Wall clock time and date at job start Tue Mar 31 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 C 1.52998 * 109.47119 * 89.97567 * 7 6 2 9 9 N 1.46901 * 109.46709 * 180.02562 * 8 7 6 10 10 C 1.46908 * 110.99729 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46895 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47379 * 299.99875 * 11 10 9 13 13 C 1.53000 * 109.47033 * 60.00157 * 11 10 9 14 14 C 1.53002 * 109.46841 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.46851 * 179.97438 * 14 11 10 16 16 H 1.07997 * 120.00008 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99750 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99860 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47080 * 59.99957 * 19 17 15 21 21 H 1.48499 * 109.46664 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46852 * 299.99622 * 19 17 15 23 23 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 24 24 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 25 25 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 26 26 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 27 27 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 29 29 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 30 30 H 1.08991 * 109.47264 * 300.00412 * 8 7 6 31 31 H 1.09003 * 109.46711 * 60.00752 * 8 7 6 32 32 H 1.00889 * 111.00189 * 56.05070 * 9 8 7 33 33 H 1.08994 * 109.47096 * 300.00057 * 10 9 8 34 34 H 1.09000 * 109.46857 * 59.99819 * 10 9 8 35 35 H 1.08998 * 109.46890 * 60.00152 * 12 11 10 36 36 H 1.08991 * 109.47369 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.47074 * 300.00618 * 12 11 10 38 38 H 1.08994 * 109.47268 * 59.99761 * 13 11 10 39 39 H 1.08999 * 109.46613 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.47108 * 299.99281 * 13 11 10 41 41 H 1.08994 * 109.47093 * 300.00014 * 14 11 10 42 42 H 1.09002 * 109.47030 * 60.00339 * 14 11 10 43 43 H 0.96996 * 119.99802 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 6 1.4614 -2.9908 -1.4430 9 7 0.9045 -4.3501 -1.4437 10 6 0.7064 -4.8372 -2.8154 11 6 0.1259 -6.2522 -2.7753 12 6 1.0946 -7.1803 -2.0395 13 6 -1.2170 -6.2320 -2.0424 14 6 -0.0798 -6.7597 -4.2040 15 6 -0.6510 -8.1537 -4.1644 16 1 -0.8472 -8.6302 -3.2153 17 6 -0.9220 -8.8213 -5.3401 18 7 -0.6826 -8.2412 -6.4959 19 14 -1.6307 -10.5489 -5.2911 20 1 -2.9347 -10.5291 -4.5809 21 1 -1.8302 -11.0415 -6.6778 22 1 -0.6910 -11.4492 -4.5759 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.7965 2.1464 -0.0007 27 1 4.3078 1.7822 0.0010 28 1 2.3395 -3.1927 0.5138 29 1 0.6922 -2.5185 0.5130 30 1 0.7757 -2.3173 -1.9570 31 1 2.4230 -2.9915 -1.9562 32 1 0.0440 -4.3886 -0.9183 33 1 0.0160 -4.1764 -3.3395 34 1 1.6630 -4.8511 -3.3377 35 1 1.2415 -6.8189 -1.0217 36 1 0.6809 -8.1882 -2.0105 37 1 2.0513 -7.1946 -2.5616 38 1 -1.9070 -5.5709 -2.5666 39 1 -1.6307 -7.2400 -2.0143 40 1 -1.0700 -5.8707 -1.0246 41 1 -0.7696 -6.0987 -4.7285 42 1 0.8772 -6.7742 -4.7257 43 1 -0.8736 -8.7106 -7.3229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358517076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:09 Heat of formation + Delta-G solvation = 1.905540 kcal Electronic energy + Delta-G solvation = -19517.485370 eV Core-core repulsion = 16688.079573 eV Total energy + Delta-G solvation = -2829.405797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.82072 -37.64431 -35.03745 -32.60173 -31.62297 -29.86749 -27.16003 -26.53394 -26.30060 -24.76926 -23.18809 -22.26502 -21.70232 -18.55972 -17.87170 -17.26779 -16.23097 -15.73405 -15.43828 -14.80739 -14.37268 -14.11018 -14.01349 -13.74509 -13.17227 -12.95940 -12.66961 -12.59123 -12.34486 -12.14976 -12.00840 -11.90638 -11.74865 -11.48933 -11.22583 -10.93647 -10.86510 -10.77650 -10.71021 -10.46617 -10.23974 -10.12387 -9.66226 -9.02168 -8.85577 -8.69921 -8.48520 -8.29878 -8.09466 -5.94527 -3.94690 0.82670 1.48566 1.85473 2.50310 3.35797 3.40397 3.42593 4.31288 4.50921 4.72519 4.85014 4.98484 5.17091 5.20330 5.29690 5.34063 5.41154 5.43997 5.62699 5.69274 5.73058 5.74903 5.83835 5.97019 5.97683 6.04176 6.25104 6.27166 6.35593 6.40519 6.52720 6.68023 6.80574 6.84852 7.22745 7.23079 7.28176 7.40367 7.67599 7.72822 7.87702 8.05808 8.50163 9.10543 9.67935 11.17173 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038538 B = 0.002763 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.377993 B =10132.500163 C =10261.497620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.113 4.113 3 C -0.128 4.128 4 C -0.220 4.220 5 S 0.096 5.904 6 C -0.167 4.167 7 C -0.047 4.047 8 C 0.064 3.936 9 N -0.687 5.687 10 C 0.071 3.929 11 C -0.059 4.059 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.034 3.966 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.137 0.863 27 H 0.161 0.839 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.338 0.662 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 17.951 14.493 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.159 4.159 4 C -0.356 4.356 5 S 0.361 5.639 6 C -0.285 4.285 7 C -0.087 4.087 8 C -0.066 4.066 9 N -0.319 5.319 10 C -0.058 4.058 11 C -0.059 4.059 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.546 4.546 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.179 0.821 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.448 16.781 14.365 23.312 hybrid contribution -2.313 0.572 -0.502 2.435 sum 5.135 17.354 13.863 22.797 Atomic orbital electron populations 1.20520 0.89840 1.02836 1.02154 1.18860 0.97445 0.91624 1.04575 1.20036 0.92888 0.99194 1.03778 1.25543 0.99720 0.99156 1.11157 1.84365 1.06126 1.00263 1.73110 1.24312 0.95547 0.99106 1.09486 1.20122 1.01249 0.89279 0.98046 1.21901 1.00218 0.89598 0.94847 1.60556 1.34004 1.21365 1.15966 1.22106 0.99759 0.96499 0.87424 1.20633 0.94091 0.91955 0.99221 1.21596 0.98130 0.99250 0.98336 1.21766 0.97199 1.02290 0.97354 1.19118 0.96752 0.95729 0.88759 1.21205 1.41349 0.99922 0.92084 0.92339 1.25019 0.96063 0.97807 0.95707 1.69956 1.49014 1.37624 0.97198 0.86724 0.79630 0.85169 0.76871 1.20366 1.21450 1.20301 0.91343 0.91610 0.91370 0.84543 0.82099 0.89885 0.90144 0.95355 0.91114 0.84343 0.95858 0.91582 0.93894 0.92708 0.94195 0.94132 0.91714 0.94793 0.96946 0.96698 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.60 36.01 0.35 -0.44 16 2 C -0.11 -1.14 5.80 -106.25 -0.62 -1.75 16 3 C -0.13 -1.18 9.98 -41.21 -0.41 -1.59 16 4 C -0.22 -1.97 11.23 29.04 0.33 -1.65 16 5 S 0.10 0.97 23.33 -107.50 -2.51 -1.54 16 6 C -0.17 -1.78 5.76 -36.00 -0.21 -1.99 16 7 C -0.05 -0.50 5.34 -27.88 -0.15 -0.65 16 8 C 0.06 0.80 5.67 -3.82 -0.02 0.78 16 9 N -0.69 -9.85 5.71 -113.78 -0.65 -10.50 16 10 C 0.07 1.23 4.65 -3.82 -0.02 1.21 16 11 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 12 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 13 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 14 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 15 C -0.51 -13.92 7.65 -34.44 -0.26 -14.19 16 16 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 25 H 0.07 0.60 6.98 -51.93 -0.36 0.23 16 26 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.78 7.32 -51.93 -0.38 0.40 16 30 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.34 4.54 6.77 -39.30 -0.27 4.27 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 36 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 40 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -29.49 352.76 -10.20 -39.69 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.35 Total: 0.02 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -0.73 Total: -23.36 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.09 Total: -36.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.49 -10.20 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358517076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.592 kcal (2) G-P(sol) polarization free energy of solvation -29.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds