Wall clock time and date at job start Tue Mar 31 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38310 * 119.96289 * 2 1 4 4 C 1.38265 * 120.15333 * 179.97438 * 3 2 1 5 5 C 1.38128 * 120.07205 * 359.74600 * 4 3 2 6 6 C 1.38898 * 119.92350 * 0.48603 * 5 4 3 7 7 N 1.39674 * 120.07334 * 179.79629 * 6 5 4 8 8 C 1.46499 * 119.99543 * 179.72271 * 7 6 5 9 9 C 1.46499 * 120.00281 * 359.71519 * 7 6 5 10 10 C 1.50703 * 109.46900 * 90.00557 * 9 7 6 11 11 C 1.38629 * 119.75251 * 90.00058 * 10 9 7 12 12 C 1.37610 * 120.25244 * 179.70514 * 11 10 9 13 13 C 1.40718 * 119.74394 * 0.27583 * 12 11 10 14 14 C 1.41403 * 120.24537 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99744 * 24.37645 * 14 13 12 16 16 C 1.39941 * 120.00009 * 204.37575 * 14 13 12 17 17 N 1.30826 * 119.99936 * 17.84547 * 16 14 13 18 18 Si 1.86794 * 120.00203 * 197.84149 * 16 14 13 19 19 H 1.48500 * 109.47239 * 90.00058 * 18 16 14 20 20 H 1.48496 * 109.47389 * 210.00323 * 18 16 14 21 21 H 1.48500 * 109.46960 * 329.99948 * 18 16 14 22 22 C 1.40715 * 119.50980 * 359.97438 * 13 12 11 23 23 C 1.37611 * 119.74654 * 0.02562 * 22 13 12 24 24 C 1.38074 * 119.96468 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47235 * 270.02611 * 1 2 3 26 26 H 1.08999 * 109.47295 * 30.02296 * 1 2 3 27 27 H 1.09001 * 109.47356 * 150.02007 * 1 2 3 28 28 H 1.08000 * 119.92591 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.96639 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.04052 * 180.27966 * 5 4 3 31 31 H 1.09001 * 109.47047 * 269.99098 * 8 7 6 32 32 H 1.08994 * 109.47580 * 30.00057 * 8 7 6 33 33 H 1.09006 * 109.47130 * 149.99572 * 8 7 6 34 34 H 1.09001 * 109.46832 * 330.00941 * 9 7 6 35 35 H 1.08994 * 109.47466 * 210.00433 * 9 7 6 36 36 H 1.08003 * 119.87231 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.13222 * 180.29734 * 12 11 10 38 38 H 0.96996 * 120.00202 * 180.02562 * 17 16 14 39 39 H 1.08006 * 120.12439 * 180.02562 * 22 13 12 40 40 H 1.08000 * 119.87807 * 180.02562 * 23 22 13 41 41 H 1.07997 * 120.03816 * 0.02656 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0064 6 6 3.5859 -1.1953 0.0015 7 7 4.2867 -2.4036 0.0031 8 6 3.5566 -3.6737 0.0041 9 6 5.7517 -2.4007 0.0036 10 6 6.2535 -2.3983 1.4246 11 6 6.4849 -3.6008 2.0745 12 6 6.9489 -3.6106 3.3700 13 6 7.1829 -2.3938 4.0370 14 6 7.6601 -2.3915 5.3680 15 1 8.2094 -3.2410 5.7462 16 6 7.4207 -1.2885 6.1953 17 7 6.4849 -0.4287 5.8846 18 14 8.4372 -1.0438 7.7432 19 1 9.6373 -0.2296 7.4238 20 1 7.6207 -0.3418 8.7658 21 1 8.8616 -2.3654 8.2707 22 6 6.9395 -1.1793 3.3692 23 6 6.4756 -1.1935 2.0737 24 6 2.1966 -1.1962 0.0005 25 1 -0.3633 0.0005 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6559 2.1325 0.0004 29 1 4.1167 2.1402 0.0001 30 1 5.3564 0.0140 0.0113 31 1 3.3752 -3.9877 1.0320 32 1 2.6042 -3.5458 -0.5103 33 1 4.1474 -4.4328 -0.5088 34 1 6.1134 -1.5105 -0.5110 35 1 6.1170 -3.2905 -0.5092 36 1 6.3045 -4.5334 1.5606 37 1 7.1330 -4.5484 3.8728 38 1 6.3192 0.3361 6.4577 39 1 7.1161 -0.2397 3.8715 40 1 6.2885 -0.2627 1.5590 41 1 1.6566 -2.1315 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398984195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:24 Heat of formation + Delta-G solvation = 43.405424 kcal Electronic energy + Delta-G solvation = -21160.249312 eV Core-core repulsion = 18197.199133 eV Total energy + Delta-G solvation = -2963.050179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.41189 -37.67084 -35.92893 -33.68949 -32.26321 -30.89835 -29.52517 -29.06789 -27.85452 -26.36265 -25.18253 -23.45952 -21.44246 -20.96963 -20.54770 -19.36550 -17.32437 -16.88031 -15.50880 -15.35953 -15.16416 -14.83607 -14.03199 -13.93880 -13.72543 -13.57590 -13.38605 -13.23280 -12.74742 -12.49144 -12.05011 -11.99306 -11.79842 -11.75126 -11.59226 -11.39904 -11.07133 -11.06043 -10.95655 -10.69230 -10.42886 -10.39240 -9.80668 -9.39879 -9.21706 -9.13394 -8.34962 -7.46184 -7.35140 -6.80617 -6.76243 -4.36910 1.80080 2.02388 2.69127 3.05582 3.07175 3.09440 3.12345 3.73731 3.91771 4.25454 4.62766 5.08354 5.18119 5.27050 5.49610 5.53816 5.64749 5.66906 5.70991 5.72032 5.77905 5.90973 5.97043 5.98553 6.09753 6.16545 6.21769 6.33818 6.39087 6.40444 6.72476 6.88009 6.94774 7.02883 7.06065 7.24307 7.29684 7.35980 7.60007 7.73416 7.83412 7.95654 8.04554 8.13002 8.28996 8.63360 8.88069 8.96620 10.16860 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.004493 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.994556 B = 6230.916433 C = 7054.834178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.192 4.192 4 C -0.070 4.070 5 C -0.198 4.198 6 C 0.235 3.765 7 N -0.621 5.621 8 C 0.097 3.903 9 C 0.183 3.817 10 C -0.238 4.238 11 C -0.076 4.076 12 C -0.230 4.230 13 C 0.114 3.886 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.789 5.789 18 Si 0.908 3.092 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.167 4.167 23 C -0.084 4.084 24 C -0.208 4.208 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.281 0.719 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 0.551 -10.062 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.047 4.047 3 C -0.212 4.212 4 C -0.089 4.089 5 C -0.220 4.220 6 C 0.131 3.869 7 N -0.330 5.330 8 C -0.047 4.047 9 C 0.062 3.938 10 C -0.240 4.240 11 C -0.095 4.095 12 C -0.249 4.249 13 C 0.112 3.888 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.414 5.414 18 Si 0.732 3.268 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.187 4.187 23 C -0.103 4.103 24 C -0.230 4.230 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.691 0.555 -9.988 12.035 hybrid contribution 0.384 0.102 1.016 1.091 sum -6.308 0.657 -8.973 10.988 Atomic orbital electron populations 1.20753 0.91947 1.02052 1.02015 1.19537 0.95167 0.92803 0.97162 1.20631 0.94122 0.96821 1.09600 1.20815 0.94031 0.97124 0.96918 1.20794 0.99981 0.91118 1.10114 1.17811 0.90851 0.86192 0.92050 1.46832 1.05219 1.02463 1.78451 1.21534 0.96448 0.85601 1.01083 1.20120 0.78022 1.00869 0.94783 1.19385 1.14409 0.93697 0.96540 1.20308 0.99305 0.95099 0.94765 1.20935 1.11188 0.96920 0.95901 1.17633 0.87812 0.90897 0.92493 1.19624 1.31390 1.02099 0.96147 0.90469 1.25920 0.93703 0.94863 0.99716 1.69838 1.23663 1.10950 1.36988 0.86323 0.80413 0.79529 0.80536 1.19228 1.20292 1.18621 1.21306 1.05387 0.98684 0.93275 1.20611 0.99171 0.95264 0.95241 1.20455 0.92164 0.97720 1.12696 0.91407 0.91916 0.92047 0.87178 0.86686 0.85807 0.93517 0.92135 0.92056 0.91568 0.91827 0.89911 0.89212 0.90822 0.86563 0.89328 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.05 -0.67 5.88 -104.66 -0.62 -1.29 16 3 C -0.19 -2.81 9.70 -39.54 -0.38 -3.20 16 4 C -0.07 -1.09 10.04 -39.61 -0.40 -1.48 16 5 C -0.20 -3.38 8.45 -39.38 -0.33 -3.72 16 6 C 0.23 4.05 6.55 -83.78 -0.55 3.50 16 7 N -0.62 -10.40 2.99 -181.00 -0.54 -10.94 16 8 C 0.10 1.35 10.23 59.85 0.61 1.97 16 9 C 0.18 3.16 5.39 -5.19 -0.03 3.13 16 10 C -0.24 -5.06 5.49 -104.33 -0.57 -5.64 16 11 C -0.08 -1.67 9.67 -39.67 -0.38 -2.06 16 12 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 13 C 0.11 3.07 5.57 -106.82 -0.60 2.47 16 14 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.74 10.95 55.55 0.61 -20.13 16 18 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.17 -4.38 8.70 -38.88 -0.34 -4.72 16 23 C -0.08 -1.96 9.30 -39.66 -0.37 -2.33 16 24 C -0.21 -3.28 8.86 -39.38 -0.35 -3.63 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.12 2.12 4.33 -52.49 -0.23 1.89 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.73 6.20 -51.93 -0.32 0.41 16 33 H 0.06 0.74 7.89 -51.93 -0.41 0.33 16 34 H 0.07 1.09 6.15 -51.93 -0.32 0.77 16 35 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 36 H 0.08 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.12 3.17 6.16 -52.48 -0.32 2.84 16 40 H 0.09 1.90 5.75 -52.49 -0.30 1.60 16 41 H 0.12 1.64 6.14 -52.49 -0.32 1.32 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -28.51 334.02 -10.24 -38.75 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.56 Total: 8.33 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -4.75 Total: -34.79 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.07 Total: -31.07 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.51 -10.24 -38.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.151 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds