Wall clock time and date at job start Tue Mar 31 2020 05:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38288 * 119.92225 * 2 1 4 4 C 1.38107 * 120.06892 * 179.97438 * 3 2 1 5 5 C 1.38910 * 119.92751 * 0.28256 * 4 3 2 6 6 N 1.39674 * 120.07403 * 179.72389 * 5 4 3 7 7 C 1.46504 * 119.99944 * 359.97438 * 6 5 4 8 8 C 1.46497 * 120.00221 * 179.97438 * 6 5 4 9 9 C 1.50707 * 109.47099 * 89.99561 * 8 6 5 10 10 C 1.38623 * 119.75091 * 269.73432 * 9 8 6 11 11 C 1.37625 * 120.24913 * 179.72263 * 10 9 8 12 12 C 1.40721 * 119.73789 * 0.56576 * 11 10 9 13 13 C 1.41403 * 120.23967 * 179.68536 * 12 11 10 14 14 H 1.07994 * 119.99781 * 204.40017 * 13 12 11 15 15 C 1.39943 * 119.99912 * 24.39972 * 13 12 11 16 16 N 1.30830 * 120.00189 * 17.86090 * 15 13 12 17 17 Si 1.86801 * 119.99789 * 197.85492 * 15 13 12 18 18 H 1.48492 * 109.47141 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46793 * 120.00358 * 17 15 13 20 20 H 1.48500 * 109.47538 * 240.00120 * 17 15 13 21 21 C 1.40711 * 119.51700 * 359.70364 * 12 11 10 22 22 C 1.37618 * 119.74142 * 0.02562 * 21 12 11 23 23 C 1.38913 * 119.84832 * 359.44029 * 5 4 3 24 24 C 1.38101 * 119.92381 * 0.53511 * 23 5 4 25 25 H 1.08992 * 109.47254 * 89.99794 * 1 2 3 26 26 H 1.09003 * 109.47130 * 210.00288 * 1 2 3 27 27 H 1.09003 * 109.47155 * 329.99816 * 1 2 3 28 28 H 1.07992 * 119.96416 * 359.97438 * 3 2 1 29 29 H 1.08007 * 120.03482 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46827 * 90.00048 * 7 6 5 31 31 H 1.09005 * 109.46999 * 210.00038 * 7 6 5 32 32 H 1.08996 * 109.47071 * 329.99971 * 7 6 5 33 33 H 1.08996 * 109.47335 * 209.99927 * 8 6 5 34 34 H 1.09004 * 109.47153 * 330.00104 * 8 6 5 35 35 H 1.08003 * 119.87757 * 359.97405 * 10 9 8 36 36 H 1.07997 * 120.12995 * 180.27525 * 11 10 9 37 37 H 0.97001 * 119.99483 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.12971 * 179.97438 * 21 12 11 39 39 H 1.08000 * 119.87777 * 180.02562 * 22 21 12 40 40 H 1.08003 * 120.03181 * 180.25520 * 23 5 4 41 41 H 1.08003 * 119.96057 * 179.74575 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 0.0000 -0.0049 6 7 5.6707 0.0000 -0.0102 7 6 6.4032 1.2688 -0.0106 8 6 6.4033 -1.2686 -0.0153 9 6 6.6490 -1.7011 -1.4379 10 6 5.7216 -2.5049 -2.0825 11 6 5.9328 -2.9011 -3.3834 12 6 7.1015 -2.4970 -4.0551 13 6 7.3324 -2.9034 -5.3896 14 1 8.3409 -2.9484 -5.7735 15 6 6.2543 -3.2474 -6.2129 16 7 5.0420 -2.8730 -5.8938 17 14 6.5462 -4.2411 -7.7675 18 1 7.9951 -4.5374 -7.9009 19 1 5.7859 -5.5144 -7.6911 20 1 6.0894 -3.4618 -8.9462 21 6 8.0386 -1.6858 -3.3891 22 6 7.8038 -1.2970 -2.0900 23 6 3.5779 -1.2021 0.0010 24 6 2.1969 -1.1984 0.0010 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6550 2.1327 -0.0004 29 1 4.1161 2.1385 0.0010 30 1 6.5888 1.5815 1.0170 31 1 7.3537 1.1394 -0.5283 32 1 5.8122 2.0293 -0.5208 33 1 7.3576 -1.1392 0.4951 34 1 5.8162 -2.0293 0.4994 35 1 4.8278 -2.8180 -1.5632 36 1 5.2069 -3.5236 -3.8852 37 1 4.2949 -3.1112 -6.4647 38 1 8.9390 -1.3702 -3.8950 39 1 8.5214 -0.6740 -1.5768 40 1 4.1161 -2.1384 0.0010 41 1 1.6550 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398981777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:21 Heat of formation + Delta-G solvation = 43.148402 kcal Electronic energy + Delta-G solvation = -21133.211855 eV Core-core repulsion = 18170.150531 eV Total energy + Delta-G solvation = -2963.061324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.40280 -37.68453 -35.99953 -33.72777 -31.59888 -31.05817 -30.01867 -29.25964 -27.53854 -26.80657 -24.69680 -22.94080 -22.06488 -21.00099 -20.42798 -19.51786 -17.32686 -16.97553 -15.51873 -15.36130 -14.86130 -14.81900 -14.04841 -13.94198 -13.67973 -13.51457 -13.39489 -13.23406 -13.00797 -12.49754 -12.03802 -11.94204 -11.78409 -11.68536 -11.61532 -11.42598 -11.08936 -11.06642 -10.96020 -10.69801 -10.40846 -10.37427 -9.79934 -9.39944 -9.14217 -9.11864 -8.53604 -7.47039 -7.35714 -6.78816 -6.72531 -4.37426 1.82837 1.98301 2.67960 3.05158 3.06372 3.09584 3.12225 3.74303 3.91400 4.24840 4.62239 5.12157 5.25130 5.29589 5.46128 5.48985 5.63712 5.68054 5.70840 5.77489 5.81101 5.91535 5.96544 5.97700 6.11157 6.19597 6.25404 6.32858 6.39092 6.39546 6.72551 6.78394 6.93282 7.04617 7.05916 7.24273 7.29249 7.35027 7.59185 7.73311 7.82472 7.95367 8.03948 8.12148 8.28207 8.62719 8.87475 8.95849 10.16048 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.004667 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.765569 B = 5997.539185 C = 7129.538988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.162 4.162 3 C -0.074 4.074 4 C -0.205 4.205 5 C 0.228 3.772 6 N -0.621 5.621 7 C 0.096 3.904 8 C 0.183 3.817 9 C -0.238 4.238 10 C -0.084 4.084 11 C -0.167 4.167 12 C 0.114 3.886 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.789 5.789 17 Si 0.906 3.094 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.229 4.229 22 C -0.077 4.077 23 C -0.190 4.190 24 C -0.071 4.071 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 4.564 9.890 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.164 4.164 3 C -0.093 4.093 4 C -0.228 4.228 5 C 0.124 3.876 6 N -0.330 5.330 7 C -0.047 4.047 8 C 0.062 3.938 9 C -0.240 4.240 10 C -0.103 4.103 11 C -0.186 4.186 12 C 0.111 3.889 13 C -0.492 4.492 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.414 5.414 17 Si 0.731 3.269 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.200 1.200 21 C -0.249 4.249 22 C -0.096 4.096 23 C -0.212 4.212 24 C -0.090 4.090 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.188 4.570 9.818 11.611 hybrid contribution 0.117 -0.310 -1.011 1.063 sum -4.071 4.260 8.807 10.597 Atomic orbital electron populations 1.20599 0.92069 1.01600 1.01447 1.19535 0.95414 0.93198 1.08229 1.20636 0.93339 0.96962 0.98374 1.20597 0.94234 0.96289 1.11639 1.17838 0.83455 0.93701 0.92556 1.46826 1.01828 1.05823 1.78493 1.21529 0.97075 0.86154 0.99948 1.20099 0.94848 0.84166 0.94719 1.19381 0.98641 1.09436 0.96549 1.20601 0.96533 0.97935 0.95215 1.21309 1.00203 1.03970 0.93131 1.17635 0.90841 0.87837 0.92559 1.19646 0.94104 1.39453 0.95980 0.90442 1.25924 0.94563 0.93981 0.99751 1.69849 1.00289 1.34337 1.36943 0.86293 0.79938 0.79944 0.80756 1.18382 1.19650 1.19973 1.20937 1.02147 1.06057 0.95766 1.20317 0.95751 0.98739 0.94765 1.20784 0.94144 0.96870 1.09386 1.20714 0.93453 0.97090 0.97766 0.92178 0.92407 0.92522 0.86948 0.86566 0.94167 0.91576 0.91961 0.91827 0.91556 0.89372 0.86548 0.90876 0.89199 0.89903 0.85776 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.16 -2.35 5.88 -104.59 -0.62 -2.97 16 3 C -0.07 -1.08 9.69 -39.61 -0.38 -1.47 16 4 C -0.20 -3.21 9.21 -39.38 -0.36 -3.57 16 5 C 0.23 3.92 6.55 -83.79 -0.55 3.37 16 6 N -0.62 -10.37 2.99 -180.99 -0.54 -10.91 16 7 C 0.10 1.35 10.19 59.85 0.61 1.96 16 8 C 0.18 3.15 5.35 -5.19 -0.03 3.12 16 9 C -0.24 -5.03 5.49 -104.33 -0.57 -5.61 16 10 C -0.08 -1.95 9.31 -39.66 -0.37 -2.32 16 11 C -0.17 -4.36 8.70 -38.87 -0.34 -4.69 16 12 C 0.11 3.05 5.58 -106.82 -0.60 2.45 16 13 C -0.46 -12.34 9.05 -37.74 -0.34 -12.69 16 14 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 15 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 16 N -0.79 -20.67 10.95 55.55 0.61 -20.06 16 17 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 22 C -0.08 -1.68 9.67 -39.66 -0.38 -2.07 16 23 C -0.19 -3.23 8.48 -39.38 -0.33 -3.56 16 24 C -0.07 -1.11 9.69 -39.62 -0.38 -1.49 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.12 1.62 6.14 -52.48 -0.32 1.30 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.06 0.84 6.20 -51.93 -0.32 0.51 16 33 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 34 H 0.07 1.09 6.12 -51.93 -0.32 0.77 16 35 H 0.09 1.88 5.83 -52.48 -0.31 1.58 16 36 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 37 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 38 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.08 1.58 8.05 -52.49 -0.42 1.16 16 40 H 0.12 2.11 4.37 -52.48 -0.23 1.88 16 41 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -28.31 334.41 -10.26 -38.57 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.58 Total: 8.18 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -4.76 Total: -34.50 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.07 Total: -30.98 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.31 -10.26 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398981777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.717 kcal (2) G-P(sol) polarization free energy of solvation -28.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds