Wall clock time and date at job start Tue Mar 31 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 C 1.52998 * 109.47119 * 89.97567 * 7 6 2 9 9 N 1.46901 * 109.46709 * 180.02562 * 8 7 6 10 10 C 1.46908 * 110.99729 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46895 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47379 * 299.99875 * 11 10 9 13 13 C 1.53000 * 109.47033 * 60.00157 * 11 10 9 14 14 C 1.53002 * 109.46841 * 180.02562 * 11 10 9 15 15 C 1.50700 * 109.46851 * 179.97438 * 14 11 10 16 16 H 1.07997 * 120.00008 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99750 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99860 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47080 * 59.99957 * 19 17 15 21 21 H 1.48499 * 109.46664 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46852 * 299.99622 * 19 17 15 23 23 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 24 24 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 25 25 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 26 26 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 27 27 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 29 29 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 30 30 H 1.08991 * 109.47264 * 300.00412 * 8 7 6 31 31 H 1.09003 * 109.46711 * 60.00752 * 8 7 6 32 32 H 1.00889 * 111.00189 * 56.05070 * 9 8 7 33 33 H 1.08994 * 109.47096 * 300.00057 * 10 9 8 34 34 H 1.09000 * 109.46857 * 59.99819 * 10 9 8 35 35 H 1.08998 * 109.46890 * 60.00152 * 12 11 10 36 36 H 1.08991 * 109.47369 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.47074 * 300.00618 * 12 11 10 38 38 H 1.08994 * 109.47268 * 59.99761 * 13 11 10 39 39 H 1.08999 * 109.46613 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.47108 * 299.99281 * 13 11 10 41 41 H 1.08994 * 109.47093 * 300.00014 * 14 11 10 42 42 H 1.09002 * 109.47030 * 60.00339 * 14 11 10 43 43 H 0.96996 * 119.99802 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 6 1.4614 -2.9908 -1.4430 9 7 0.9045 -4.3501 -1.4437 10 6 0.7064 -4.8372 -2.8154 11 6 0.1259 -6.2522 -2.7753 12 6 1.0946 -7.1803 -2.0395 13 6 -1.2170 -6.2320 -2.0424 14 6 -0.0798 -6.7597 -4.2040 15 6 -0.6510 -8.1537 -4.1644 16 1 -0.8472 -8.6302 -3.2153 17 6 -0.9220 -8.8213 -5.3401 18 7 -0.6826 -8.2412 -6.4959 19 14 -1.6307 -10.5489 -5.2911 20 1 -2.9347 -10.5291 -4.5809 21 1 -1.8302 -11.0415 -6.6778 22 1 -0.6910 -11.4492 -4.5759 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.7965 2.1464 -0.0007 27 1 4.3078 1.7822 0.0010 28 1 2.3395 -3.1927 0.5138 29 1 0.6922 -2.5185 0.5130 30 1 0.7757 -2.3173 -1.9570 31 1 2.4230 -2.9915 -1.9562 32 1 0.0440 -4.3886 -0.9183 33 1 0.0160 -4.1764 -3.3395 34 1 1.6630 -4.8511 -3.3377 35 1 1.2415 -6.8189 -1.0217 36 1 0.6809 -8.1882 -2.0105 37 1 2.0513 -7.1946 -2.5616 38 1 -1.9070 -5.5709 -2.5666 39 1 -1.6307 -7.2400 -2.0143 40 1 -1.0700 -5.8707 -1.0246 41 1 -0.7696 -6.0987 -4.7285 42 1 0.8772 -6.7742 -4.7257 43 1 -0.8736 -8.7106 -7.3229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358517076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:09 Heat of formation + Delta-G solvation = -13.536921 kcal Electronic energy + Delta-G solvation = -19518.155006 eV Core-core repulsion = 16688.079573 eV Total energy + Delta-G solvation = -2830.075433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.65506 -39.04872 -36.33492 -34.46244 -32.78236 -30.69759 -28.99536 -27.88099 -27.67194 -26.18036 -24.46221 -23.53719 -22.72400 -19.60116 -19.17997 -18.32656 -18.06506 -16.91067 -16.62780 -16.18204 -15.71256 -15.36361 -15.14184 -14.85031 -14.46175 -14.29958 -13.94620 -13.79804 -13.60710 -13.33692 -13.15998 -12.93394 -12.78207 -12.71994 -12.56536 -12.47670 -12.45742 -12.22781 -12.12270 -11.97082 -11.89391 -11.52346 -11.35692 -10.85710 -10.75061 -10.49473 -9.49029 -9.31502 -9.23138 -8.13340 -6.20548 0.09445 0.75888 1.13674 1.41427 1.43845 1.51087 1.79436 2.44390 3.20477 3.22495 3.98323 4.05381 4.11167 4.15375 4.23593 4.32592 4.41035 4.48687 4.53368 4.64478 4.76395 4.78113 4.82925 4.84338 4.94764 4.99276 5.04449 5.09757 5.16456 5.21113 5.23238 5.23761 5.52623 5.54882 5.55570 5.59738 5.66342 5.69018 5.88248 5.93382 6.05177 6.37173 6.54678 6.94600 7.46789 8.98973 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038538 B = 0.002763 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.377993 B =10132.500163 C =10261.497620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.116 4.116 3 C -0.139 4.139 4 C -0.215 4.215 5 S 0.072 5.928 6 C -0.187 4.187 7 C -0.037 4.037 8 C 0.070 3.930 9 N -0.681 5.681 10 C 0.083 3.917 11 C -0.055 4.055 12 C -0.107 4.107 13 C -0.122 4.122 14 C 0.040 3.960 15 C -0.515 4.515 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.957 3.043 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.268 1.268 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.158 0.842 27 H 0.184 0.816 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.347 0.653 33 H 0.018 0.982 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.070 0.930 41 H -0.016 1.016 42 H -0.018 1.018 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 18.589 16.540 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.170 4.170 4 C -0.350 4.350 5 S 0.337 5.663 6 C -0.305 4.305 7 C -0.076 4.076 8 C -0.060 4.060 9 N -0.314 5.314 10 C -0.046 4.046 11 C -0.056 4.056 12 C -0.164 4.164 13 C -0.179 4.179 14 C 0.002 3.998 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.782 3.218 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.193 1.193 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.175 0.825 27 H 0.201 0.799 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.002 0.998 42 H 0.000 1.000 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.882 17.424 16.441 24.925 hybrid contribution -2.102 0.475 -1.142 2.438 sum 4.781 17.899 15.299 24.027 Atomic orbital electron populations 1.20569 0.88741 1.03110 1.02949 1.19191 0.98421 0.91735 1.03459 1.20322 0.93009 0.99917 1.03712 1.25866 1.00312 0.98737 1.10114 1.84430 1.06487 1.01826 1.73606 1.24339 0.95685 0.99254 1.11172 1.19981 1.01860 0.89337 0.96431 1.21863 0.99372 0.88416 0.96348 1.60463 1.34427 1.22717 1.13774 1.21799 0.98660 0.94961 0.89217 1.20499 0.95699 0.93445 0.95937 1.21505 0.97112 0.98289 0.99519 1.21683 0.95712 1.01402 0.99128 1.19006 0.94034 0.94933 0.91810 1.21601 1.40559 1.00733 0.92387 0.91487 1.25939 0.96639 1.02210 0.95388 1.70106 1.50521 1.39506 0.97909 0.85624 0.79279 0.79978 0.76932 1.19157 1.21406 1.19331 0.90217 0.90586 0.91866 0.82479 0.79902 0.90192 0.88869 0.95314 0.92290 0.83305 0.96423 0.92893 0.91223 0.94194 0.95332 0.94442 0.93401 0.91127 0.99813 0.99973 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.60 71.24 0.68 -0.68 16 2 C -0.12 -2.11 5.80 -20.92 -0.12 -2.23 16 3 C -0.14 -2.25 9.98 21.22 0.21 -2.04 16 4 C -0.22 -3.44 11.23 66.72 0.75 -2.70 16 5 S 0.07 1.38 23.33 -56.49 -1.32 0.06 16 6 C -0.19 -3.74 5.76 24.59 0.14 -3.60 16 7 C -0.04 -0.72 5.34 29.85 0.16 -0.56 16 8 C 0.07 1.66 5.67 86.30 0.49 2.15 16 9 N -0.68 -18.41 5.71 -513.88 -2.94 -21.34 16 10 C 0.08 2.87 4.65 86.30 0.40 3.27 16 11 C -0.06 -2.20 0.60 -52.18 -0.03 -2.23 16 12 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 13 C -0.12 -4.32 7.89 71.98 0.57 -3.75 16 14 C 0.04 2.08 4.04 29.85 0.12 2.20 16 15 C -0.51 -28.63 7.65 25.60 0.20 -28.44 16 16 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 18 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 19 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 25 H 0.06 0.98 6.98 -2.39 -0.02 0.96 16 26 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 27 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 1.58 7.32 -2.39 -0.02 1.56 16 30 H 0.03 0.69 7.87 -2.39 -0.02 0.67 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.35 8.35 6.77 -89.70 -0.61 7.75 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 36 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 40 H 0.07 1.97 6.57 -2.39 -0.02 1.96 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.20 352.76 3.03 -61.16 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.37 Total: 13.09 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 4.61 Total: -41.94 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.65 Total: -78.99 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.06 kcal Total: -64.20 3.03 -61.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358517076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.626 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds