 * 273.71089 * 1 2 3 24 24 H 1.09003 * 109.46611 * 33.71049 * 1 2 3 25 25 H 1.09004 * 109.47035 * 153.70623 * 1 2 3 26 26 H 1.08007 * 125.19640 * 180.02562 * 4 3 2 27 27 H 1.07999 * 122.53947 * 180.24116 * 5 4 3 28 28 H 1.09002 * 109.47231 * 299.76976 * 7 6 2 29 29 H 1.08990 * 109.47410 * 179.76230 * 7 6 2 30 30 H 1.08997 * 109.46977 * 191.93639 * 9 8 7 31 31 H 1.08999 * 109.46526 * 311.93758 * 9 8 7 32 32 H 0.97004 * 119.99654 * 180.02562 * 13 12 10 33 33 H 1.09007 * 109.46603 * 46.94522 * 18 8 7 34 34 H 1.08998 * 109.46886 * 166.94473 * 18 8 7 35 35 H 1.09004 * 109.46942 * 296.93449 * 19 18 8 36 36 H 1.08996 * 109.47044 * 56.93719 * 19 18 8 37 37 H 1.09004 * 109.47466 * 54.99984 * 20 19 18 38 38 H 1.09000 * 109.46314 * 60.00198 * 21 20 19 39 39 H 1.09001 * 109.46857 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.46989 * 300.00397 * 21 20 19 41 41 H 1.08998 * 109.47098 * 299.99626 * 22 20 19 42 42 H 1.08995 * 109.47436 * 60.00494 * 22 20 19 43 43 H 1.09003 * 109.46672 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 6 3.6379 -0.8429 0.0048 6 6 2.2759 -1.0900 -0.0005 7 6 1.7051 -2.4847 -0.0005 8 7 0.8737 -2.6734 -1.1968 9 6 -0.0786 -3.7759 -1.0076 10 6 -1.1549 -3.3499 -0.0427 11 1 -1.1796 -2.3347 0.3249 12 6 -2.1082 -4.2561 0.3706 13 7 -2.0779 -5.4924 -0.0768 14 14 -3.4429 -3.7279 1.5662 15 1 -4.2340 -2.6227 0.9681 16 1 -4.3364 -4.8793 1.8508 17 1 -2.8186 -3.2620 2.8305 18 6 1.7061 -2.8951 -2.3868 19 6 2.3693 -1.5790 -2.7977 20 6 3.2956 -1.8253 -3.9903 21 6 3.8623 -0.4911 -4.4800 22 6 4.4442 -2.7414 -3.5632 23 1 -0.3633 0.0665 1.0254 24 1 -0.3633 0.8549 -0.5704 25 1 -0.3633 -0.9214 -0.4552 26 1 4.9863 0.8270 -0.0007 27 1 4.3720 -1.6351 0.0093 28 1 1.0956 -2.6279 0.8917 29 1 2.5185 -3.2102 -0.0052 30 1 -0.5305 -4.0340 -1.9653 31 1 0.4454 -4.6438 -0.6074 32 1 -2.7489 -6.1299 0.2138 33 1 2.4747 -3.6341 -2.1600 34 1 1.0826 -3.2584 -3.2037 35 1 1.6019 -0.8570 -3.0767 36 1 2.9494 -1.1880 -1.9618 37 1 2.7335 -2.2986 -4.7954 38 1 4.4245 -0.0179 -3.6749 39 1 4.5226 -0.6667 -5.3293 40 1 3.0440 0.1614 -4.7841 41 1 5.0064 -2.2681 -2.7583 42 1 4.0405 -3.6919 -3.2145 43 1 5.1043 -2.9165 -4.4128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351403331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = 7.030757 kcal Electronic energy + Delta-G solvation = -21035.073296 eV Core-core repulsion = 18205.889745 eV Total energy + Delta-G solvation = -2829.183551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36340 -37.74073 -36.65383 -34.52802 -32.65071 -30.53246 -29.76167 -27.96776 -27.46517 -25.81169 -24.04567 -23.44129 -21.71844 -20.73167 -19.24439 -18.41630 -17.87327 -16.86992 -16.48683 -16.27658 -15.70009 -15.33500 -14.97113 -14.60038 -14.36439 -14.16093 -14.10547 -13.82982 -13.35106 -13.30052 -13.09089 -13.05850 -12.92214 -12.84341 -12.55699 -12.48723 -12.36480 -12.17692 -11.97570 -11.85608 -11.58729 -11.49849 -11.31527 -11.18622 -11.04571 -10.56114 -9.29035 -9.03977 -8.90244 -8.14650 -6.23600 0.25602 0.87119 1.21850 1.43142 1.45219 1.52478 1.88719 2.43074 3.18014 3.36808 4.03036 4.09311 4.15169 4.17942 4.28947 4.36320 4.40428 4.64352 4.69150 4.73773 4.76840 4.86690 4.86905 4.88781 4.90781 4.96056 5.02782 5.08194 5.18202 5.21398 5.28074 5.30586 5.31795 5.43509 5.53625 5.56152 5.62254 5.65600 5.78882 5.86810 6.13855 6.40755 6.70098 6.94529 7.46062 8.95668 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.006096 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.526656 B = 4592.031808 C = 5762.283149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.158 4.158 3 S 0.082 5.918 4 C -0.209 4.209 5 C -0.131 4.131 6 C -0.103 4.103 7 C 0.126 3.874 8 N -0.527 5.527 9 C 0.208 3.792 10 C -0.516 4.516 11 H 0.077 0.923 12 C 0.003 3.997 13 N -0.937 5.937 14 Si 0.959 3.041 15 H -0.267 1.267 16 H -0.288 1.288 17 H -0.268 1.268 18 C 0.058 3.942 19 C -0.108 4.108 20 C -0.095 4.095 21 C -0.137 4.137 22 C -0.143 4.143 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.189 0.811 27 H 0.146 0.854 28 H 0.064 0.936 29 H 0.030 0.970 30 H -0.001 1.001 31 H -0.037 1.037 32 H 0.261 0.739 33 H 0.026 0.974 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.806 12.330 -3.192 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.275 4.275 3 S 0.345 5.655 4 C -0.344 4.344 5 C -0.161 4.161 6 C -0.115 4.115 7 C -0.004 4.004 8 N -0.251 5.251 9 C 0.082 3.918 10 C -0.554 4.554 11 H 0.095 0.905 12 C -0.195 4.195 13 N -0.578 5.578 14 Si 0.785 3.215 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.070 4.070 19 C -0.145 4.145 20 C -0.114 4.114 21 C -0.195 4.195 22 C -0.200 4.200 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.206 0.794 27 H 0.164 0.836 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.017 0.983 31 H -0.019 1.019 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.182 14.163 -3.256 19.621 hybrid contribution -0.368 -2.739 0.637 2.836 sum 12.814 11.424 -2.620 17.366 Atomic orbital electron populations 1.20611 0.88510 1.04739 1.01836 1.24258 0.99985 0.95092 1.08184 1.83939 0.97365 1.09704 1.74458 1.25667 1.02292 0.95818 1.10617 1.20055 0.94852 0.97373 1.03837 1.18764 0.93208 0.95147 1.04404 1.20503 0.94364 0.91658 0.93894 1.61941 1.16766 1.43941 1.02445 1.19410 0.90280 0.87089 0.95044 1.21604 1.10606 0.97569 1.25639 0.90468 1.25847 1.00403 0.94814 0.98437 1.70089 1.36619 1.04839 1.46230 0.85580 0.78849 0.77694 0.79415 1.19197 1.21357 1.19321 1.22211 0.94689 0.97499 0.92622 1.21855 0.98064 0.95866 0.98757 1.21089 0.96326 0.97025 0.97003 1.21745 1.00659 0.95974 1.01097 1.21836 0.97790 0.98878 1.01506 0.91979 0.91552 0.88409 0.79376 0.83643 0.91790 0.95152 0.98291 1.01904 0.92975 0.95557 0.93407 0.93623 0.89484 0.92282 0.92548 0.91717 0.93191 0.92381 0.93861 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.36 9.89 71.24 0.70 -2.66 16 2 C -0.16 -5.00 6.43 24.59 0.16 -4.84 16 3 S 0.08 2.02 23.33 -56.49 -1.32 0.70 16 4 C -0.21 -4.58 11.23 66.72 0.75 -3.83 16 5 C -0.13 -3.37 8.03 21.21 0.17 -3.20 16 6 C -0.10 -3.32 3.13 -20.92 -0.07 -3.39 16 7 C 0.13 4.88 4.65 85.56 0.40 5.28 16 8 N -0.53 -22.26 2.75 -905.33 -2.49 -24.75 16 9 C 0.21 10.91 4.72 85.56 0.40 11.32 16 10 C -0.52 -28.27 8.07 25.60 0.21 -28.07 16 11 H 0.08 4.05 5.69 -2.91 -0.02 4.03 16 12 C 0.00 0.15 5.46 84.66 0.46 0.61 16 13 N -0.94 -56.22 13.29 21.45 0.28 -55.94 16 14 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C 0.06 2.12 4.80 86.30 0.41 2.53 16 19 C -0.11 -3.24 4.34 30.59 0.13 -3.10 16 20 C -0.10 -2.31 2.92 -10.79 -0.03 -2.34 16 21 C -0.14 -2.78 9.19 71.98 0.66 -2.12 16 22 C -0.14 -3.15 8.95 71.98 0.64 -2.50 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.10 4.00 3.87 -2.39 -0.01 3.99 16 26 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 27 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.06 2.81 7.11 -2.39 -0.02 2.80 16 29 H 0.03 1.14 7.63 -2.39 -0.02 1.12 16 30 H 0.00 -0.06 7.71 -2.39 -0.02 -0.08 16 31 H -0.04 -2.13 8.05 -2.39 -0.02 -2.14 16 32 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.03 0.95 6.06 -2.38 -0.01 0.93 16 34 H 0.05 1.85 7.70 -2.39 -0.02 1.84 16 35 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.09 2.54 3.61 -2.39 -0.01 2.53 16 37 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 1.06 6.50 -2.39 -0.02 1.05 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -60.53 343.68 4.49 -56.05 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.97 Total: 14.33 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 5.01 Total: -36.31 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.20 Total: -80.68 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.32 Total: 0.70 kcal Total: -60.53 4.49 -56.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351403331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.077 kcal (2) G-P(sol) polarization free energy of solvation -60.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds